Summary
The library contains the functionality for reading and writing SFF files (sequencing data from 454 and Ion Torrent). It duplicates code from (and is incompatible with) the "bio" library.
Versions
v0.3.7.1 :: 0/0.3.7.1 :: gentoo
- Modified
- License
- LGPL-2.1
- Keywords
- ~amd64 ~x86
- USE flags
- doc fclip flower frecover hscolour profile
USE flags
General
- doc
- Add extra documentation (API, Javadoc, etc). It is recommended to enable per package instead of globally
- fclip
- Build the fclip executable.
- flower
- Build the flower executable.
- frecover
- Build the frecover executable.
- hscolour
- Include coloured haskell sources to generated documentation (dev-haskell/hscolour)
- profile
- Add support for software performance analysis (will likely vary from ebuild to ebuild)
Dependencies
dev-haskell / binary : Binary serialisation for Haskell values using lazy ByteStrings
dev-haskell / biocore : A bioinformatics library
dev-haskell / cabal : A framework for packaging Haskell software
dev-haskell / cmdargs : Command line argument processing
dev-haskell / haddock : A documentation-generation tool for Haskell libraries
dev-haskell / hscolour : Colourise Haskell code
dev-haskell / mtl : Monad classes, using functional dependencies
Runtime Dependencies
dev-haskell / binary : Binary serialisation for Haskell values using lazy ByteStrings
dev-haskell / biocore : A bioinformatics library
dev-haskell / cmdargs : Command line argument processing
dev-haskell / mtl : Monad classes, using functional dependencies
Bugs
- 720912
- dev-haskell/biosff-0.3.7.1 : src/.../Options.hs: error:
Change logs
- Repository mirror & CI · gentoo
Merge updates from master - Michał Górny · gentoo
*/*: Inline mirror://hackage and update URIs
This change inlines mirror://hackage in all ebuilds, and updates URIs to the modern form (old URIs redirect to that). The change has been made using the following command: find -name '*.ebuild' -exec sed -r -i \ -e 's@mirror://hackage/@https://hackage.haskell.org/@g' \ -e 's@https://hackage.haskell.org/packages/archive/([^/]*)/([^/]*)/@https://hackage.haskell.org/package/\1-\2/@g' \ -e '/hackage\.haskell\.org/s@\$\{PN}-\$\{PV}@${P}@g' \ -e '/hackage\.haskell\.org/s@\$\{MY_PN}-\$\{PV}@${MY_P}@g' \ -e '/hackage\.haskell\.org/s@\$\{PN}-\$\{MY_PV}@${MY_P}@g' \ {} + Signed-off-by: Michał Górny <mgorny@gentoo.org> - Robin H. Johnson · gentoo
Drop $Id$ per council decision in bug #611234.
Signed-off-by: Robin H. Johnson <robbat2@gentoo.org> - Sergei Trofimovich · gentoo
dev-haskell/biosff: port to ghc-7.10, bug #561348
Bug: https://bugs.gentoo.org/561348 Reported-by: Toralf Förster Package-Manager: portage-2.2.22 - Robin H. Johnson · gentoo
proj/gentoo: Initial commit
This commit represents a new era for Gentoo: Storing the gentoo-x86 tree in Git, as converted from CVS. This commit is the start of the NEW history. Any historical data is intended to be grafted onto this point. Creation process: 1. Take final CVS checkout snapshot 2. Remove ALL ChangeLog* files 3. Transform all Manifests to thin 4. Remove empty Manifests 5. Convert all stale $Header$/$Id$ CVS keywords to non-expanded Git $Id$ 5.1. Do not touch files with -kb/-ko keyword flags. Signed-off-by: Robin H. Johnson <robbat2@gentoo.org> X-Thanks: Alec Warner <antarus@gentoo.org> - did the GSoC 2006 migration tests X-Thanks: Robin H. Johnson <robbat2@gentoo.org> - infra guy, herding this project X-Thanks: Nguyen Thai Ngoc Duy <pclouds@gentoo.org> - Former Gentoo developer, wrote Git features for the migration X-Thanks: Brian Harring <ferringb@gentoo.org> - wrote much python to improve cvs2svn X-Thanks: Rich Freeman <rich0@gentoo.org> - validation scripts X-Thanks: Patrick Lauer <patrick@gentoo.org> - Gentoo dev, running new 2014 work in migration X-Thanks: Michał Górny <mgorny@gentoo.org> - scripts, QA, nagging X-Thanks: All of other Gentoo developers - many ideas and lots of paint on the bikeshed