Summary
R is GNU S, a system for statistical computation and graphics. It consists of a language plus a run-time environment with graphics, a debugger, access to certain system functions, and the ability to run programs stored in script files. The core of R is an interpreted computer language which allows branching and looping as well as modular programming using functions. The R distribution contains functionality for a large number of statistical procedures such as: linear and generalized linear models, nonlinear regression models, time series analysis, classical parametric and nonparametric tests, clustering, smoothing and graphical data representations. Additional modules ("add-on packages") are available for a variety of specific purposes but are not distributed with this package.
Versions
v4.0.2 :: 0 :: gentoo
- Modified
- License
- || ( GPL-2 GPL-3 ) LGPL-2.1
- Keywords
- ~amd64 ~amd64-linux ~arm64 ~hppa ~ia64 ~sparc ~x64-macos ~x86 ~x86-linux
- USE flags
- X cairo doc icu java jpeg lapack minimal nls openmp perl png prefix profile readline static-libs test tiff tk
v3.6.3-r1 :: 0 :: gentoo
- Modified
- License
- || ( GPL-2 GPL-3 ) LGPL-2.1
- Keywords
- ~amd64 ~amd64-linux ~arm64 ~hppa ~ia64 ~sparc ~x64-macos ~x86 ~x86-linux
- USE flags
- X cairo doc icu java jpeg lapack minimal nls openmp perl png prefix profile readline static-libs test tiff tk
v3.4.1 :: 0 :: gentoo
- Modified
- License
- || ( GPL-2 GPL-3 ) LGPL-2.1
- Keywords
- amd64 arm64 sparc x86 ~amd64-linux ~hppa ~ia64 ~x64-macos ~x86-linux
- USE flags
- X cairo doc icu java jpeg lapack minimal nls openmp perl png prefix profile readline static-libs tiff tk
USE flags
General
- X
- Add support for X11
- cairo
- Enable support for the cairo graphics library
- doc
- Add extra documentation (API, Javadoc, etc). It is recommended to enable per package instead of globally
- icu
- Enable ICU (Internationalization Components for Unicode) support, using dev-libs/icu
- java
- Add support for Java
- jpeg
- Add JPEG image support
- lapack
- Add support for the virtual/lapack numerical library
- minimal
- Install a very minimal build (disables, for example, plugins, fonts, most drivers, non-critical features)
- nls
- Add Native Language Support (using gettext - GNU locale utilities)
- openmp
- Build support for the OpenMP (support parallel computing), requires >=sys-devel/gcc-4.2 built with USE="openmp"
- perl
- Add optional support/bindings for the Perl language
- png
- Add support for libpng (PNG images)
- prefix
- Defines if a Gentoo Prefix offset installation is used
- profile
- Add support for software performance analysis (will likely vary from ebuild to ebuild)
- readline
- Enable support for libreadline, a GNU line-editing library that almost everyone wants
- static-libs
- Build static versions of dynamic libraries as well
- test
- Enable dependencies and/or preparations necessary to run tests (usually controlled by FEATURES=test but can be toggled independently)
- tiff
- Add support for the TIFF image format
- tk
- Add support for Tk GUI toolkit
Dependencies
app-arch / bzip2 : A high-quality data compressor used extensively by Gentoo Linux
app-arch / xz-utils : utils for managing LZMA compressed files
app-misc / realpath : Return the canonicalized absolute pathname
app-portage / elt-patches : Collection of patches for libtool.eclass
app-text / ghostscript-gpl : Interpreter for the PostScript language and PDF
dev-lang / perl : Larry Wall's Practical Extraction and Report Language
dev-libs / icu : International Components for Unicode
dev-libs / libpcre : Perl-compatible regular expression library
dev-libs / libpcre2 : Perl-compatible regular expression library
dev-texlive / texlive-fontsrecommended : TeXLive Recommended fonts
media-libs / libpng : Portable Network Graphics library
media-libs / tiff : Tag Image File Format (TIFF) library
net-libs / libtirpc : Transport Independent RPC library (SunRPC replacement)
net-misc / curl : A Client that groks URLs
sys-apps / coreutils : Standard GNU utilities (chmod, cp, dd, ls, sort, tr, head, wc, who,...)
sys-devel / autoconf : Used to create autoconfiguration files
sys-devel / automake : Used to generate Makefile.in from Makefile.am
sys-devel / libtool : A shared library tool for developers
sys-libs / readline : Another cute console display library
virtual / blas : Virtual for FORTRAN 77 BLAS implementation
virtual / fortran : Virtual for Fortran Compiler
virtual / jpeg : Virtual to select between libjpeg-turbo and IJG jpeg for source-based packages
virtual / lapack : Virtual for Linear Algebra Package FORTRAN 77 (LAPACK) implementation
virtual / latex-base : Virtual for basic LaTeX binaries
virtual / pkgconfig : Virtual for the pkg-config implementation
x11-libs / cairo : A vector graphics library with cross-device output support
x11-libs / libXmu : X.Org Xmu library
x11-libs / pango : Internationalized text layout and rendering library
x11-misc / xdg-utils : Portland utils for cross-platform/cross-toolkit/cross-desktop interoperability
Runtime Dependencies
app-arch / bzip2 : A high-quality data compressor used extensively by Gentoo Linux
app-arch / xz-utils : utils for managing LZMA compressed files
app-misc / realpath : Return the canonicalized absolute pathname
app-text / ghostscript-gpl : Interpreter for the PostScript language and PDF
dev-lang / perl : Larry Wall's Practical Extraction and Report Language
dev-libs / icu : International Components for Unicode
dev-libs / libpcre : Perl-compatible regular expression library
dev-libs / libpcre2 : Perl-compatible regular expression library
media-libs / libpng : Portable Network Graphics library
media-libs / tiff : Tag Image File Format (TIFF) library
net-libs / libtirpc : Transport Independent RPC library (SunRPC replacement)
net-misc / curl : A Client that groks URLs
sys-apps / coreutils : Standard GNU utilities (chmod, cp, dd, ls, sort, tr, head, wc, who,...)
sys-libs / readline : Another cute console display library
sys-libs / zlib : Standard (de)compression library
virtual / blas : Virtual for FORTRAN 77 BLAS implementation
virtual / fortran : Virtual for Fortran Compiler
virtual / jpeg : Virtual to select between libjpeg-turbo and IJG jpeg for source-based packages
virtual / jre : Virtual for Java Runtime Environment (JRE)
virtual / lapack : Virtual for Linear Algebra Package FORTRAN 77 (LAPACK) implementation
x11-libs / cairo : A vector graphics library with cross-device output support
x11-libs / libXmu : X.Org Xmu library
x11-libs / pango : Internationalized text layout and rendering library
x11-misc / xdg-utils : Portland utils for cross-platform/cross-toolkit/cross-desktop interoperability
Depending packages
app-vim / vim-r : vim plugin: integrate vim with R
dev-db / plr : R language extension for postgresql database
dev-lang / yap : YAP is a high-performance Prolog compiler
dev-python / rpy : Python interface to the R Programming Language
dev-util / diffoscope : Will try to get to the bottom of what makes files or directories different
kde-apps / cantor : Interface for doing mathematics and scientific computing
sci-biology / picard : Java-based command-line utilities that manipulate SAM files
sci-libs / vtk : The Visualization Toolkit
sci-mathematics / gretl : Regression, econometrics and time-series library
sci-mathematics / rkward : IDE for the R-project
sci-mathematics / rstudio : IDE for the R language
sci-physics / root : C++ data analysis framework and interpreter from CERN
Bugs
- 96600
- install add-on packages for dev-lang/R using package managers
- 353545
- >=dev-lang/R-3.0.1-r1 fails tests
- 458176
- dev-lang/R - USE=X should not manage both X11 driver support and HTTP-Help support
- 518066
- www-server/shiny-server - a server for hosting Shiny applicatins, web-sites written in dev-lang/R for interactive data analysis
- 575860
- dev-lang/R-3.2.3 - In file included from qdCocoa.m:24: /usr/include/objc/NSObject.h:22: error: expected ‘)’ before ‘instancetype’
- 581320
- roverlay: recommended packages need "dev-lang/R[minimal]" dependency.
- 631620
- dev-lang/R-3.4.1 : running code in reg-tests-3.R make[3]: *** [Makefile.common:100: reg-tests-3.Rout] Error 1
- 665760
- dev-lang/R-3.5.1 - Error: segfault from C stack overflow
- 687360
- dev-lang/R-3.5.3 : [TEST] running code in reg-tests-1d.R make[3]: *** [Makefile.common:105: reg-tests-1d.Rout] Error 1
- 688284
- dev-lang/R-3.6.0: cannot stat 'libRmath.a' with sh -> mksh
- 718056
- =dev-lang/R-3.6.3-r1: test failure in reg-packages.R
- 729384
- dev-lang/R-4.0.2 on HPPA with sys-devel/gcc-10 - dsvdc.f:107:34: Error: Expression at (1) must be of INTEGER type, found REAL
Change logs
- Repository mirror & CI · gentoo
Merge updates from master - Michael Orlitzky · gentoo
dev-lang/R: new version 4.0.2.
I swapped out pcre for pcre2 and had to require USE=profile to run the test suite, but other than that a copy/paste. Package-Manager: Portage-2.3.99, Repoman-2.3.22 Signed-off-by: Michael Orlitzky <mjo@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - Mark Wright · gentoo
dev-lang/R: Thanks to Neil for help with bump to 4.0.0
Closes: https://bugs.gentoo.org/719210 Package-Manager: Portage-2.3.99, Repoman-2.3.22 Signed-off-by: Mark Wright <gienah@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - Michael Orlitzky · gentoo
dev-lang/R: pull in LaTeX stuff for the test suite.
At least one test (reg-packages.R) tries to run texi2dvi which in turn looks for /usr/bin/tex, and will fail without it. This commit adds IUSE=test, and pulls in virtual/latex-base when it is set. Bug: https://bugs.gentoo.org/718056 Package-Manager: Portage-2.3.89, Repoman-2.3.20 Signed-off-by: Michael Orlitzky <mjo@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - Michael Orlitzky · gentoo
dev-lang/R: new revision that leaves more docs uncompressed.
The R interactive shell encourages users to read several documentation files using functions like contributors() and RShowDoc() that rely on the files being installed with their god-given names. This new revision tries to fix a few of the more common ones with docompress -x. Closes: https://bugs.gentoo.org/556706 Package-Manager: Portage-2.3.89, Repoman-2.3.20 Signed-off-by: Michael Orlitzky <mjo@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - Matt Turner · gentoo
*/*: Drop stable ia64 keywords
Signed-off-by: Matt Turner <mattst88@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - Michael Orlitzky · gentoo
dev-lang/R: remove old "unused" versions.
Package-Manager: Portage-2.3.89, Repoman-2.3.20 Signed-off-by: Michael Orlitzky <mjo@gentoo.org> - Michael Orlitzky · gentoo
dev-lang/R: new version 3.6.3.
I reorganized some things into BDEPEND, but other than that, a standard version bump. Package-Manager: Portage-2.3.89, Repoman-2.3.20 Signed-off-by: Michael Orlitzky <mjo@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - David Seifert · gentoo
*/*: [QA] Remove redundant --docdir/--htmldir
Closes: https://github.com/gentoo/gentoo/pull/14742 Signed-off-by: David Seifert <soap@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - David Seifert · gentoo
dev-lang/R: [QA] Fix UnnecessarySlashStrip
Signed-off-by: David Seifert <soap@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - Mark Wright · gentoo
dev-lang/R: Bump to 3.6.2
Thanks to Neil for reporting, UlvHare for testing bug #702808. Fix bug #515428 pkg-config files with wrong LDFLAGS detected, thanks to patrick for reporting. Closes: https://bugs.gentoo.org/show_bug.cgi?id=702808 Closes: https://bugs.gentoo.org/show_bug.cgi?id=515428 Package-Manager: Portage-2.3.84, Repoman-2.3.20 Signed-off-by: Mark Wright <gienah@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - Mark Wright · gentoo
dev-lang/R: Add ~arm64 since 3.4.1 has arm64
Package-Manager: Portage-2.3.84, Repoman-2.3.20 Signed-off-by: Mark Wright <gienah@gentoo.org> - Mark Wright · gentoo
dev-lang/R: Remove dep sys-freebsd/freebsd-bin
Package-Manager: Portage-2.3.84, Repoman-2.3.20 Signed-off-by: Mark Wright <gienah@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - Jeroen Roovers · gentoo
dev-lang/R: Mark ~hppa too
Package-Manager: Portage-2.3.77, Repoman-2.3.17 RepoMan-Options: --ignore-arches Signed-off-by: Jeroen Roovers <jer@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - Michał Górny · gentoo
dev-lang: Remove *-fbsd KEYWORDS
Signed-off-by: Michał Górny <mgorny@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - Aaron Bauman · gentoo
dev-lang/R: arm64 stable
Signed-off-by: Aaron Bauman <bman@gentoo.org> Package-Manager: Portage-2.3.69, Repoman-2.3.16 RepoMan-Options: --include-arches="arm64" - Repository mirror & CI · gentoo
Merge updates from master - Amy Liffey · gentoo
dev-lang/R: remove old 3.2.2, 3.3.2, 3.5.1
Signed-off-by: Amy Liffey <amynka@gentoo.org> Package-Manager: Portage-2.3.62, Repoman-2.3.11 - Amy Liffey · gentoo
dev-lang/R: version bump 3.6.0
Bug: https://bugs.gentoo.org/684526 Signed-off-by: Amy Liffey <amynka@gentoo.org> Package-Manager: Portage-2.3.62, Repoman-2.3.11 - Repository mirror & CI · gentoo
Merge updates from master - Mark Wright · gentoo
sci-mathematics/R: Bump to 3.5.3, thanks Neil for reporting
Add missing dependency net-libs/libtirpc, thanks to Victor Kustov for reporting. Change dependency from x11-libs/cairo[X] to x11-libs/cairo[X=], thanks to Cedric Sodhi for reporting, Felix W for helping. Closes: https://bugs.gentoo.org/674858 Closes: https://bugs.gentoo.org/661878 Closes: https://bugs.gentoo.org/638778 Package-Manager: Portage-2.3.62, Repoman-2.3.12 Signed-off-by: Mark Wright <gienah@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - Mikle Kolyada · gentoo
dev-lang/R: Drop hppa keyword
Signed-off-by: Mikle Kolyada <zlogene@gentoo.org> Package-Manager: Portage-2.3.49, Repoman-2.3.11 - Repository mirror & CI · gentoo
Merge updates from master - Rolf Eike Beer · gentoo
dev-lang/R: stable 3.4.1 for sparc, bug #641284
Signed-off-by: Rolf Eike Beer <eike@sf-mail.de> Package-Manager: Portage-2.3.49, Repoman-2.3.10 RepoMan-Options: --include-arches="sparc" Signed-off-by: Sergei Trofimovich <slyfox@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - Matt Turner · gentoo
dev-lang/R: drop ppc/ppc64 keywords, bug 641284 - Repository mirror & CI · gentoo
Merge updates from master - Mark Wright · gentoo
dev-lang/R: Bump to 3.5.1
Thanks to Neil for reporting, Daniel M. Weeks, John Dough and Marcel Schilling for commenting. Closes: https://bugs.gentoo.org/632364 Closes: https://bugs.gentoo.org/660294 Package-Manager: Portage-2.3.41, Repoman-2.3.9 - Repository mirror & CI · gentoo
Merge updates from master - Mark Wright · gentoo
dev-lang/R: Bump to 3.5.1 RC
Thanks to Neil for reporting, John Dough and Daniel M. Weeks for commenting. Bug: https://bugs.gentoo.org/632364 Package-Manager: Portage-2.3.41, Repoman-2.3.9 - Thomas Deutschmann · gentoo
dev-lang/R: x86 stable (bug #641284)
Package-Manager: Portage-2.3.31, Repoman-2.3.9 - Mikle Kolyada · gentoo
dev-lang/R: amd64 stable wrt bug #641284
Package-Manager: Portage-2.3.24, Repoman-2.3.6 - Sergei Trofimovich · gentoo
dev-lang/R: stable 3.4.1 for ia64, bug #641284
Bug: https://bugs.gentoo.org/641284 Package-Manager: Portage-2.3.28, Repoman-2.3.9 RepoMan-Options: --include-arches="ia64" - Justin Lecher · gentoo
dev-lang/R: Drop version failing with only zlib in tree
Package-Manager: Portage-2.3.6-prefix, Repoman-2.3.2 Signed-off-by: Justin Lecher <jlec@gentoo.org> - Sébastien Fabbro · gentoo
dev-lang/R: version bump
Package-Manager: Portage-2.3.6, Repoman-2.3.2 - Robin H. Johnson · gentoo
Drop $Id$ per council decision in bug #611234.
Signed-off-by: Robin H. Johnson <robbat2@gentoo.org> - T. Malfatti · gentoo
media-libs/portaudio: Version bump - Justin Lecher · gentoo
dev-lang/R: Backport patch for zlib-1.2.10 compatibility
Gentoo-Bug: https://bugs.gentoo.org/show_bug.cgi?id=604676 Package-Manager: Portage-2.3.3, Repoman-2.3.1 Signed-off-by: Justin Lecher <jlec@gentoo.org> - Denis Dupeyron · gentoo
dev-lang/R: bump to 3.3.2, thanks to Neil Shephard (bug #598834)
Package-Manager: portage-2.3.3 - Denis Dupeyron · gentoo
dev-lang/R: remove 3.2.5 and 3.3.0 - Denis Dupeyron · gentoo
dev-lang/R: 593420 - Denis Dupeyron · gentoo
dev-lang/R: bump to 3.3.1 - Denis Dupeyron · gentoo
dev-lang/R: bump to 3.3.0, fix bug #567488 - Denis Dupeyron · gentoo
dev-lang/R: remove 3.2.3 and 3.2.4 - Denis Dupeyron · gentoo
dev-lang/R: bump to 3.2.5 - Denis Dupeyron · gentoo
dev-lang/R: bump to 3.2.4 - Denis Dupeyron · gentoo
dev-lang/R: bump to 3.2.3 - Justin Lecher · gentoo
dev-lang/R: Clean old
Package-Manager: portage-2.2.23 Signed-off-by: Justin Lecher <jlec@gentoo.org> - Agostino Sarubbo · gentoo
dev-lang/R: ppc stable wrt bug #556422
Package-Manager: portage-2.2.20.1 RepoMan-Options: --include-arches="ppc" - Mikle Kolyada · gentoo
dev-lang/R: sparc stable wrt bug #556422
Package-Manager: portage-2.2.20.1 - Jeroen Roovers · gentoo
dev-lang/R: Stable for HPPA PPC64 (bug #556422).
Package-Manager: portage-2.2.20.1 RepoMan-Options: --ignore-arches - Mikle Kolyada · gentoo
dev-lang/R: ia64 stable wrt bug #556422
Package-Manager: portage-2.2.20.1 - Agostino Sarubbo · gentoo
dev-lang/R: x86 stable wrt bug #556422
Package-Manager: portage-2.2.20.1 RepoMan-Options: --include-arches="x86" - Agostino Sarubbo · gentoo
dev-lang/R: amd64 stable wrt bug #556422
Package-Manager: portage-2.2.20.1 RepoMan-Options: --include-arches="amd64" - Justin Lecher · gentoo
Use https by default
Convert all URLs for sites supporting encrypted connections from http to https Signed-off-by: Justin Lecher <jlec@gentoo.org> - Denis Dupeyron · gentoo
dev-lang/R: bump to 3.2.2
Gentoo-Bug: 557600 Package-Manager: portage-2.2.20.1 - Robin H. Johnson · gentoo
proj/gentoo: Initial commit
This commit represents a new era for Gentoo: Storing the gentoo-x86 tree in Git, as converted from CVS. This commit is the start of the NEW history. Any historical data is intended to be grafted onto this point. Creation process: 1. Take final CVS checkout snapshot 2. Remove ALL ChangeLog* files 3. Transform all Manifests to thin 4. Remove empty Manifests 5. Convert all stale $Header$/$Id$ CVS keywords to non-expanded Git $Id$ 5.1. Do not touch files with -kb/-ko keyword flags. Signed-off-by: Robin H. Johnson <robbat2@gentoo.org> X-Thanks: Alec Warner <antarus@gentoo.org> - did the GSoC 2006 migration tests X-Thanks: Robin H. Johnson <robbat2@gentoo.org> - infra guy, herding this project X-Thanks: Nguyen Thai Ngoc Duy <pclouds@gentoo.org> - Former Gentoo developer, wrote Git features for the migration X-Thanks: Brian Harring <ferringb@gentoo.org> - wrote much python to improve cvs2svn X-Thanks: Rich Freeman <rich0@gentoo.org> - validation scripts X-Thanks: Patrick Lauer <patrick@gentoo.org> - Gentoo dev, running new 2014 work in migration X-Thanks: Michał Górny <mgorny@gentoo.org> - scripts, QA, nagging X-Thanks: All of other Gentoo developers - many ideas and lots of paint on the bikeshed