Summary
R is GNU S, a system for statistical computation and graphics. It consists of a language plus a run-time environment with graphics, a debugger, access to certain system functions, and the ability to run programs stored in script files. The core of R is an interpreted computer language which allows branching and looping as well as modular programming using functions. The R distribution contains functionality for a large number of statistical procedures such as: linear and generalized linear models, nonlinear regression models, time series analysis, classical parametric and nonparametric tests, clustering, smoothing and graphical data representations. Additional modules ("add-on packages") are available for a variety of specific purposes but are not distributed with this package.
Versions
v4.5.0 :: 0 :: gentoo
- Modified
- License
- || ( GPL-2 GPL-3 ) LGPL-2.1
- Keywords
- ~amd64 ~amd64-linux ~arm64 ~arm64-macos ~hppa ~loong ~sparc ~x64-macos ~x86 ~x86-linux
- USE flags
- X cairo doc icu java jpeg libdeflate lto minimal nls openmp perl png prefix profile readline test tiff tk
v4.4.3 :: 0 :: gentoo
- Modified
- License
- || ( GPL-2 GPL-3 ) LGPL-2.1
- Keywords
- ~amd64 ~amd64-linux ~arm64 ~arm64-macos ~hppa ~loong ~sparc ~x64-macos ~x86 ~x86-linux
- USE flags
- X cairo doc icu java jpeg libdeflate lto minimal nls openmp perl png prefix profile readline test tiff tk
v4.4.1 :: 0 :: gentoo
- Modified
- License
- || ( GPL-2 GPL-3 ) LGPL-2.1
- Keywords
- amd64 arm64 sparc ~amd64-linux ~arm64-macos ~hppa ~loong ~x64-macos ~x86 ~x86-linux
- USE flags
- X cairo doc icu java jpeg libdeflate lto minimal nls openmp perl png prefix profile readline test tiff tk
USE flags
General
- X
- Add support for X11
- cairo
- Enable support for the cairo graphics library
- doc
- Add extra documentation (API, Javadoc, etc). It is recommended to enable per package instead of globally
- icu
- Enable ICU (Internationalization Components for Unicode) support, using dev-libs/icu
- java
- Add support for Java
- jpeg
- Add JPEG image support
- libdeflate
- Use app-arch/libdeflate rather than sys-libs/zlib for lazy-loaded R objects.
- lto
- Enable Link-Time Optimization (LTO) to optimize the build
- minimal
- Install a very minimal build (disables, for example, plugins, fonts, most drivers, non-critical features)
- nls
- Add Native Language Support (using gettext - GNU locale utilities)
- openmp
- Build support for the OpenMP (support parallel computing), requires >=sys-devel/gcc-4.2 built with USE="openmp"
- perl
- Add optional support/bindings for the Perl language
- png
- Add support for libpng (PNG images)
- prefix
- Defines if a Gentoo Prefix offset installation is used
- profile
- Add support for software performance analysis (will likely vary from ebuild to ebuild)
- readline
- Enable support for libreadline, a GNU line-editing library that almost everyone wants
- test
- Enable dependencies and/or preparations necessary to run tests (usually controlled by FEATURES=test but can be toggled independently)
- tiff
- Add support for the TIFF image format
- tk
- Add support for Tk GUI toolkit
Dependencies
app-arch / bzip2 : A high-quality data compressor used extensively by Gentoo Linux
app-arch / libdeflate : Heavily optimized DEFLATE/zlib/gzip (de)compression
app-arch / xz-utils : Utils for managing LZMA compressed files
app-arch / zstd : zstd fast compression library
app-text / ghostscript-gpl : Interpreter for the PostScript language and PDF
dev-lang / perl : Larry Wall's Practical Extraction and Report Language
dev-lang / tcl : Tool Command Language
dev-libs / icu : International Components for Unicode
dev-libs / libpcre2 : Perl-compatible regular expression library
dev-libs / tre : Lightweight, robust, and efficient POSIX compliant regexp matching library
media-libs / libjpeg-turbo : MMX, SSE, and SSE2 SIMD accelerated JPEG library
media-libs / libpng : Portable Network Graphics library
media-libs / tiff : Tag Image File Format (TIFF) library
net-libs / libtirpc : Transport Independent RPC library (SunRPC replacement)
net-misc / curl : A Client that groks URLs
sys-apps / coreutils : Standard GNU utilities (chmod, cp, dd, ls, sort, tr, head, wc, who,...)
sys-libs / readline : Another cute console display library
sys-libs / timezone-data : Timezone data (/usr/share/zoneinfo) and utilities (tzselect/zic/zdump)
sys-libs / zlib : Standard (de)compression library
virtual / blas : Virtual for FORTRAN 77 BLAS implementation
virtual / fortran : Virtual for Fortran Compiler
virtual / lapack : Virtual for Linear Algebra Package FORTRAN 77 (LAPACK) implementation
x11-libs / cairo : A vector graphics library with cross-device output support
x11-libs / libX11 : X.Org X11 library
x11-libs / libXmu : X.Org Xmu library
x11-libs / libXt : X.Org X Toolkit Intrinsics library
x11-libs / pango : Internationalized text layout and rendering library
Runtime Dependencies
app-arch / bzip2 : A high-quality data compressor used extensively by Gentoo Linux
app-arch / libdeflate : Heavily optimized DEFLATE/zlib/gzip (de)compression
app-arch / xz-utils : Utils for managing LZMA compressed files
app-arch / zstd : zstd fast compression library
app-text / ghostscript-gpl : Interpreter for the PostScript language and PDF
dev-lang / perl : Larry Wall's Practical Extraction and Report Language
dev-lang / tcl : Tool Command Language
dev-libs / icu : International Components for Unicode
dev-libs / libpcre2 : Perl-compatible regular expression library
dev-libs / tre : Lightweight, robust, and efficient POSIX compliant regexp matching library
media-libs / libjpeg-turbo : MMX, SSE, and SSE2 SIMD accelerated JPEG library
media-libs / libpng : Portable Network Graphics library
media-libs / tiff : Tag Image File Format (TIFF) library
net-libs / libtirpc : Transport Independent RPC library (SunRPC replacement)
net-misc / curl : A Client that groks URLs
sys-apps / coreutils : Standard GNU utilities (chmod, cp, dd, ls, sort, tr, head, wc, who,...)
sys-libs / readline : Another cute console display library
sys-libs / timezone-data : Timezone data (/usr/share/zoneinfo) and utilities (tzselect/zic/zdump)
sys-libs / zlib : Standard (de)compression library
virtual / blas : Virtual for FORTRAN 77 BLAS implementation
virtual / fortran : Virtual for Fortran Compiler
virtual / jre : Virtual for Java Runtime Environment (JRE)
virtual / lapack : Virtual for Linear Algebra Package FORTRAN 77 (LAPACK) implementation
x11-libs / cairo : A vector graphics library with cross-device output support
x11-libs / libX11 : X.Org X11 library
x11-libs / libXmu : X.Org Xmu library
x11-libs / libXt : X.Org X Toolkit Intrinsics library
x11-libs / pango : Internationalized text layout and rendering library
Depending packages
app-vim / vim-r : vim plugin: integrate vim with R
dev-db / plr : R language extension for postgresql database
dev-lang / yap : YAP is a high-performance Prolog compiler
dev-python / rpy2 : Python interface to the R language
dev-util / diffoscope : Will try to get to the bottom of what makes files or directories different
kde-apps / cantor : Interface for doing mathematics and scientific computing
sci-mathematics / gretl : Regression, econometrics and time-series library
sci-mathematics / mathematica : Wolfram Mathematica
sci-mathematics / rkward : IDE for the R-project
sci-physics / root : C++ data analysis framework and interpreter from CERN
Bugs
- 518066
- www-server/shiny-server - a server for hosting Shiny applicatins, web-sites written in dev-lang/R for interactive data analysis
- 729384
- >=dev-lang/R-4.0.2[-lapack] on HPPA with >=sys-devel/gcc-10 - dsvdc.f:107:34: Error: Expression at (1) must be of INTEGER type, found REAL
- 765361
- <dev-lang/R-4.0.4: code execution via malicious CRAN package (CVE-2020-27637)
- 879193
- dev-lang/R-4.2.1 - ld: ../../lib/libR.so: undefined reference to `libintl_dgettext' (on musl)
- 882443
- sci-mathematics/jags: configure breakage with Clang 16 (uses outdated dev-lang/R R.m4 macro)
- 884333
- dev-lang/R-4.2.1 fails to compile vignette (reshape.tex)
- 889742
- dev-lang/R-4.3.2-r1 fails to compile with dev-libs/tre[debug]: R: tre-parse.c:131: tre_expand_ctype: Assertion TRE_MB_CUR_MAX == 1 failed
- 911553
- ERROR: dev-lang/R-4.3.1::gentoo_prefix failed on macOS
- 920023
- dev-lang/R-4.3.2: configure: error: which is required but missing
- 922673
- dev-lang/R-4.3.2-r1 fails to compile (MUSL-SYSTEM): configure: error: date-time conversions do not work in 2020 is tzdata installed?
- 922910
- dev-lang/R-4.3.1-r1 - cp: cannot stat 'libRmath.a': No such file or directory with app-alternatives/sh[lksh]
- 935413
- dev-lang/R-4.3.1-r1 test fail
- 936276
- dev-lang/R-4.3.1-r1 fails to compile with clang-17 if USE="lto" is enabled
- 942665
- dev-lang/R-4.4.1 - R: tre-parse.c:131: tre_expand_ctype: Assertion TRE_MB_CUR_MAX == 1 failed.
- 943342
- dev-lang/R: double to long int casts overflows gc variable in memory.c
- 943502
- dev-lang/R-4.4.2 installs shared libraries that lack a SONAME
- 950008
- dev-lang/R-4.4.2 fails test - [texlive] [gcc-15] Error: running examples in utils-Ex.R failed
Change logs
- Repository mirror & CI · gentoo
Merge updates from master - Sam James · gentoo
dev-lang/R: fix build w/ USE=-doc in some cases
Avoid automagically finding (incomplete) TL components if USE=-doc where not all required files may be available. Closes: https://bugs.gentoo.org/912762 Closes: https://bugs.gentoo.org/958949 Signed-off-by: Sam James <sam@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - Alfred Wingate · gentoo
dev-lang/R: drop 4.4.2
Signed-off-by: Alfred Wingate <parona@protonmail.com> Part-of: https://github.com/gentoo/gentoo/pull/42337 Closes: https://github.com/gentoo/gentoo/pull/42337 Signed-off-by: Sam James <sam@gentoo.org> - Alfred Wingate · gentoo
dev-lang/R: add 4.5.0
Closes: https://bugs.gentoo.org/956338 Signed-off-by: Alfred Wingate <parona@protonmail.com> Part-of: https://github.com/gentoo/gentoo/pull/42337 Signed-off-by: Sam James <sam@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - David Seifert · gentoo
dev-lang/R: drop 4.3.1-r1, 4.3.2-r1
Signed-off-by: David Seifert <soap@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - David Seifert · gentoo
dev-lang/R: add 4.4.3
Signed-off-by: David Seifert <soap@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - Sam James · gentoo
dev-lang/R: build w/ -std=gnu17
The next release of R should be OK. Closes: https://bugs.gentoo.org/944066 Signed-off-by: Sam James <sam@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - David Seifert · gentoo
dev-lang/R: add 4.4.2
Signed-off-by: David Seifert <soap@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - Sam James · gentoo
dev-lang/R: Stabilize 4.4.1 amd64, #940022
Signed-off-by: Sam James <sam@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - Arthur Zamarin · gentoo
dev-lang/R: Stabilize 4.4.1 arm64, #940022
Signed-off-by: Arthur Zamarin <arthurzam@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - Sam James · gentoo
dev-lang/R: Stabilize 4.4.1 sparc, #940022
Signed-off-by: Sam James <sam@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - Arthur Zamarin · gentoo
*/*: unkeyword ~ia64
Change was created by running the following command:: ekeyword ^ia64 */*/*.ebuild Signed-off-by: Arthur Zamarin <arthurzam@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - Alfred Wingate · gentoo
dev-lang/R: fixes for 4.4.1
* Lapack symbols (zspmv) required for Blas, therefore build with lapack unconditionally. * Add and enable by default libdeflate support to conform with upstream defaults. * Require timezone-data which is needed, it would be missing on non glibc systems by default. Closes: https://github.com/gentoo/gentoo/pull/36418 Bug: https://bugs.gentoo.org/922673 Signed-off-by: Alfred Wingate <parona@protonmail.com> Signed-off-by: David Seifert <soap@gentoo.org> - David Seifert · gentoo
dev-lang/R: add 4.4.1
Closes: https://bugs.gentoo.org/930652 Signed-off-by: David Seifert <soap@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - Sam James · gentoo
dev-lang/R: BDEPEND on which
`configure: error: which is required but missing` Signed-off-by: Sam James <sam@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - Arthur Zamarin · gentoo
dev-lang/R: remove mention of app-misc/realpath
Bug: https://bugs.gentoo.org/908406 Signed-off-by: Arthur Zamarin <arthurzam@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - David Seifert · gentoo
dev-lang/R: add 4.3.2
Signed-off-by: David Seifert <soap@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - Michael Orlitzky · gentoo
dev-lang/R: eliminate pointless use of mirror://
The list of "cran" mirrors contains exactly one working mirror, and that is the official upstream. Let's listen to the devmanual and inline that location into SRC_URI. Signed-off-by: Michael Orlitzky <mjo@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - David Seifert · gentoo
dev-lang/R: drop 4.3.0
Signed-off-by: David Seifert <soap@gentoo.org> - Arthur Zamarin · gentoo
dev-lang/R: Stabilize 4.3.1 sparc, #913676
Signed-off-by: Arthur Zamarin <arthurzam@gentoo.org> - Arthur Zamarin · gentoo
dev-lang/R: Stabilize 4.3.1 arm64, #913676
Signed-off-by: Arthur Zamarin <arthurzam@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - Sam James · gentoo
dev-lang/R: Stabilize 4.3.1 amd64, #913676
Signed-off-by: Sam James <sam@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - Benda Xu · gentoo
dev-lang/R: add 4.3.1 and keyword {x,arm}64-macos.
Disable aqua in all cases. dev-libs/tre: keyword 0.8.0_p20210321-r3 Closes: https://bugs.gentoo.org/878103 Signed-off-by: Benda Xu <heroxbd@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - David Seifert · gentoo
dev-lang/R: ignore false positive '-Wimplicit-function-declaration'
Signed-off-by: David Seifert <soap@gentoo.org> - David Seifert · gentoo
dev-lang/R: rebase patches
Signed-off-by: David Seifert <soap@gentoo.org> - David Seifert · gentoo
dev-lang/R: drop 4.2.3
Signed-off-by: David Seifert <soap@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - Arthur Zamarin · gentoo
dev-lang/R: Stabilize 4.3.0 amd64, #908850
Signed-off-by: Arthur Zamarin <arthurzam@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - Sam James · gentoo
dev-lang/R: Stabilize 4.3.0 sparc, #908850
Signed-off-by: Sam James <sam@gentoo.org> - Sam James · gentoo
dev-lang/R: Stabilize 4.3.0 arm64, #908850
Signed-off-by: Sam James <sam@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - Arthur Zamarin · gentoo
dev-lang/R: destabilize for ~x86
Signed-off-by: Arthur Zamarin <arthurzam@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - David Seifert · gentoo
dev-lang/R: drop 4.2.1, 4.2.2
Signed-off-by: David Seifert <soap@gentoo.org> - David Seifert · gentoo
dev-lang/R: add 4.3.0
Closes: https://bugs.gentoo.org/905815 Signed-off-by: David Seifert <soap@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - Arthur Zamarin · gentoo
dev-lang/R: Stabilize 4.2.3 x86, #905144
Signed-off-by: Arthur Zamarin <arthurzam@gentoo.org> - Arthur Zamarin · gentoo
dev-lang/R: Stabilize 4.2.3 arm64, #905144
Signed-off-by: Arthur Zamarin <arthurzam@gentoo.org> - Arthur Zamarin · gentoo
dev-lang/R: Stabilize 4.2.3 sparc, #905144
Signed-off-by: Arthur Zamarin <arthurzam@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - Sam James · gentoo
dev-lang/R: Stabilize 4.2.3 amd64, #905144
Signed-off-by: Sam James <sam@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - Alexandre Ferreira · gentoo
dev-lang/R: add patch for curl 8
Closes: https://bugs.gentoo.org/902993 Signed-off-by: David Seifert <soap@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - Michael Orlitzky · gentoo
dev-lang/R: add 4.2.3
I've also dropped R-3.4.1-rmath-shared.patch in this version. It was rejected upstream as-is, and while I thought there was an --as-needed fix hidden in there, I was apparently mistaken. It builds fine now without the patch. Signed-off-by: Michael Orlitzky <mjo@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - WANG Xuerui · gentoo
dev-lang/R: keyword 4.2.2 for ~loong
Signed-off-by: WANG Xuerui <xen0n@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - Michael Orlitzky · gentoo
dev-lang/R: attempt to fix the parallel install.
We have had an "emake -j1 ... install" in this ebuild for a long time, but bug 883063 shows that -j1 only minimizes the risk of failure, and does not completely eliminate it. I've tried to reproduce the failure and have found a missing dependency in the upstream Makefile. This commit adds a patch to fix it. Now, we have one fewer build system bugs. I've removed the old -j1 workaround, and am marking bug 883063 as resolved so that future installation failures are reported as new bugs: we need new reports to let us know that the bug fixed in this commit was not the only one, if that happens to be the case. Closes: https://bugs.gentoo.org/883063 Signed-off-by: Michael Orlitzky <mjo@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - Michael Orlitzky · gentoo
dev-lang/R: add upstream patch to fix USE="-readline" build.
Closes: https://bugs.gentoo.org/883395 Signed-off-by: Michael Orlitzky <mjo@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - Michael Orlitzky · gentoo
dev-lang/R: add 4.2.2
My upstream patches to the R_BROWSER and R_PDFVIEWER search order didn't land in this release, but we're already running eautoreconf, so we might as well include them. This lets us drop the dependency on xdg-utils, and remove the stanza (conditional on USE=X) that sets the default browser and viewer to xdg-open. We are also able to drop a patch to the test suite that was merged upstream. Closes: https://bugs.gentoo.org/458176 Closes: https://bugs.gentoo.org/879863 Signed-off-by: Michael Orlitzky <mjo@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - Sam James · gentoo
dev-lang/R: make libtirpc dep linux-only
Unnecessary on macOS. Bug: https://bugs.gentoo.org/878101 Signed-off-by: Sam James <sam@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - Michael Orlitzky · gentoo
dev-lang/R: backport a fix for a broken test.
This isn't a critical fix by any means, but otherwise we're likely to forget to re-enable this test when R-4.2.2 comes out. Signed-off-by: Michael Orlitzky <mjo@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - David Seifert · gentoo
dev-lang/R: drop 4.2.0
Signed-off-by: David Seifert <soap@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - Agostino Sarubbo · gentoo
dev-lang/R: x86 stable wrt bug #867418
Signed-off-by: Agostino Sarubbo <ago@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - Sam James · gentoo
dev-lang/R: Stabilize 4.2.1 amd64, #867418
Signed-off-by: Sam James <sam@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - Arthur Zamarin · gentoo
dev-lang/R: Stabilize 4.2.1 sparc, #867418
Signed-off-by: Arthur Zamarin <arthurzam@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - Arthur Zamarin · gentoo
dev-lang/R: Stabilize 4.2.1 arm64, #867418
Signed-off-by: Arthur Zamarin <arthurzam@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - David Seifert · gentoo
dev-lang/R: add 4.2.1
Closes: https://bugs.gentoo.org/856622 Signed-off-by: David Seifert <soap@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - David Seifert · gentoo
dev-lang/R: update jpeg dep
Signed-off-by: David Seifert <soap@gentoo.org> - David Seifert · gentoo
dev-lang/R: drop 4.1.2-r1
Signed-off-by: David Seifert <soap@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - Jakov Smolić · gentoo
dev-lang/R: Stabilize 4.2.0 arm64, #851024
Signed-off-by: Jakov Smolić <jsmolic@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - Repository mirror & CI · gentoo
Merge updates from master - Agostino Sarubbo · gentoo
dev-lang/R: x86 stable wrt bug #851024
Package-Manager: Portage-3.0.30, Repoman-3.0.3 RepoMan-Options: --include-arches="x86" Signed-off-by: Agostino Sarubbo <ago@gentoo.org> - Agostino Sarubbo · gentoo
dev-lang/R: amd64 stable wrt bug #851024
Package-Manager: Portage-3.0.30, Repoman-3.0.3 RepoMan-Options: --include-arches="amd64" Signed-off-by: Agostino Sarubbo <ago@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - Jakov Smolić · gentoo
dev-lang/R: Stabilize 4.2.0 sparc, #851024
Signed-off-by: Jakov Smolić <jsmolic@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - Michael Orlitzky · gentoo
dev-lang/R: remove old "unused" R-4.0.5-r1.ebuild.
Closes: https://bugs.gentoo.org/836053 Package-Manager: Portage-3.0.30, Repoman-3.0.3 Signed-off-by: Michael Orlitzky <mjo@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - Sam James · gentoo
dev-lang/R: Stabilize 4.1.2-r1 arm64, #843221
Signed-off-by: Sam James <sam@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - Repository mirror & CI · gentoo
Merge updates from master - Arthur Zamarin · gentoo
dev-lang/R: Stabilize 4.1.2-r1 sparc, #843221
Signed-off-by: Arthur Zamarin <arthurzam@gentoo.org> - David Seifert · gentoo
dev-lang/R: drop 4.1.0-r2, 4.1.2
Signed-off-by: David Seifert <soap@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - Repository mirror & CI · gentoo
Merge updates from master - Jakov Smolić · gentoo
dev-lang/R: Stabilize 4.1.2-r1 x86, #843221
Signed-off-by: Jakov Smolić <jsmolic@gentoo.org> - Jakov Smolić · gentoo
dev-lang/R: Stabilize 4.1.2-r1 amd64, #843221
Signed-off-by: Jakov Smolić <jsmolic@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - Michael Orlitzky · gentoo
dev-lang/R: new upstream version R-4.2.0.
Package-Manager: Portage-3.0.30, Repoman-3.0.3 Signed-off-by: Michael Orlitzky <mjo@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - Alessandro Barbieri · gentoo
dev-lang/R: enable system tre
Closes: https://bugs.gentoo.org/802099 Signed-off-by: Alessandro Barbieri <lssndrbarbieri@gmail.com> Signed-off-by: Patrice Clement <monsieurp@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - David Seifert · gentoo
dev-lang/R: add 4.1.2
Closes: https://bugs.gentoo.org/808711 Signed-off-by: David Seifert <soap@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - Volkmar W. Pogatzki · gentoo
dev-lang/R: remove 4.0.4
Closes: https://github.com/gentoo/gentoo/pull/22680 Closes: https://bugs.gentoo.org/801145 Package-Manager: Portage-3.0.20, Repoman-3.0.3 Signed-off-by: Volkmar W. Pogatzki <gentoo@pogatzki.net> Signed-off-by: David Seifert <soap@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - Sam James · gentoo
dev-lang/R: Stabilize 4.0.5-r1 arm64, #801145
Signed-off-by: Sam James <sam@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - Sam James · gentoo
dev-lang/R: Stabilize 4.0.5-r1 x86, #801145
Signed-off-by: Sam James <sam@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - Sam James · gentoo
dev-lang/R: revbump for fixed econf arguments
We need to revbump for cases like this to ensure that the user's preferences/USE flags were fully respected (and done so correctly). Fixes: b5ca7094608362020c06f80bb01ee6b872c029c0 Bug: https://bugs.gentoo.org/801928 Signed-off-by: Sam James <sam@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - Benda Xu · gentoo
dev-lang/R: fix econf arguments.
mjo has forgotten to append '\' to include the arguments after lto. Reference: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=6b3b5b20fe9c71906a674908c8dd08d38706804b Closes: https://bugs.gentoo.org/801928 Closes: https://github.com/gentoo/gentoo/pull/21626 Package-Manager: Portage-3.0.20, Repoman-3.0.3 Signed-off-by: Benda Xu <heroxbd@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - Michael Orlitzky · gentoo
dev-lang/R: add missing x11-libs/libXt dependency.
Closes: https://bugs.gentoo.org/801910 Package-Manager: Portage-3.0.20, Repoman-3.0.2 Signed-off-by: Michael Orlitzky <mjo@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - Michael Orlitzky · gentoo
dev-lang/R: new version 4.1.0.
New upstream version with a few other ebuild improvements: * Use https in HOMEPAGE. * Remove workaround for upstream bug 17836. * Add support (USE=lto) for link-time optimization. * Remove an old gcc-4.x workaround. Closes: https://bugs.gentoo.org/792426 Package-Manager: Portage-3.0.20, Repoman-3.0.2 Signed-off-by: Michael Orlitzky <mjo@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - Rolf Eike Beer · gentoo
dev-lang/R: stable 4.0.5-r1 for sparc, bug #801145
Package-Manager: Portage-3.0.20, Repoman-3.0.2 RepoMan-Options: --include-arches="sparc" Signed-off-by: Rolf Eike Beer <eike@sf-mail.de> Signed-off-by: Sam James <sam@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - Sam James · gentoo
dev-lang/R: Stabilize 4.0.5-r1 amd64, #801145
Signed-off-by: Sam James <sam@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - Pacho Ramos · gentoo
dev-lang/R: Supports newer java
Closes: https://bugs.gentoo.org/787350 Package-Manager: Portage-3.0.19, Repoman-3.0.3 Signed-off-by: Pacho Ramos <pacho@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - David Seifert · gentoo
dev-lang/R: Remove old 3.4.1, 3.6.3-r1, 4.0.2
Bug: https://bugs.gentoo.org/765361 Closes: https://bugs.gentoo.org/776781 Package-Manager: Portage-3.0.18, Repoman-3.0.3 Signed-off-by: David Seifert <soap@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - Sam James · gentoo
dev-lang/R: eutils--
Signed-off-by: Sam James <sam@gentoo.org> - Sam James · gentoo
dev-lang/R: eutils--
Signed-off-by: Sam James <sam@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - Rolf Eike Beer · gentoo
dev-lang/R: stable 4.0.4 for sparc, bug #765361
Package-Manager: Portage-3.0.17, Repoman-3.0.2 RepoMan-Options: --include-arches="sparc" Signed-off-by: Rolf Eike Beer <eike@sf-mail.de> Signed-off-by: Sergei Trofimovich <slyfox@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - Mikle Kolyada · gentoo
dev-lang/R: Version bump (v4.0.5)
Package-Manager: Portage-3.0.17, Repoman-3.0.2 Signed-off-by: Mikle Kolyada <zlogene@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - Sam James · gentoo
dev-lang/R: Stabilize 4.0.4 arm64, #765361
Signed-off-by: Sam James <sam@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - Sam James · gentoo
dev-lang/R: Stabilize 4.0.4 x86, #765361
Signed-off-by: Sam James <sam@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - Mikle Kolyada · gentoo
dev-lang/R: Stabilize 4.0.4 amd64, #765361
Signed-off-by: Mikle Kolyada <zlogene@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - Mikle Kolyada · gentoo
dev-lang/R: Version bump (v4.0.4)
Package-Manager: Portage-3.0.13, Repoman-3.0.2 Signed-off-by: Mikle Kolyada <zlogene@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - Fabian Groffen · gentoo
dev-lang/R: drop ~x64-macos keyword
Closes: https://bugs.gentoo.org/575860 Package-Manager: Portage-3.0.9, Repoman-3.0.2 Signed-off-by: Fabian Groffen <grobian@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - Michael Orlitzky · gentoo
dev-lang/R: new version 4.0.2.
I swapped out pcre for pcre2 and had to require USE=profile to run the test suite, but other than that a copy/paste. Package-Manager: Portage-2.3.99, Repoman-2.3.22 Signed-off-by: Michael Orlitzky <mjo@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - Mark Wright · gentoo
dev-lang/R: Thanks to Neil for help with bump to 4.0.0
Closes: https://bugs.gentoo.org/719210 Package-Manager: Portage-2.3.99, Repoman-2.3.22 Signed-off-by: Mark Wright <gienah@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - Michael Orlitzky · gentoo
dev-lang/R: pull in LaTeX stuff for the test suite.
At least one test (reg-packages.R) tries to run texi2dvi which in turn looks for /usr/bin/tex, and will fail without it. This commit adds IUSE=test, and pulls in virtual/latex-base when it is set. Bug: https://bugs.gentoo.org/718056 Package-Manager: Portage-2.3.89, Repoman-2.3.20 Signed-off-by: Michael Orlitzky <mjo@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - Michael Orlitzky · gentoo
dev-lang/R: new revision that leaves more docs uncompressed.
The R interactive shell encourages users to read several documentation files using functions like contributors() and RShowDoc() that rely on the files being installed with their god-given names. This new revision tries to fix a few of the more common ones with docompress -x. Closes: https://bugs.gentoo.org/556706 Package-Manager: Portage-2.3.89, Repoman-2.3.20 Signed-off-by: Michael Orlitzky <mjo@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - Matt Turner · gentoo
*/*: Drop stable ia64 keywords
Signed-off-by: Matt Turner <mattst88@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - Michael Orlitzky · gentoo
dev-lang/R: remove old "unused" versions.
Package-Manager: Portage-2.3.89, Repoman-2.3.20 Signed-off-by: Michael Orlitzky <mjo@gentoo.org> - Michael Orlitzky · gentoo
dev-lang/R: new version 3.6.3.
I reorganized some things into BDEPEND, but other than that, a standard version bump. Package-Manager: Portage-2.3.89, Repoman-2.3.20 Signed-off-by: Michael Orlitzky <mjo@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - David Seifert · gentoo
*/*: [QA] Remove redundant --docdir/--htmldir
Closes: https://github.com/gentoo/gentoo/pull/14742 Signed-off-by: David Seifert <soap@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - David Seifert · gentoo
dev-lang/R: [QA] Fix UnnecessarySlashStrip
Signed-off-by: David Seifert <soap@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - Mark Wright · gentoo
dev-lang/R: Bump to 3.6.2
Thanks to Neil for reporting, UlvHare for testing bug #702808. Fix bug #515428 pkg-config files with wrong LDFLAGS detected, thanks to patrick for reporting. Closes: https://bugs.gentoo.org/show_bug.cgi?id=702808 Closes: https://bugs.gentoo.org/show_bug.cgi?id=515428 Package-Manager: Portage-2.3.84, Repoman-2.3.20 Signed-off-by: Mark Wright <gienah@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - Mark Wright · gentoo
dev-lang/R: Add ~arm64 since 3.4.1 has arm64
Package-Manager: Portage-2.3.84, Repoman-2.3.20 Signed-off-by: Mark Wright <gienah@gentoo.org> - Mark Wright · gentoo
dev-lang/R: Remove dep sys-freebsd/freebsd-bin
Package-Manager: Portage-2.3.84, Repoman-2.3.20 Signed-off-by: Mark Wright <gienah@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - Jeroen Roovers · gentoo
dev-lang/R: Mark ~hppa too
Package-Manager: Portage-2.3.77, Repoman-2.3.17 RepoMan-Options: --ignore-arches Signed-off-by: Jeroen Roovers <jer@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - Michał Górny · gentoo
dev-lang: Remove *-fbsd KEYWORDS
Signed-off-by: Michał Górny <mgorny@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - Aaron Bauman · gentoo
dev-lang/R: arm64 stable
Signed-off-by: Aaron Bauman <bman@gentoo.org> Package-Manager: Portage-2.3.69, Repoman-2.3.16 RepoMan-Options: --include-arches="arm64" - Repository mirror & CI · gentoo
Merge updates from master - Amy Liffey · gentoo
dev-lang/R: remove old 3.2.2, 3.3.2, 3.5.1
Signed-off-by: Amy Liffey <amynka@gentoo.org> Package-Manager: Portage-2.3.62, Repoman-2.3.11 - Amy Liffey · gentoo
dev-lang/R: version bump 3.6.0
Bug: https://bugs.gentoo.org/684526 Signed-off-by: Amy Liffey <amynka@gentoo.org> Package-Manager: Portage-2.3.62, Repoman-2.3.11 - Repository mirror & CI · gentoo
Merge updates from master - Mark Wright · gentoo
sci-mathematics/R: Bump to 3.5.3, thanks Neil for reporting
Add missing dependency net-libs/libtirpc, thanks to Victor Kustov for reporting. Change dependency from x11-libs/cairo[X] to x11-libs/cairo[X=], thanks to Cedric Sodhi for reporting, Felix W for helping. Closes: https://bugs.gentoo.org/674858 Closes: https://bugs.gentoo.org/661878 Closes: https://bugs.gentoo.org/638778 Package-Manager: Portage-2.3.62, Repoman-2.3.12 Signed-off-by: Mark Wright <gienah@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - Mikle Kolyada · gentoo
dev-lang/R: Drop hppa keyword
Signed-off-by: Mikle Kolyada <zlogene@gentoo.org> Package-Manager: Portage-2.3.49, Repoman-2.3.11 - Repository mirror & CI · gentoo
Merge updates from master - Rolf Eike Beer · gentoo
dev-lang/R: stable 3.4.1 for sparc, bug #641284
Signed-off-by: Rolf Eike Beer <eike@sf-mail.de> Package-Manager: Portage-2.3.49, Repoman-2.3.10 RepoMan-Options: --include-arches="sparc" Signed-off-by: Sergei Trofimovich <slyfox@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - Matt Turner · gentoo
dev-lang/R: drop ppc/ppc64 keywords, bug 641284 - Repository mirror & CI · gentoo
Merge updates from master - Mark Wright · gentoo
dev-lang/R: Bump to 3.5.1
Thanks to Neil for reporting, Daniel M. Weeks, John Dough and Marcel Schilling for commenting. Closes: https://bugs.gentoo.org/632364 Closes: https://bugs.gentoo.org/660294 Package-Manager: Portage-2.3.41, Repoman-2.3.9 - Repository mirror & CI · gentoo
Merge updates from master - Mark Wright · gentoo
dev-lang/R: Bump to 3.5.1 RC
Thanks to Neil for reporting, John Dough and Daniel M. Weeks for commenting. Bug: https://bugs.gentoo.org/632364 Package-Manager: Portage-2.3.41, Repoman-2.3.9 - Thomas Deutschmann · gentoo
dev-lang/R: x86 stable (bug #641284)
Package-Manager: Portage-2.3.31, Repoman-2.3.9 - Mikle Kolyada · gentoo
dev-lang/R: amd64 stable wrt bug #641284
Package-Manager: Portage-2.3.24, Repoman-2.3.6 - Sergei Trofimovich · gentoo
dev-lang/R: stable 3.4.1 for ia64, bug #641284
Bug: https://bugs.gentoo.org/641284 Package-Manager: Portage-2.3.28, Repoman-2.3.9 RepoMan-Options: --include-arches="ia64" - Justin Lecher · gentoo
dev-lang/R: Drop version failing with only zlib in tree
Package-Manager: Portage-2.3.6-prefix, Repoman-2.3.2 Signed-off-by: Justin Lecher <jlec@gentoo.org> - Sébastien Fabbro · gentoo
dev-lang/R: version bump
Package-Manager: Portage-2.3.6, Repoman-2.3.2 - Robin H. Johnson · gentoo
Drop $Id$ per council decision in bug #611234.
Signed-off-by: Robin H. Johnson <robbat2@gentoo.org> - T. Malfatti · gentoo
media-libs/portaudio: Version bump - Justin Lecher · gentoo
dev-lang/R: Backport patch for zlib-1.2.10 compatibility
Gentoo-Bug: https://bugs.gentoo.org/show_bug.cgi?id=604676 Package-Manager: Portage-2.3.3, Repoman-2.3.1 Signed-off-by: Justin Lecher <jlec@gentoo.org> - Denis Dupeyron · gentoo
dev-lang/R: bump to 3.3.2, thanks to Neil Shephard (bug #598834)
Package-Manager: portage-2.3.3 - Denis Dupeyron · gentoo
dev-lang/R: remove 3.2.5 and 3.3.0 - Denis Dupeyron · gentoo
dev-lang/R: 593420 - Denis Dupeyron · gentoo
dev-lang/R: bump to 3.3.1 - Denis Dupeyron · gentoo
dev-lang/R: bump to 3.3.0, fix bug #567488 - Denis Dupeyron · gentoo
dev-lang/R: remove 3.2.3 and 3.2.4 - Denis Dupeyron · gentoo
dev-lang/R: bump to 3.2.5 - Denis Dupeyron · gentoo
dev-lang/R: bump to 3.2.4 - Denis Dupeyron · gentoo
dev-lang/R: bump to 3.2.3 - Justin Lecher · gentoo
dev-lang/R: Clean old
Package-Manager: portage-2.2.23 Signed-off-by: Justin Lecher <jlec@gentoo.org> - Agostino Sarubbo · gentoo
dev-lang/R: ppc stable wrt bug #556422
Package-Manager: portage-2.2.20.1 RepoMan-Options: --include-arches="ppc" - Mikle Kolyada · gentoo
dev-lang/R: sparc stable wrt bug #556422
Package-Manager: portage-2.2.20.1 - Jeroen Roovers · gentoo
dev-lang/R: Stable for HPPA PPC64 (bug #556422).
Package-Manager: portage-2.2.20.1 RepoMan-Options: --ignore-arches - Mikle Kolyada · gentoo
dev-lang/R: ia64 stable wrt bug #556422
Package-Manager: portage-2.2.20.1 - Agostino Sarubbo · gentoo
dev-lang/R: x86 stable wrt bug #556422
Package-Manager: portage-2.2.20.1 RepoMan-Options: --include-arches="x86" - Agostino Sarubbo · gentoo
dev-lang/R: amd64 stable wrt bug #556422
Package-Manager: portage-2.2.20.1 RepoMan-Options: --include-arches="amd64" - Justin Lecher · gentoo
Use https by default
Convert all URLs for sites supporting encrypted connections from http to https Signed-off-by: Justin Lecher <jlec@gentoo.org> - Denis Dupeyron · gentoo
dev-lang/R: bump to 3.2.2
Gentoo-Bug: 557600 Package-Manager: portage-2.2.20.1 - Robin H. Johnson · gentoo
proj/gentoo: Initial commit
This commit represents a new era for Gentoo: Storing the gentoo-x86 tree in Git, as converted from CVS. This commit is the start of the NEW history. Any historical data is intended to be grafted onto this point. Creation process: 1. Take final CVS checkout snapshot 2. Remove ALL ChangeLog* files 3. Transform all Manifests to thin 4. Remove empty Manifests 5. Convert all stale $Header$/$Id$ CVS keywords to non-expanded Git $Id$ 5.1. Do not touch files with -kb/-ko keyword flags. Signed-off-by: Robin H. Johnson <robbat2@gentoo.org> X-Thanks: Alec Warner <antarus@gentoo.org> - did the GSoC 2006 migration tests X-Thanks: Robin H. Johnson <robbat2@gentoo.org> - infra guy, herding this project X-Thanks: Nguyen Thai Ngoc Duy <pclouds@gentoo.org> - Former Gentoo developer, wrote Git features for the migration X-Thanks: Brian Harring <ferringb@gentoo.org> - wrote much python to improve cvs2svn X-Thanks: Rich Freeman <rich0@gentoo.org> - validation scripts X-Thanks: Patrick Lauer <patrick@gentoo.org> - Gentoo dev, running new 2014 work in migration X-Thanks: Michał Górny <mgorny@gentoo.org> - scripts, QA, nagging X-Thanks: All of other Gentoo developers - many ideas and lots of paint on the bikeshed