dev-perl / Bio-DB-HTS

Perl bindings for sci-libs/htslib

Official package sites : https://metacpan.org/release/Bio-DB-HTS ·

v2.11 :: 0 :: gentoo

Modified
License
Apache-2.0
Keywords
~amd64 ~x86
USE flags
test

General

test
Enable dependencies and/or preparations necessary to run tests (usually controlled by FEATURES=test but can be toggled independently)

dev-lang / perl : Larry Wall's Practical Extraction and Report Language

dev-perl / Module-Build : Build and install Perl modules

dev-perl / Test-LeakTrace : Traces memory leaks

sci-biology / bioperl : Perl tools for bioinformatics - Core modules

sci-libs / htslib : C library for high-throughput sequencing data formats

dev-lang / perl : Larry Wall's Practical Extraction and Report Language

sci-biology / bioperl : Perl tools for bioinformatics - Core modules

sci-libs / htslib : C library for high-throughput sequencing data formats

Marek Szuba · gentoo
dev-perl/Bio-DB-HTS: remove old
Package-Manager: Portage-2.3.24, Repoman-2.3.6
Marek Szuba · gentoo
dev-perl/Bio-DB-HTS: bump to 2.11
Package-Manager: Portage-2.3.24, Repoman-2.3.6
Marek Szuba · gentoo
dev-perl/Bio-DB-HTS: allow explicit specification of htslib directories
Upstream build script takes a single directory as htslib prefix, then appends "include/htslib" while looking for header files and "lib" while looking for library. Unsurprisingly, the latter fails to locate the htslib library on SYMLINK_LIB=no systems. I have patched the build script to allow both htslib-includedir and htslib-libdir to be provided explicitly, thus letting the ebuild take care of choosing the correct libdir name for the specified architecture/ABI. Closes: https://bugs.gentoo.org/654460 Package-Manager: Portage-2.3.24, Repoman-2.3.6
Marek Szuba · gentoo
dev-perl/Bio-DB-HTS: add missing dependency
Package-Manager: Portage-2.3.24, Repoman-2.3.6
Marek Szuba · gentoo
dev-perl/Bio-DB-HTS: new package
Perl bindings for sci-libs/htslib, used by e.g. Ensembl. Package-Manager: Portage-2.3.24, Repoman-2.3.6