dev-perl / Bio-DB-HTS

Perl bindings for sci-libs/htslib

Official package sites : https://metacpan.org/release/Bio-DB-HTS ·

v3.10.0-r2 :: 0 :: gentoo

Modified
License
Apache-2.0
Keywords
~amd64 ~x86
USE flags
test

v3.10.0-r1 :: 0 :: gentoo

Modified
License
Apache-2.0
Keywords
~amd64 ~x86
USE flags
test

General

test
Enable dependencies and/or preparations necessary to run tests (usually controlled by FEATURES=test but can be toggled independently)

perl_features

debug
PERL_FEATURES setting enabling internal debug support in Perl
ithreads
PERL_FEATURES setting enabling interpreter level threads, has some compatibility problems
quadmath
PERL_FEATURES setting enabling 128bit floating point arithmetic via libquadmath

dev-lang / perl : Larry Wall's Practical Extraction and Report Language

dev-perl / Module-Build : Build and install Perl modules

sci-libs / htslib : C library for high-throughput sequencing data formats

dev-lang / perl : Larry Wall's Practical Extraction and Report Language

sci-biology / bioperl : Perl tools for bioinformatics - Core modules

sci-libs / htslib : C library for high-throughput sequencing data formats

Repository mirror & CI · gentoo
Merge updates from master
Sam James · gentoo
dev-perl/Bio-DB-HTS: EAPI 8, rely on eclass impls
This covers more variables/args, etc. Signed-off-by: Sam James <sam@gentoo.org>
Repository mirror & CI · gentoo
Merge updates from master
David Seifert · gentoo
dev-perl/Bio-DB-HTS: Drop to unstable
Package-Manager: Portage-3.0.12, Repoman-3.0.2 Signed-off-by: David Seifert <soap@gentoo.org>
Repository mirror & CI · gentoo
Merge updates from master
Marek Szuba · gentoo
dev-perl/Bio-DB-HTS: remove old
Signed-off-by: Marek Szuba <marecki@gentoo.org>
Repository mirror & CI · gentoo
Merge updates from master
Sam James · gentoo
dev-perl/Bio-DB-HTS: Stabilize 3.10.0-r1 amd64, #738212
Signed-off-by: Sam James <sam@gentoo.org>
Repository mirror & CI · gentoo
Merge updates from master
Sam James · gentoo
dev-perl/Bio-DB-HTS: Stabilize 3.10.0-r1 x86, #738212
Signed-off-by: Sam James <sam@gentoo.org>
Repository mirror & CI · gentoo
Merge updates from master
Kent Fredric · gentoo
dev-perl/Bio-DB-HTS: -r1 bump for EAPI7 + toolchain love
- EAPI7 - Ensure not breaking when LD=!ccld - Ensure passing CFLAGS to make/compiler - Populate more remote-id's in metadata.xml Package-Manager: Portage-2.3.100, Repoman-2.3.22 Signed-off-by: Kent Fredric <kentnl@gentoo.org>
Repository mirror & CI · gentoo
Merge updates from master
Marek Szuba · gentoo
dev-perl/Bio-DB-HTS: respect LDFLAGS
Closes: https://bugs.gentoo.org/713816 Package-Manager: Portage-2.3.89, Repoman-2.3.20 Signed-off-by: Marek Szuba <marecki@gentoo.org>
Repository mirror & CI · gentoo
Merge updates from master
Agostino Sarubbo · gentoo
dev-perl/Bio-DB-HTS: x86 stable wrt bug #713240
Package-Manager: Portage-2.3.89, Repoman-2.3.20 RepoMan-Options: --include-arches="x86" Signed-off-by: Agostino Sarubbo <ago@gentoo.org>
Repository mirror & CI · gentoo
Merge updates from master
Agostino Sarubbo · gentoo
dev-perl/Bio-DB-HTS: amd64 stable wrt bug #713240
Package-Manager: Portage-2.3.89, Repoman-2.3.20 RepoMan-Options: --include-arches="amd64" Signed-off-by: Agostino Sarubbo <ago@gentoo.org>
Repository mirror & CI · gentoo
Merge updates from master
Andreas K. Hüttel · gentoo
dev-perl/Bio-DB-HTS: Normalize package versions
Package-Manager: Portage-2.3.78, Repoman-2.3.17 Signed-off-by: Andreas K. Hüttel <dilfridge@gentoo.org>
Repository mirror & CI · gentoo
Merge updates from master
Marek Szuba · gentoo
dev-perl/Bio-DB-HTS: add test restrictions
As recommended by pkgcheck. Package-Manager: Portage-2.3.76, Repoman-2.3.16 Signed-off-by: Marek Szuba <marecki@gentoo.org>
Repository mirror & CI · gentoo
Merge updates from master
Marek Szuba · gentoo
dev-perl/Bio-DB-HTS: bump to 3.01
Signed-off-by: Marek Szuba <marecki@gentoo.org> Package-Manager: Portage-2.3.66, Repoman-2.3.11
Marek Szuba · gentoo
dev-perl/Bio-DB-HTS: remove old
Package-Manager: Portage-2.3.24, Repoman-2.3.6
Marek Szuba · gentoo
dev-perl/Bio-DB-HTS: bump to 2.11
Package-Manager: Portage-2.3.24, Repoman-2.3.6
Marek Szuba · gentoo
dev-perl/Bio-DB-HTS: allow explicit specification of htslib directories
Upstream build script takes a single directory as htslib prefix, then appends "include/htslib" while looking for header files and "lib" while looking for library. Unsurprisingly, the latter fails to locate the htslib library on SYMLINK_LIB=no systems. I have patched the build script to allow both htslib-includedir and htslib-libdir to be provided explicitly, thus letting the ebuild take care of choosing the correct libdir name for the specified architecture/ABI. Closes: https://bugs.gentoo.org/654460 Package-Manager: Portage-2.3.24, Repoman-2.3.6
Marek Szuba · gentoo
dev-perl/Bio-DB-HTS: add missing dependency
Package-Manager: Portage-2.3.24, Repoman-2.3.6
Marek Szuba · gentoo
dev-perl/Bio-DB-HTS: new package
Perl bindings for sci-libs/htslib, used by e.g. Ensembl. Package-Manager: Portage-2.3.24, Repoman-2.3.6