dev-perl / Bio-SamTools

Read SAM/BAM database files

Official package sites : https://metacpan.org/release/Bio-SamTools ·

v1.430.0-r2 :: 0 :: gentoo

Modified
License
|| ( Apache-2.0 Artistic-2 GPL-1+ )
Keywords
~amd64 ~x86

dev-lang / perl : Larry Wall's Practical Extraction and Report Language

dev-perl / Module-Build : Build and install Perl modules

sci-biology / samtools : Utilities for analysing and manipulating the SAM/BAM alignment formats

dev-lang / perl : Larry Wall's Practical Extraction and Report Language

sci-biology / bioperl : Perl tools for bioinformatics - Core modules

sci-biology / samtools : Utilities for analysing and manipulating the SAM/BAM alignment formats

sci-biology / GBrowse : Generic Model Organism Database Project - The Generic Genome Browser

721220
dev-perl/Bio-SamTools questionable licensing
Repository mirror & CI · gentoo
Merge updates from master
Kent Fredric · gentoo
dev-perl/Bio-SamTools: Cleanup old 1.430.0-r1
Package-Manager: Portage-2.3.103, Repoman-2.3.22 Signed-off-by: Kent Fredric <kentnl@gentoo.org>
Repository mirror & CI · gentoo
Merge updates from master
Kent Fredric · gentoo
dev-perl/Bio-SamTools: -r bump for toolchain fixes
- Don't break when LD=!ccld - Ensure CFLAGS passed through to compiler Package-Manager: Portage-2.3.100, Repoman-2.3.22 Signed-off-by: Kent Fredric <kentnl@gentoo.org>
Repository mirror & CI · gentoo
Merge updates from master
Kent Fredric · gentoo
dev-perl/Bio-SamTools: Cleanup old 1.430.0
- Unstable(~) eclipsed by 1.430.0-r1 for ~1 month Closes: https://bugs.gentoo.org/661112 Package-Manager: Portage-2.3.100, Repoman-2.3.22 Signed-off-by: Kent Fredric <kentnl@gentoo.org>
Repository mirror & CI · gentoo
Merge updates from master
Kent Fredric · gentoo
dev-perl/Bio-SamTools: Add fixed version for bug #661112
- Reworked patches so the autodetection stuff is nixed, because its really silly and doesn't work. - Paths now computed in ebuild and passed explicitly - Fix handling of libdir for lib64 re bug #661112, but in a different way than proposed by Sławomir Nizio, mostly because I didn't see that suggestion until after I'd done all my changes (but also because relying on a hardcoded path in the code is also fragile) - Converted to EAPI7 - Removed unused empty variable assignments Bug: https://bugs.gentoo.org/661112 Package-Manager: Portage-2.3.99, Repoman-2.3.22 Signed-off-by: Kent Fredric <kentnl@gentoo.org>
Kent Fredric · gentoo
dev-perl/Bio-SamTools: Cleanup old
Package-Manager: Portage-2.3.24, Repoman-2.3.6
Kent Fredric · gentoo
dev-perl/Bio-SamTools: Bump to version 1.430.0
- Links against samtools:0.1-legacy series, as even though this code previously attempted to use 1.0+, closer inspection indicated incomplete linking, missing symbols, and failing tests introduced by this attempt. Additionally, upstream EXPLICITLY STATE the lack of current support for samtools 1.0 - Restores DIST_TEST as I can now test they work - Fold swathe of sed commands into patch Upstream: - Ship some test files requried for tests to pass Closes: https://bugs.gentoo.org/611970 Closes: https://bugs.gentoo.org/604950 Package-Manager: Portage-2.3.6, Repoman-2.3.2
Robin H. Johnson · gentoo
Drop $Id$ per council decision in bug #611234.
Signed-off-by: Robin H. Johnson <robbat2@gentoo.org>
T. Malfatti · gentoo
media-libs/portaudio: Version bump
Pacho Ramos · gentoo
dev-perl/Bio-SamTools: Set proper slot
Package-Manager: portage-2.3.2 RepoMan-Options: --force
Pacho Ramos · gentoo
dev-perl/Bio-SamTools: Drop old
Package-Manager: portage-2.3.2 RepoMan-Options: --force
Patrice Clement · gentoo
Merge remote-tracking branch 'github/pr/548'.
Andreas K. Hüttel · gentoo
dev-perl/Bio-SamTools: Version bump; remove old
Package-Manager: portage-2.2.26
Robin H. Johnson · gentoo
proj/gentoo: Initial commit
This commit represents a new era for Gentoo: Storing the gentoo-x86 tree in Git, as converted from CVS. This commit is the start of the NEW history. Any historical data is intended to be grafted onto this point. Creation process: 1. Take final CVS checkout snapshot 2. Remove ALL ChangeLog* files 3. Transform all Manifests to thin 4. Remove empty Manifests 5. Convert all stale $Header$/$Id$ CVS keywords to non-expanded Git $Id$ 5.1. Do not touch files with -kb/-ko keyword flags. Signed-off-by: Robin H. Johnson <robbat2@gentoo.org> X-Thanks: Alec Warner <antarus@gentoo.org> - did the GSoC 2006 migration tests X-Thanks: Robin H. Johnson <robbat2@gentoo.org> - infra guy, herding this project X-Thanks: Nguyen Thai Ngoc Duy <pclouds@gentoo.org> - Former Gentoo developer, wrote Git features for the migration X-Thanks: Brian Harring <ferringb@gentoo.org> - wrote much python to improve cvs2svn X-Thanks: Rich Freeman <rich0@gentoo.org> - validation scripts X-Thanks: Patrick Lauer <patrick@gentoo.org> - Gentoo dev, running new 2014 work in migration X-Thanks: Michał Górny <mgorny@gentoo.org> - scripts, QA, nagging X-Thanks: All of other Gentoo developers - many ideas and lots of paint on the bikeshed