Summary
HDF5 for Python (h5py) is a general-purpose simple Python interface to the Hierarchical Data Format library, version 5. Existing Python and Numpy concepts are used for the interface. Almost all HDF5 features are available from Python, including things like compound datatypes (as used with Numpy recarray types), HDF5 attributes, hyperslab and point-based I/O, and more recent features in HDF 1.8 like resizable datasets and recursive iteration over entire files.
Versions
v3.8.0 :: 0 :: gentoo
- Modified
- License
- BSD
- Keywords
- amd64 x86 ~amd64-linux ~arm ~riscv ~x86-linux
- USE flags
- doc examples test
USE flags
General
- doc
- Add extra documentation (API, Javadoc, etc). It is recommended to enable per package instead of globally
- examples
- Install examples, usually source code
- test
- Enable dependencies and/or preparations necessary to run tests (usually controlled by FEATURES=test but can be toggled independently)
python_targets
- python3_10
- Build with Python 3.10
- python3_11
- Build with Python 3.11
- python3_9
- Build with Python 3.9
Dependencies
sci-libs / hdf5 : General purpose library and file format for storing scientific data
Runtime Dependencies
dev-lang / python : An interpreted, interactive, object-oriented programming language
dev-python / numpy : Fast array and numerical python library
sci-libs / hdf5 : General purpose library and file format for storing scientific data
Depending packages
dev-python / emcee : Python ensemble sampling toolkit for affine-invariant MCMC
dev-python / meshio : Input/output for many mesh formats
sci-libs / cantera : Object-oriented tool suite for chemical kinetics, thermodynamics, and transport
sci-libs / keras : Deep Learning for humans
sci-libs / tensorflow : Computation framework using data flow graphs for scalable machine learning
sci-visualization / veusz : Qt scientific plotting package with good Postscript output
Bugs
- 875623
- dev-python/h5py-3.7.0 fails tests: OSError: Unable to create file (page buffering is disabled for parallel)
- 890300
- dev-python/h5py-3.7.0 fails to compile (USR-MERGE-SYSTEM): TypeError: not all arguments converted during string formatting
- 898672
- dev-python/h5py-3.8.0 fails to compile (CYTHON3-SYSTEM): Cython.Compiler.Errors.CompileError: _errors.pyx
Change logs
- Repository mirror & CI · gentoo
Merge updates from master - Michał Górny · gentoo
dev-python/h5py: Use pypi.eclass
Signed-off-by: Michał Górny <mgorny@gentoo.org> - Michał Górny · gentoo
dev-python/h5py: Remove old
Signed-off-by: Michał Górny <mgorny@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - Arthur Zamarin · gentoo
dev-python/h5py: Stabilize 3.8.0 x86, #896080
Signed-off-by: Arthur Zamarin <arthurzam@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - Arthur Zamarin · gentoo
dev-python/h5py: Stabilize 3.8.0 amd64, #896080
Signed-off-by: Arthur Zamarin <arthurzam@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - Michał Górny · gentoo
dev-python/h5py: Bump to 3.8.0
Signed-off-by: Michał Górny <mgorny@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - David Seifert · gentoo
*/*: remove py3.8 from PYTHON_COMPAT
Signed-off-by: David Seifert <soap@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - Michał Górny · gentoo
dev-python/h5py: Backport -Wincompatible-function-pointer-types fix
Closes: https://bugs.gentoo.org/883813 Signed-off-by: Michał Górny <mgorny@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - Sam James · gentoo
dev-python/h5py: Keyword 3.7.0 arm, #858215
Signed-off-by: Sam James <sam@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - Andrew Ammerlaan · gentoo
dev-python/h5py: enable py3.11
Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - Jakov Smolić · gentoo
dev-python/h5py: keyword 3.7.0 for ~riscv
Signed-off-by: Jakov Smolić <jsmolic@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - Michał Górny · gentoo
dev-python/h5py: Remove old
Signed-off-by: Michał Górny <mgorny@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - Sam James · gentoo
dev-python/h5py: Stabilize 3.7.0 x86, #853988
Signed-off-by: Sam James <sam@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - Jakov Smolić · gentoo
dev-python/h5py: Stabilize 3.7.0 amd64, #853988
Signed-off-by: Jakov Smolić <jsmolic@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - Michał Górny · gentoo
dev-python/h5py: Remove old
Signed-off-by: Michał Górny <mgorny@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - Sam James · gentoo
dev-python/h5py: Stabilize 3.6.0 x86, #847682
Signed-off-by: Sam James <sam@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - Jakov Smolić · gentoo
dev-python/h5py: Stabilize 3.6.0 amd64, #847682
Signed-off-by: Jakov Smolić <jsmolic@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - Michał Górny · gentoo
dev-python/h5py: Bump to 3.7.0
Signed-off-by: Michał Górny <mgorny@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - Michał Górny · gentoo
dev-python/h5py: Bump to 3.6.0
Signed-off-by: Michał Górny <mgorny@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - Michał Górny · gentoo
dev-python/h5py: Remove flag-o-matic inherit
Signed-off-by: Michał Górny <mgorny@gentoo.org> - Michał Górny · gentoo
dev-python/h5py: Remove obsolete dep on cached-property
Signed-off-by: Michał Górny <mgorny@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - Michał Górny · gentoo
dev-python/h5py: Remove old
Signed-off-by: Michał Górny <mgorny@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - Sam James · gentoo
dev-python/h5py: Stabilize 3.3.0 x86, #803716
Signed-off-by: Sam James <sam@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - Sam James · gentoo
dev-python/h5py: Stabilize 3.3.0 amd64, #803716
Signed-off-by: Sam James <sam@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - Michał Górny · gentoo
dev-python/h5py: Bump to 3.3.0
Signed-off-by: Michał Górny <mgorny@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - Marek Szuba · gentoo
dev-python/h5py: support python3_10
Builds, tests and installs fine. Signed-off-by: Marek Szuba <marecki@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - Sam James · gentoo
dev-python/h5py: Stabilize 3.2.1 x86, #781776
Signed-off-by: Sam James <sam@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - Michał Górny · gentoo
dev-python/h5py: Fix skipping inconvenient types on x86
Closes: https://bugs.gentoo.org/782238 Signed-off-by: Michał Górny <mgorny@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - Sam James · gentoo
dev-python/h5py: Stabilize 3.2.1 amd64, #781776
Signed-off-by: Sam James <sam@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - Michał Górny · gentoo
dev-python/h5py: Disable setup_requires the easy way
Thanks to Thomas Kluyver for the suggestion. Signed-off-by: Michał Górny <mgorny@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - Michał Górny · gentoo
dev-python/h5py: Bump to 3.2.1
Signed-off-by: Michał Górny <mgorny@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - Michał Górny · gentoo
*/*: Remove obsolete values from PYTHON_COMPAT
Signed-off-by: Michał Górny <mgorny@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - David Seifert · gentoo
dev-python/h5py: Add python 3.9
* Add 'sci-libs/hdf5' to DEPEND Closes: https://bugs.gentoo.org/729368 Package-Manager: Portage-3.0.3, Repoman-3.0.0 Signed-off-by: David Seifert <soap@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - Michał Górny · gentoo
dev-python/h5py: Remove redundant versions
Signed-off-by: Michał Górny <mgorny@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - Michał Górny · gentoo
dev-python/h5py: Restore PYTHON_USEDEP on pkgconfig
Closes: https://bugs.gentoo.org/725114 Signed-off-by: Michał Górny <mgorny@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - Agostino Sarubbo · gentoo
dev-python/h5py: x86 stable wrt bug #720518
Package-Manager: Portage-2.3.99, Repoman-2.3.22 RepoMan-Options: --include-arches="x86" Signed-off-by: Agostino Sarubbo <ago@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - Agostino Sarubbo · gentoo
dev-python/h5py: amd64 stable wrt bug #720518
Package-Manager: Portage-2.3.99, Repoman-2.3.22 RepoMan-Options: --include-arches="amd64" Signed-off-by: Agostino Sarubbo <ago@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - Michał Górny · gentoo
dev-python/h5py: Remove redundant versions
Signed-off-by: Michał Górny <mgorny@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - Agostino Sarubbo · gentoo
dev-python/h5py: x86 stable wrt bug #714332
Package-Manager: Portage-2.3.89, Repoman-2.3.20 RepoMan-Options: --include-arches="x86" Signed-off-by: Agostino Sarubbo <ago@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - Agostino Sarubbo · gentoo
dev-python/h5py: amd64 stable wrt bug #714332
Package-Manager: Portage-2.3.89, Repoman-2.3.20 RepoMan-Options: --include-arches="amd64" Signed-off-by: Agostino Sarubbo <ago@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - Andrey Grozin · gentoo
dev-python/h5py: add python3_8
Package-Manager: Portage-2.3.94, Repoman-2.3.21 Signed-off-by: Andrey Grozin <grozin@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - Michał Górny · gentoo
dev-python/h5py: Remove py2
Signed-off-by: Michał Górny <mgorny@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - Andrew Ammerlaan · gentoo
dev-python/h5py: Add py3_7 to 2.9.0
Bug: https://github.com/gentoo/gentoo/pull/14343 Package-Manager: Portage-2.3.84, Repoman-2.3.20 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@riseup.net> Signed-off-by: Benda Xu <heroxbd@gentoo.org> - Andrew Ammerlaan · gentoo
dev-python/h5py: Version bump 2.10.0
Closes: https://github.com/gentoo/gentoo/pull/14343 Package-Manager: Portage-2.3.84, Repoman-2.3.20 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@riseup.net> Signed-off-by: Benda Xu <heroxbd@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - Michał Górny · gentoo
*/*: Clean PYTHON_COMPAT of obsolete impls
Closes: https://github.com/gentoo/gentoo/pull/14246 Signed-off-by: Michał Górny <mgorny@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - Michał Górny · gentoo
*/*: [QA] Fix trivial cases of MissingTestRestrict
The result was achieved via the following pipeline: pkgcheck scan -c RestrictTestCheck -R FormatReporter \ --format '{category}/{package}/{package}-{version}.ebuild' | xargs -n32 grep -L RESTRICT | xargs -n32 sed -i -e '/^IUSE=.*test/aRESTRICT="!test? ( test )"' The resulting metadata was compared before and after the change. Few Go ebuilds had to be fixed manually due to implicit RESTRICT=strip added by the eclass. Two ebuilds have to be fixed because of multiline IUSE. Suggested-by: Robin H. Johnson <robbat2@gentoo.org> Closes: https://github.com/gentoo/gentoo/pull/13942 Signed-off-by: Michał Górny <mgorny@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - Michał Górny · gentoo
*/*: Remove python3_4 PYTHON_COMPAT correctly
Signed-off-by: Michał Górny <mgorny@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - Benda Xu · gentoo
dev-python/h5py: bump to 2.9.0.
Suggested-By: Erik Quaeghebeur, Peter Große Closes: https://bugs.gentoo.org/672148 Package-Manager: Portage-2.3.52, Repoman-2.3.12 Signed-off-by: Benda Xu <heroxbd@gentoo.org> - Nicolas Bock · gentoo
dev-python/h5py: Version bump to 2.7.1
Closes: https://bugs.gentoo.org/649036 Package-Manager: Portage-2.3.19, Repoman-2.3.6 - Michał Górny · gentoo
dev-python/h5py: Clean old up - Patrice Clement · gentoo
dev-python/h5py: install examples via DOCS array.
Gentoo-Bug: https://bugs.gentoo.org/622788 Package-Manager: Portage-2.3.6, Repoman-2.3.1 - Sébastien Fabbro · gentoo
dev-python/h5py: uncompress examples
Package-Manager: Portage-2.3.6, Repoman-2.3.2 - Sébastien Fabbro · gentoo
dev-python/h5py: examples installation for eapi6
Package-Manager: Portage-2.3.6, Repoman-2.3.2 - Sébastien Fabbro · gentoo
dev-python/h5py: added python-3.6
Package-Manager: Portage-2.3.6, Repoman-2.3.2 - Agostino Sarubbo · gentoo
dev-python/h5py: x86 stable wrt bug #605288
Package-Manager: Portage-2.3.5, Repoman-2.3.1 RepoMan-Options: --include-arches="x86" Signed-off-by: Agostino Sarubbo <ago@gentoo.org> - Agostino Sarubbo · gentoo
dev-python/h5py: amd64 stable wrt bug #605288
Package-Manager: Portage-2.3.5, Repoman-2.3.1 RepoMan-Options: --include-arches="amd64" Signed-off-by: Agostino Sarubbo <ago@gentoo.org> - Michał Górny · gentoo
dev-python/h5py: Clean old versions up - Benda Xu · gentoo
dev-python/h5py: version bump.
Package-Manager: Portage-2.3.3, Repoman-2.3.1 - Robin H. Johnson · gentoo
Drop $Id$ per council decision in bug #611234.
Signed-off-by: Robin H. Johnson <robbat2@gentoo.org> - T. Malfatti · gentoo
media-libs/portaudio: Version bump - Marius Brehler · gentoo
dev-python/h5py: Fix dependecy on hdf5[hl] (PR #3061).
Package-Manager: portage-2.3.0 Signed-off-by: Benda Xu <heroxbd@gentoo.org> - Michał Górny · gentoo
global: Drop dead implementations from PYTHON_COMPAT - Mike Gilbert · gentoo
dev-python/h5py: drop rm -r _build || die
Bug: https://bugs.gentoo.org/591736 Package-Manager: portage-2.3.0_p24 - Benda Xu · gentoo
dev-python/h5py: version bump.
Package-Manager: portage-2.3.0 - Justin Lecher · gentoo
dev-python/h5py: Backport support for mpi4py-2
Gentoo-Bug: https://bugs.gentoo.org/show_bug.cgi?id=563890 Package-Manager: portage-2.2.23 Signed-off-by: Justin Lecher <jlec@gentoo.org> - Justin Lecher · gentoo
dev-python/h5py: Add python3.5 support
Package-Manager: portage-2.2.23 Signed-off-by: Justin Lecher <jlec@gentoo.org> - Robin H. Johnson · gentoo
proj/gentoo: Initial commit
This commit represents a new era for Gentoo: Storing the gentoo-x86 tree in Git, as converted from CVS. This commit is the start of the NEW history. Any historical data is intended to be grafted onto this point. Creation process: 1. Take final CVS checkout snapshot 2. Remove ALL ChangeLog* files 3. Transform all Manifests to thin 4. Remove empty Manifests 5. Convert all stale $Header$/$Id$ CVS keywords to non-expanded Git $Id$ 5.1. Do not touch files with -kb/-ko keyword flags. Signed-off-by: Robin H. Johnson <robbat2@gentoo.org> X-Thanks: Alec Warner <antarus@gentoo.org> - did the GSoC 2006 migration tests X-Thanks: Robin H. Johnson <robbat2@gentoo.org> - infra guy, herding this project X-Thanks: Nguyen Thai Ngoc Duy <pclouds@gentoo.org> - Former Gentoo developer, wrote Git features for the migration X-Thanks: Brian Harring <ferringb@gentoo.org> - wrote much python to improve cvs2svn X-Thanks: Rich Freeman <rich0@gentoo.org> - validation scripts X-Thanks: Patrick Lauer <patrick@gentoo.org> - Gentoo dev, running new 2014 work in migration X-Thanks: Michał Górny <mgorny@gentoo.org> - scripts, QA, nagging X-Thanks: All of other Gentoo developers - many ideas and lots of paint on the bikeshed