dev-python / scipy

Scientific algorithms library for Python

Official package sites : https://github.com/scipy/scipy/ · https://pypi.org/project/scipy/ · https://scipy.org/ ·

SciPy is an open source library of scientific tools for Python. SciPy supplements the popular numpy module, gathering a variety of high level science and engineering modules together as a single package. SciPy includes modules for graphics and plotting, optimization, integration, special functions, signal and image processing, genetic algorithms, ODE solvers, and others.

v1.8.0 :: 0 :: gentoo

Modified
License
BSD LGPL-2
Keywords
-hppa amd64 arm arm64 ppc ppc64 x86 ~ia64 ~riscv ~s390 ~sparc
USE flags
doc pythran sparse test

General

doc
Add extra documentation (API, Javadoc, etc). It is recommended to enable per package instead of globally
pythran
Use dev-python/pythran to accelerate runtime
sparse
Adds support for sparse solving with sci-libs/umfpack
test
Enable dependencies and/or preparations necessary to run tests (usually controlled by FEATURES=test but can be toggled independently)

python_targets

python3_10
Build with Python 3.10
python3_8
Build with Python 3.8
python3_9
Build with Python 3.9

dev-python / numpy : Fast array and numerical python library

sci-libs / arpack : Arnoldi package library to solve large scale eigenvalue problems

sci-libs / umfpack : Unsymmetric multifrontal sparse LU factorization library

virtual / cblas : Virtual for BLAS C implementation

virtual / fortran : Virtual for Fortran Compiler

virtual / lapack : Virtual for Linear Algebra Package FORTRAN 77 (LAPACK) implementation

dev-lang / python : An interpreted, interactive, object-oriented programming language

dev-python / numpy : Fast array and numerical python library

dev-python / pillow : Python Imaging Library (fork)

sci-libs / arpack : Arnoldi package library to solve large scale eigenvalue problems

sci-libs / umfpack : Unsymmetric multifrontal sparse LU factorization library

virtual / cblas : Virtual for BLAS C implementation

virtual / fortran : Virtual for Fortran Compiler

virtual / lapack : Virtual for Linear Algebra Package FORTRAN 77 (LAPACK) implementation

dev-python / GridDataFormats : Reading and writing of data on regular grids in Python

dev-python / aesara : Library for operating on mathematical expressions with multi-dimensional arrays

dev-python / graph-tool : An efficient python module for manipulation and statistical analysis of graphs

dev-python / lmfit : Non-Linear Least-Squares Minimization and Curve-Fitting for Python

dev-python / oct2py : Python to GNU Octave bridge

dev-python / pandas : Powerful data structures for data analysis and statistics

dev-python / patsy : Python module to describe statistical models and design matrices

dev-python / pslab-python : Python library for communicating with Pocket Science Lab

dev-python / pweave : Scientific report generator and literate programming tool

dev-python / pyamg : Algebraic multigrid solvers in Python

dev-python / pyqtgraph : A pure-python graphics and GUI library built on PyQt and numpy

dev-python / seaborn : Statistical data visualization

dev-python / statsmodels : Statistical computations and models for use with SciPy

dev-python / trimesh : Python library for loading and using triangular meshes

dev-python / uranium : A Python framework for building 3D printing related applications

dev-ros / calibration_estimation : Runs an optimization to estimate the a robot's kinematic parameters

net-wireless / gnuradio : Toolkit that provides signal processing blocks to implement software radios

net-wireless / nanovna-saver : tool for reading, displaying and saving data from the NanoVNA

sci-biology / biopandas : Molecular Structures in Pandas DataFrames

sci-chemistry / MDAnalysis : A python library to analyze and manipulate molecular dynamics trajectories

sci-chemistry / chemex : Program to fit chemical exchange induced shift and relaxation data

sci-chemistry / mdtraj : Read, write and analyze MD trajectories with only a few lines of Python code

sci-chemistry / nmrglue : A module for working with NMR data in Python

sci-libs / cantera : Object-oriented tool suite for chemical kinetics, thermodynamics, and transport

sci-libs / cartopy : Python package for geospatial data processing and analysis

sci-libs / keras-preprocessing : Easy data preprocessing and data augmentation for deep learning models

sci-libs / numkit : Numerical first aid kit (with numpy/scipy)

sci-libs / pastix : Parallel solver for very large sparse linear systems

sci-libs / rocFFT : Next generation FFT implementation for ROCm

sci-libs / scikit-image : Image processing routines for SciPy

sci-libs / scikit-learn : Machine learning library for Python

sci-libs / scikit-optimize : Sequential model-based optimization library

sci-physics / qmeq : Quantum master equation package for Quantum dot transport calculations

sci-visualization / pythonprop : Scripts to prepare and plot VOACAP propagation predictions

sci-visualization / tensorboard : TensorFlow's Visualization Toolkit

sys-cluster / ceph : Ceph distributed filesystem

743295
dev-python/scipy fails test test_bisplev_integer_overflow Fatal Python error: Segmentation fault
750320
dev-python/scipy-1.8.0 fails to compile: source.c:(.text.startup+0x8c): undefined reference to `cblas_ddot'
788652
dev-python/scipy-1.6.2: fails 1 test on ppc64 (TestNoData.test_nodata)
814950
dev-python/scipy-1.8.0 does not respect LDFLAGS
814953
dev-python/scipy-1.8.0 installs pre-stripped files
836693
dev-python/scipy-1.8.0 - FAILED scipy/io/arff/tests/test_arffread.py::TestNoData::test_nodata - AssertionError
Repository mirror & CI · gentoo
Merge updates from master
Michał Górny · gentoo
dev-python/scipy: Update HOMEPAGE
Signed-off-by: Michał Górny <mgorny@gentoo.org>
Michał Górny · gentoo
dev-python/scipy: Remove old
Signed-off-by: Michał Górny <mgorny@gentoo.org>
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Agostino Sarubbo · gentoo
dev-python/scipy: x86 stable wrt bug #835550
Package-Manager: Portage-3.0.30, Repoman-3.0.3 RepoMan-Options: --include-arches="x86" Signed-off-by: Agostino Sarubbo <ago@gentoo.org>
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Agostino Sarubbo · gentoo
dev-python/scipy: ppc stable wrt bug #835550
Package-Manager: Portage-3.0.30, Repoman-3.0.3 RepoMan-Options: --include-arches="ppc" Signed-off-by: Agostino Sarubbo <ago@gentoo.org>
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Jakov Smolić · gentoo
dev-python/scipy: Stabilize 1.8.0 arm, #835550
Signed-off-by: Jakov Smolić <jsmolic@gentoo.org>
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Arthur Zamarin · gentoo
dev-python/scipy: Stabilize 1.8.0 ppc64, #835550
Signed-off-by: Arthur Zamarin <arthurzam@gentoo.org>
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Jakov Smolić · gentoo
dev-python/scipy: Stabilize 1.8.0 arm64, #835550
Signed-off-by: Jakov Smolić <jsmolic@gentoo.org>
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Agostino Sarubbo · gentoo
dev-python/scipy: amd64 stable wrt bug #835550
Package-Manager: Portage-3.0.30, Repoman-3.0.3 RepoMan-Options: --include-arches="amd64" Signed-off-by: Agostino Sarubbo <ago@gentoo.org>
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Michał Górny · gentoo
dev-python/scipy: Remove old
Signed-off-by: Michał Górny <mgorny@gentoo.org>
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Arthur Zamarin · gentoo
dev-python/scipy: Stabilize 1.7.3 ppc, #829530
Signed-off-by: Arthur Zamarin <arthurzam@gentoo.org>
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Arthur Zamarin · gentoo
dev-python/scipy: Stabilize 1.7.3 ppc64, #829530
Signed-off-by: Arthur Zamarin <arthurzam@gentoo.org>
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Jakov Smolić · gentoo
dev-python/scipy: Fix src_prepare phase on x86
scipy/sparse/linalg/isolve/tests/test_iterative.py was removed in between recent version changes which caused the prepare phase to fail on x86. Closes: https://bugs.gentoo.org/833291 Signed-off-by: Jakov Smolić <jsmolic@gentoo.org>
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Michał Górny · gentoo
dev-python/scipy: Bump to 1.8.0
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Arthur Zamarin · gentoo
dev-python/scipy: Stabilize 1.7.3 arm, #829530
Signed-off-by: Arthur Zamarin <arthurzam@gentoo.org>
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Michał Górny · gentoo
dev-python/scipy: Remove old
Signed-off-by: Michał Górny <mgorny@gentoo.org>
Sam James · gentoo
dev-python/scipy: Stabilize 1.7.1-r1 ppc64, #821817
Signed-off-by: Sam James <sam@gentoo.org>
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Agostino Sarubbo · gentoo
dev-python/scipy: x86 stable wrt bug #829530
Package-Manager: Portage-3.0.28, Repoman-3.0.3 RepoMan-Options: --include-arches="x86" Signed-off-by: Agostino Sarubbo <ago@gentoo.org>
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Agostino Sarubbo · gentoo
dev-python/scipy: amd64 stable wrt bug #829530
Package-Manager: Portage-3.0.28, Repoman-3.0.3 RepoMan-Options: --include-arches="amd64" Signed-off-by: Agostino Sarubbo <ago@gentoo.org>
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Sam James · gentoo
dev-python/scipy: Keyword 1.7.3 ppc, #814851
Signed-off-by: Sam James <sam@gentoo.org>
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Arthur Zamarin · gentoo
dev-python/scipy: Stabilize 1.7.3 arm64, #829530
Signed-off-by: Arthur Zamarin <arthurzam@gentoo.org>
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Sam James · gentoo
dev-python/scipy: backport ~ppc64 to 1.7.1-r1
Bug: https://bugs.gentoo.org/821817 Signed-off-by: Sam James <sam@gentoo.org>
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Arthur Zamarin · gentoo
dev-python/scipy: Keyword 1.7.3 ppc64, #814851
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Sam James · gentoo
dev-python/scipy: use pytest (again)
- Fixes tests with Python 3.10 (avoids a DeprecationWarning in distutils) - Try to use pytest-xdist again to speed things up. Seems to work now and be a bit faster (although it wasn't clear it was faster in the past for others). Signed-off-by: Sam James <sam@gentoo.org>
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Sam James · gentoo
dev-python/scipy: add 1.7.3
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Sam James · gentoo
dev-python/scipy: Stabilize 1.6.3 x86, #813567
Signed-off-by: Sam James <sam@gentoo.org>
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Sam James · gentoo
dev-python/scipy: Stabilize 1.7.1-r1 arm, #821817
Signed-off-by: Sam James <sam@gentoo.org>
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Sam James · gentoo
dev-python/scipy: Stabilize 1.6.3 ppc64, #813567
Signed-off-by: Sam James <sam@gentoo.org>
Sam James · gentoo
dev-python/scipy: Stabilize 1.6.3 ppc, #813567
Signed-off-by: Sam James <sam@gentoo.org>
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Sam James · gentoo
dev-python/scipy: keyword 1.7.2 for -hppa
Signed-off-by: Sam James <sam@gentoo.org>
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Sam James · gentoo
dev-python/scipy: mark as -hppa
This reverts commit e8f2dcda97e4dc66512a41dd6baaaf41a2b46e05. Can't be built: ``` /var/tmp/portage/dev-python/scipy-1.7.2/work/scipy-1.7.2-python3_9/scipy/stats/_boost/include/func_defs.hpp:96:33: required from ‘RealType boost_isf(RealType, const Args ...) [with Dst = boost::math::beta_distribution; RealType = long double; Args = {long double, long double}]’ scipy/stats/_boost/src/beta_ufunc.cxx:3902:46: required from here /var/tmp/portage/dev-python/scipy-1.7.2/work/scipy-1.7.2-python3_9/scipy/_lib/boost/boost/math/tools/promotion.hpp:148:37: error: static assertion failed: Sorry, but this platform does not have sufficient long double support for the special functions to be reliably implemented. 148 | BOOST_STATIC_ASSERT_MSG((0 == ::boost::is_same<type, long double>::value), "Sorry, but this platform does not have sufficient long double support for the special functions to be reliably implemented."); | ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ``` Bug: https://bugs.gentoo.org/804115 Signed-off-by: Sam James <sam@gentoo.org>
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Sam James · gentoo
dev-python/scipy: Keyword 1.7.2 hppa, #804115
Signed-off-by: Sam James <sam@gentoo.org>
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Jakov Smolić · gentoo
dev-python/scipy: Skip broken test_fitpack on 1.6.3 as well
Bug: https://bugs.gentoo.org/743295 Signed-off-by: Jakov Smolić <jsmolic@gentoo.org>
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Sam James · gentoo
dev-python/scipy: add 1.7.2
Signed-off-by: Sam James <sam@gentoo.org>
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Sam James · gentoo
dev-python/scipy: Keyword 1.7.1-r1 sparc, #804115
Signed-off-by: Sam James <sam@gentoo.org>
Sam James · gentoo
dev-python/scipy: Stabilize 1.7.1-r1 arm64, #821817
Signed-off-by: Sam James <sam@gentoo.org>
Sam James · gentoo
dev-python/scipy: Keyword 1.7.1-r1 ia64, #804115
Signed-off-by: Sam James <sam@gentoo.org>
Sam James · gentoo
dev-python/scipy: Keyword 1.7.1-r1 s390, #804115
Signed-off-by: Sam James <sam@gentoo.org>
Sam James · gentoo
dev-python/scipy: Keyword 1.7.1-r1 arm, #814851
Signed-off-by: Sam James <sam@gentoo.org>
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Sam James · gentoo
dev-python/scipy: Stabilize 1.7.1-r1 amd64, #821817
Signed-off-by: Sam James <sam@gentoo.org>
Sam James · gentoo
dev-python/scipy: Stabilize 1.7.1-r1 x86, #821817
Signed-off-by: Sam James <sam@gentoo.org>
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Sam James · gentoo
dev-python/scipy: enable pythran by default
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Sam James · gentoo
dev-python/scipy: fix DoubleEmptyLine
Signed-off-by: Sam James <sam@gentoo.org>
Sam James · gentoo
dev-python/scipy: skip known-failing 32-bit tests
There's some more work in 1.7.2 (coming soon) which should help a bit. Signed-off-by: Sam James <sam@gentoo.org>
Sam James · gentoo
dev-python/scipy: add upstream fix for 32-bit test failures (pythran)
Signed-off-by: Sam James <sam@gentoo.org>
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Sam James · gentoo
dev-python/scipy: make pythran optional
Bug: https://bugs.gentoo.org/804115 Signed-off-by: Sam James <sam@gentoo.org>
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Sam James · gentoo
dev-python/scipy: skip known-failing longstanding test failure
Known broken upstream for years (ditto in Gentoo). Other tests seem okay and we're going to have to hope that's sufficient until there's a resolution upstream. Other distros are trying to battle this too. Bug: https://bugs.gentoo.org/743295 Bug: https://github.com/scipy/scipy/issues/9245 Bug: https://github.com/scipy/scipy/issues/12401 Bug: https://github.com/scipy/scipy/issues/12471 Signed-off-by: Sam James <sam@gentoo.org>
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Sam James · gentoo
dev-python/scipy: Stabilize 1.6.3 arm64, #813567
Signed-off-by: Sam James <sam@gentoo.org>
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Sam James · gentoo
dev-python/scipy: Keyword 1.7.1 arm64, #814851
Signed-off-by: Sam James <sam@gentoo.org>
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Marek Szuba · gentoo
dev-python/scipy: keyword 1.7.1 for ~riscv
Signed-off-by: Marek Szuba <marecki@gentoo.org>
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Sam James · gentoo
dev-python/scipy: raise lower bound on cython
Closes: https://bugs.gentoo.org/747955 Signed-off-by: Sam James <sam@gentoo.org>
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Sam James · gentoo
dev-python/scipy: Stabilize 1.6.3 arm, #813567
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Michał Górny · gentoo
dev-python/scipy: Bump to 1.7.1
Signed-off-by: Michał Górny <mgorny@gentoo.org>
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Michał Górny · gentoo
dev-python/scipy: Remove unused multiprocessing inherit
Signed-off-by: Michał Górny <mgorny@gentoo.org>
Michał Górny · gentoo
dev-python/scipy: Skip tests broken by new lapack
Signed-off-by: Michał Górny <mgorny@gentoo.org>
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Rolf Eike Beer · gentoo
dev-python/scipy: keyworded 1.6.3 for sparc, bug #804115
Package-Manager: Portage-3.0.20, Repoman-3.0.2 RepoMan-Options: --include-arches="sparc" Signed-off-by: Rolf Eike Beer <eike@sf-mail.de> Signed-off-by: Sam James <sam@gentoo.org>
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Marek Szuba · gentoo
dev-python/scipy: keyword 1.6.3 for ~riscv
Builds and installs fine, tests fail exactly the same way as on an up-to-date ~amd64 system (8 out of 16 mismatched elements in TestSchur.test_sort, 1 out of 4 mismatched elements in test_solve_discrete_are). Signed-off-by: Marek Szuba <marecki@gentoo.org>
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Michał Górny · gentoo
dev-python/scipy: Enable py3.10
Signed-off-by: Michał Górny <mgorny@gentoo.org>
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Agostino Sarubbo · gentoo
dev-python/scipy: amd64 stable wrt bug #794406
Package-Manager: Portage-3.0.13, Repoman-3.0.2 RepoMan-Options: --include-arches="amd64" Signed-off-by: Agostino Sarubbo <ago@gentoo.org>
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Michał Górny · gentoo
dev-python/scipy: Remove old
Signed-off-by: Michał Górny <mgorny@gentoo.org>
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Sam James · gentoo
dev-python/scipy: Stabilize 1.6.2 x86, #788544
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Sam James · gentoo
dev-python/scipy: Stabilize 1.6.2 amd64, #788544
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Sam James · gentoo
dev-python/scipy: Stabilize 1.6.2 ppc64, #788544
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Michał Górny · gentoo
dev-python/scipy: Bump to 1.6.3
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Michał Górny · gentoo
dev-python/scipy: Bump to 1.6.2
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Sam James · gentoo
dev-python/scipy: Stabilize 1.6.1 ppc64, #778140
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Agostino Sarubbo · gentoo
dev-python/scipy: amd64 stable wrt bug #778140
Package-Manager: Portage-3.0.13, Repoman-3.0.2 RepoMan-Options: --include-arches="amd64" Signed-off-by: Agostino Sarubbo <ago@gentoo.org>
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Agostino Sarubbo · gentoo
dev-python/scipy: amd64 stable wrt bug #771471
Package-Manager: Portage-3.0.13, Repoman-3.0.2 RepoMan-Options: --include-arches="amd64" Signed-off-by: Agostino Sarubbo <ago@gentoo.org>
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Sam James · gentoo
dev-python/scipy: Stabilize 1.6.0 ppc64, #771471
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Michał Górny · gentoo
dev-python/scipy: Bump to 1.6.1
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Michał Górny · gentoo
*/*: Remove obsolete values from PYTHON_COMPAT
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Agostino Sarubbo · gentoo
dev-python/scipy: amd64 stable wrt bug #756619
Package-Manager: Portage-3.0.9, Repoman-3.0.2 RepoMan-Options: --include-arches="amd64" Signed-off-by: Agostino Sarubbo <ago@gentoo.org>
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Fabian Groffen · gentoo
dev-python/scipy: drop x86-macos
Package-Manager: Portage-3.0.12, Repoman-3.0.2 Signed-off-by: Fabian Groffen <grobian@gentoo.org>
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Michał Górny · gentoo
dev-python/scipy: Bump to 1.6.0
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Michał Górny · gentoo
dev-python/scipy: Bump to 1.5.4
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Michał Górny · gentoo
dev-python/scipy: Bump to 1.5.3
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Michał Górny · gentoo
dev-python/scipy: Remove old
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Michał Górny · gentoo
Move {sci-libs → dev-python}/scipy
Signed-off-by: Michał Górny <mgorny@gentoo.org>