sci-biology / GBrowse

Generic Model Organism Database Project - The Generic Genome Browser

Official package sites : http://gmod.org/wiki/GBrowse ·

v2.48-r1 :: 0 :: gentoo

Modified
License
|| ( Artistic GPL-1+ )
Keywords
~amd64 ~x86
USE flags
minimal mysql postgres sqlite vhosts

General

minimal
Install a very minimal build (disables, for example, plugins, fonts, most drivers, non-critical features)
mysql
Add mySQL Database support
postgres
Add support for the postgresql database
sqlite
Add support for sqlite - embedded sql database
vhosts
Add support for installing web-based applications into a virtual-hosting environment

app-admin / webapp-config : Gentoo's installer for web-based applications

dev-lang / perl : Larry Wall's Practical Extraction and Report Language

dev-perl / Bio-Das : Interface to Distributed Annotation System

dev-perl / Bio-Graphics : Generate images from Bio::Seq objects for visualization purposes

dev-perl / Bio-SamTools : Read SAM/BAM database files

dev-perl / CGI-Session : persistent session data in CGI applications

dev-perl / Capture-Tiny : Capture STDOUT and STDERR from Perl, XS or external programs

dev-perl / Crypt-SSLeay : OpenSSL support for LWP

dev-perl / DBD-Pg : PostgreSQL database driver for the DBI module

dev-perl / DBD-SQLite : Self Contained RDBMS in a DBI Driver

dev-perl / DBD-mysql : MySQL driver for the Perl5 Database Interface (DBI)

dev-perl / DBI : Database independent interface for Perl

dev-perl / DB_File-Lock : Locking with flock wrapper for DB_File

dev-perl / FCGI : Fast CGI module

dev-perl / File-NFSLock : perl module to do NFS (or not) locking

dev-perl / GD : Interface to Thomas Boutell's gd library

dev-perl / GD-SVG : Seamlessly enable SVG output from scripts written using GD

dev-perl / IO-String : IO::File interface for in-core strings

dev-perl / JSON : JSON (JavaScript Object Notation) encoder/decoder

dev-perl / Module-Build : Build and install Perl modules

dev-perl / Net-OpenID-Consumer : Library for consumers of OpenID identities

dev-perl / Net-SMTP-SSL : (Deprecated) SSL support for Net::SMTP

dev-perl / Statistics-Descriptive : Module of basic descriptive statistical functions

dev-perl / libwww-perl : A collection of Perl Modules for the WWW

sci-biology / bioperl : Perl tools for bioinformatics - Core modules

app-admin / webapp-config : Gentoo's installer for web-based applications

dev-lang / perl : Larry Wall's Practical Extraction and Report Language

dev-perl / Bio-Das : Interface to Distributed Annotation System

dev-perl / Bio-Graphics : Generate images from Bio::Seq objects for visualization purposes

dev-perl / Bio-SamTools : Read SAM/BAM database files

dev-perl / CGI-Session : persistent session data in CGI applications

dev-perl / Crypt-SSLeay : OpenSSL support for LWP

dev-perl / DBD-Pg : PostgreSQL database driver for the DBI module

dev-perl / DBD-SQLite : Self Contained RDBMS in a DBI Driver

dev-perl / DBD-mysql : MySQL driver for the Perl5 Database Interface (DBI)

dev-perl / DBI : Database independent interface for Perl

dev-perl / DB_File-Lock : Locking with flock wrapper for DB_File

dev-perl / FCGI : Fast CGI module

dev-perl / File-NFSLock : perl module to do NFS (or not) locking

dev-perl / GD : Interface to Thomas Boutell's gd library

dev-perl / GD-SVG : Seamlessly enable SVG output from scripts written using GD

dev-perl / IO-String : IO::File interface for in-core strings

dev-perl / JSON : JSON (JavaScript Object Notation) encoder/decoder

dev-perl / Net-OpenID-Consumer : Library for consumers of OpenID identities

dev-perl / Net-SMTP-SSL : (Deprecated) SSL support for Net::SMTP

dev-perl / Statistics-Descriptive : Module of basic descriptive statistical functions

dev-perl / libwww-perl : A collection of Perl Modules for the WWW

sci-biology / bioperl : Perl tools for bioinformatics - Core modules

402849
sci-biology/GBrowse: add USE="chado" and its dependencies
513594
sci-biology/GBrowse-2.48::gentoo and sci-biology/gbrowse-2.48::science are duplicates?
Robin H. Johnson · gentoo
Drop $Id$ per council decision in bug #611234.
Signed-off-by: Robin H. Johnson <robbat2@gentoo.org>
Robin H. Johnson · gentoo
proj/gentoo: Initial commit
This commit represents a new era for Gentoo: Storing the gentoo-x86 tree in Git, as converted from CVS. This commit is the start of the NEW history. Any historical data is intended to be grafted onto this point. Creation process: 1. Take final CVS checkout snapshot 2. Remove ALL ChangeLog* files 3. Transform all Manifests to thin 4. Remove empty Manifests 5. Convert all stale $Header$/$Id$ CVS keywords to non-expanded Git $Id$ 5.1. Do not touch files with -kb/-ko keyword flags. Signed-off-by: Robin H. Johnson <robbat2@gentoo.org> X-Thanks: Alec Warner <antarus@gentoo.org> - did the GSoC 2006 migration tests X-Thanks: Robin H. Johnson <robbat2@gentoo.org> - infra guy, herding this project X-Thanks: Nguyen Thai Ngoc Duy <pclouds@gentoo.org> - Former Gentoo developer, wrote Git features for the migration X-Thanks: Brian Harring <ferringb@gentoo.org> - wrote much python to improve cvs2svn X-Thanks: Rich Freeman <rich0@gentoo.org> - validation scripts X-Thanks: Patrick Lauer <patrick@gentoo.org> - Gentoo dev, running new 2014 work in migration X-Thanks: Michał Górny <mgorny@gentoo.org> - scripts, QA, nagging X-Thanks: All of other Gentoo developers - many ideas and lots of paint on the bikeshed