{"bugs":[{"bugid":919473,"firstseen":"2025-07-11T02:48:40.189262","severity":"normal","status":"CONFIRMED","summary":"sci-biology\/amap-2.2-r5 - [clang] .\/MultiSequenceDag.h: error: no template named binary_function; did you"},{"bugid":938872,"firstseen":"2025-07-11T02:48:40.189262","severity":"normal","status":"CONFIRMED","summary":"sci-biology\/amap: treeclean request"}],"categories":[{"categoryid":449,"name":"app-arch","summary":"The app-arch category contains tools for archiving, compressing and uncompressing files or groups of files."},{"categoryid":406,"name":"dev-java","summary":"The dev-java category contains libraries and utilities relevant to the Java programming language."},{"categoryid":353,"name":"sci-biology","summary":"The sci-biology category contains software that can be used in biological and related scientific environments."},{"categoryid":396,"name":"virtual","summary":"The virtual category contains packages which satisfy virtual dependencies."}],"changelog":[{"authoremail":"repomirrorci@gentoo.org","authorname":"Repository mirror & CI","commitid":"5f9d3760ac335bb2deb30f0a32a1ed4c863f9db1","committime":"2024-09-01T10:04:12","packageid":50287,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"repomirrorci@gentoo.org","authorname":"Repository mirror & CI","commitid":"166eab5dd4bef7fbea03584fbb84b2a599a79202","committime":"2024-08-27T07:48:58","packageid":50287,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"gentoo@pogatzki.net","authorname":"Volkmar W. Pogatzki","body":"Signed-off-by: Volkmar W. Pogatzki \nSigned-off-by: Miroslav Šulc ","commitid":"b99f0870b03cfc15665350f9a47c3820b59a8b89","committime":"2024-07-01T07:14:20","packageid":50287,"repoid":1,"summary":"sci-biology\/amap: drop 2.2-r5"},{"authoremail":"gentoo@pogatzki.net","authorname":"Volkmar W. Pogatzki","body":"Signed-off-by: Volkmar W. Pogatzki \nCloses: https:\/\/github.com\/gentoo\/gentoo\/pull\/37468\/commits\/0b394429f6c5387f57fbc675683e003eaff25337\nSigned-off-by: Miroslav Šulc ","commitid":"810687b6a989cbc43cadcb8201e800c6628970e2","committime":"2024-07-01T06:35:40","packageid":50287,"repoid":1,"summary":"sci-biology\/amap: build with java-pkg-simple, add apidocs"},{"authoremail":"repomirrorci@gentoo.org","authorname":"Repository mirror & CI","commitid":"af6f0e8ef0bcb907ba1d0760fbc87f04990100a3","committime":"2022-07-07T20:01:37","packageid":50287,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"soap@gentoo.org","authorname":"David Seifert","body":"Closes: https:\/\/bugs.gentoo.org\/725288\nSigned-off-by: David Seifert ","commitid":"bd2ca3655e9c6b2bdee3a7bd70a33e68bb3599c0","committime":"2022-07-07T19:56:42","packageid":50287,"repoid":1,"summary":"sci-biology\/amap: update EAPI 6 -> 8"},{"authoremail":"repomirrorci@gentoo.org","authorname":"Repository mirror & CI","commitid":"b2f7d0f57d29c8d4983c01c3bf54d9c1741fd58b","committime":"2021-06-06T18:20:05","packageid":50287,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"pacho@gentoo.org","authorname":"Pacho Ramos","body":"And fix homepage\n\nCloses: https:\/\/bugs.gentoo.org\/787641\nCloses: https:\/\/bugs.gentoo.org\/626674\nPackage-Manager: Portage-3.0.19, Repoman-3.0.3\nSigned-off-by: Pacho Ramos ","commitid":"b0c6eb6ebdf58ed61cd91e969a1ba347e6648abd","committime":"2021-06-06T17:47:26","packageid":50287,"repoid":1,"summary":"sci-biology\/amap: Support newer java"},{"authoremail":"repo-qa-checks@gentoo.org","authorname":"Repository QA checks","commitid":"25093d6359f778b8d1052f66ba9e26fc29ded21a","committime":"2017-02-28T20:35:29","packageid":50287,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"robbat2@gentoo.org","authorname":"Robin H. Johnson","body":"Signed-off-by: Robin H. Johnson ","commitid":"61b861acd7b49083dab687e133f30f3331cb7480","committime":"2017-02-28T19:47:27","packageid":50287,"repoid":1,"summary":"Drop $Id$ per council decision in bug #611234."},{"authoremail":"repo-qa-checks@gentoo.org","authorname":"Repository QA checks","commitid":"8f111388a6defcdc846f7f545769b7e1705050d4","committime":"2017-02-25T19:22:09","packageid":50287,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"soap@gentoo.org","authorname":"David Seifert","body":"Package-Manager: Portage-2.3.3, Repoman-2.3.1","commitid":"828db7aea56a4ca346c7f4d5282ed30006211180","committime":"2017-02-25T17:55:37","packageid":50287,"repoid":1,"summary":"sci-biology\/amap: Remove old"},{"authoremail":"soap@gentoo.org","authorname":"David Seifert","body":"Package-Manager: Portage-2.3.3, Repoman-2.3.1","commitid":"0eb34b26dabe226e954c42a2a914a0d522a45d2c","committime":"2017-02-25T17:54:59","packageid":50287,"repoid":1,"summary":"sci-biology\/amap: Modernise to EAPI 6"},{"authoremail":"repo-qa-checks@gentoo.org","authorname":"Repository QA checks","commitid":"945f0d2a26da4f944fd06ad6a874f69d37ce1e06","committime":"2015-08-09T09:26:46","packageid":50287,"repoid":1,"summary":"2015-08-09 09:26:21 UTC"},{"authoremail":"robbat2@gentoo.org","authorname":"Robin H. Johnson","body":"This commit represents a new era for Gentoo:\nStoring the gentoo-x86 tree in Git, as converted from CVS.\n\nThis commit is the start of the NEW history.\nAny historical data is intended to be grafted onto this point.\n\nCreation process:\n1. Take final CVS checkout snapshot\n2. Remove ALL ChangeLog* files\n3. Transform all Manifests to thin\n4. Remove empty Manifests\n5. Convert all stale $Header$\/$Id$ CVS keywords to non-expanded Git $Id$\n5.1. Do not touch files with -kb\/-ko keyword flags.\n\nSigned-off-by: Robin H. Johnson \nX-Thanks: Alec Warner - did the GSoC 2006 migration tests\nX-Thanks: Robin H. Johnson - infra guy, herding this project\nX-Thanks: Nguyen Thai Ngoc Duy - Former Gentoo developer, wrote Git features for the migration\nX-Thanks: Brian Harring - wrote much python to improve cvs2svn\nX-Thanks: Rich Freeman - validation scripts\nX-Thanks: Patrick Lauer - Gentoo dev, running new 2014 work in migration\nX-Thanks: Michał Górny - scripts, QA, nagging\nX-Thanks: All of other Gentoo developers - many ideas and lots of paint on the bikeshed","commitid":"56bd759df1d0c750a065b8c845e93d5dfa6b549d","committime":"2015-08-08T20:49:04","packageid":50287,"repoid":1,"summary":"proj\/gentoo: Initial commit"},{"authoremail":"repo-qa-checks@gentoo.org","authorname":"Repository QA checks","commitid":"a637bd65b7fef8e2be4e7fc6e9097479372e0e2e","committime":"2015-06-19T16:38:33","packageid":50287,"repoid":1,"summary":"2015-06-19 16:35:30 UTC"}],"dependencies":[{"block":false,"categoryid":396,"description":"Virtual for Java Development Kit (JDK)","ebuildids":[836443],"firstseen":"2010-05-04T00:54:45.661860","maintainer":"java@gentoo.org","maintainername":"Java","name":"jdk","packageid":42905},{"block":false,"categoryid":449,"description":"Info ZIP (encryption support)","ebuildids":[836443],"firstseen":"2010-05-04T00:54:45.661860","maintainer":"base-system@gentoo.org","maintainername":"Gentoo Base System","name":"zip","packageid":45057},{"block":false,"categoryid":406,"description":"Java environment configuration query tool","ebuildids":[836443],"firstseen":"2010-05-04T00:54:45.661860","maintainer":"java@gentoo.org","maintainername":"Java","name":"java-config","packageid":51445,"summary":"java-config is used to configure the Java subsystem on your Gentoo installation. In particular, it can be used to configure system-wide and per-user default JVMs, construct classpath env vars from installed java packages and be used to query for the path to various JDK tools."}],"depending":[],"ebuilds":[{"archs":["~amd64","~x86"],"ebuildid":836443,"firstseen":"2024-08-27T09:04:20.424077","license":"GPL-2","moddate":"2025-07-14T19:17:07","packageid":50287,"repoid":1,"slot":"0","uses":["doc","java","source"],"version":"2.2-r6"}],"masks":[],"package":{"categoryid":353,"description":"Protein multiple-alignment-based sequence annealing","firstseen":"2010-05-04T00:54:45.661860","maintainer":"sci-biology@gentoo.org","maintainername":"Gentoo Biology Project","name":"amap","packageid":50287},"rdependencies":[{"block":false,"categoryid":449,"description":"Info ZIP (encryption support)","ebuildids":[836443],"firstseen":"2010-05-04T00:54:45.661860","maintainer":"base-system@gentoo.org","maintainername":"Gentoo Base System","name":"zip","packageid":45057},{"block":false,"categoryid":406,"description":"Java environment configuration query tool","ebuildids":[836443],"firstseen":"2010-05-04T00:54:45.661860","maintainer":"java@gentoo.org","maintainername":"Java","name":"java-config","packageid":51445,"summary":"java-config is used to configure the Java subsystem on your Gentoo installation. In particular, it can be used to configure system-wide and per-user default JVMs, construct classpath env vars from installed java packages and be used to query for the path to various JDK tools."},{"block":false,"categoryid":396,"description":"Virtual for Java Runtime Environment (JRE)","ebuildids":[836443],"firstseen":"2010-05-04T00:54:45.661860","maintainer":"java@gentoo.org","maintainername":"Java","name":"jre","packageid":54546}],"repos":[{"branch":"master","lastcommit":"272857559e855c6d0abbcf03b66b5ef62a576843","name":"gentoo","path":"\/usr\/portage","repoid":1,"upstream":"origin"}],"tracked":false,"urls":["https:\/\/wiki.gentoo.org\/wiki\/No_homepage"],"uses":[{"description":"Add extra documentation (API, Javadoc, etc). It is recommended to enable per package instead of globally","isdefault":false,"use":"doc"},{"description":"Add support for Java","isdefault":false,"use":"java"},{"description":"Zip the sources and install them","isdefault":false,"use":"source"}]}