{"bugs":[{"bugid":868363,"firstseen":"2022-09-04T08:53:12.215494","severity":"normal","status":"CONFIRMED","summary":"sci-biology\/augustus-3.4.0-r3 calls g++ directly"},{"bugid":873025,"firstseen":"2022-09-26T10:54:35.405922","severity":"normal","status":"CONFIRMED","summary":"sci-biology\/augustus-3.4.0-r2 fails tests (MUSL)"},{"bugid":940693,"firstseen":"2024-10-03T10:02:24.231764","severity":"normal","status":"CONFIRMED","summary":"sci-biology\/augustus-2.5.5 - [ncurses-6.5] [libtool] [gcc-15] list.c: error: implicit declaration of function FatalError [-Wimplicit-function-declaration]"}],"categories":[{"categoryid":452,"name":"dev-db","summary":"The dev-db category contains libraries and utilities for database related programming."},{"categoryid":393,"name":"dev-libs","summary":"The dev-libs category contains various miscellaneous programming libraries."},{"categoryid":353,"name":"sci-biology","summary":"The sci-biology category contains software that can be used in biological and related scientific environments."},{"categoryid":318,"name":"sci-libs","summary":"The sci-libs category contains various science-related libraries."},{"categoryid":317,"name":"sci-mathematics","summary":"The sci-mathematics category contains mathematical software."},{"categoryid":381,"name":"sys-libs","summary":"The sys-libs category contains various system-level libraries."}],"changelog":[{"authoremail":"repomirrorci@gentoo.org","authorname":"Repository mirror & CI","commitid":"2787fcfad93d0bd14da9380e0f852c46cefde2b3","committime":"2025-04-14T16:05:14","packageid":54585,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"sam@gentoo.org","authorname":"Sam James","body":"Signed-off-by: Sam James ","commitid":"62bb07cf8ef1d17c2ab1228094b5aa4694bb602d","committime":"2025-04-14T15:57:55","packageid":54585,"repoid":1,"summary":"sci-biology\/augustus: Stabilize 3.4.0-r3 amd64, #920140"},{"authoremail":"repomirrorci@gentoo.org","authorname":"Repository mirror & CI","commitid":"59b3298e63b2ba0beeb78e2f6e047eda1593b368","committime":"2025-02-13T09:24:23","packageid":54585,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"parona@protonmail.com","authorname":"Alfred Wingate","body":"Closes: https:\/\/bugs.gentoo.org\/949617\nSigned-off-by: Alfred Wingate \nCloses: https:\/\/github.com\/gentoo\/gentoo\/pull\/40531\nSigned-off-by: Sam James ","commitid":"eb668702f3bd1a2f3b9ff0e7ad4f19edca41fb76","committime":"2025-02-11T13:05:38","packageid":54585,"repoid":1,"summary":"sci-biology\/augustus: fix gcc15 build"},{"authoremail":"repomirrorci@gentoo.org","authorname":"Repository mirror & CI","commitid":"60d61ddbb782f5616b0a2fb35b118da4c6619165","committime":"2025-02-11T01:48:34","packageid":54585,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"sam@gentoo.org","authorname":"Sam James","body":"... to match execution order.\n\nSigned-off-by: Sam James ","commitid":"b9a680c3170455acf212a7f50c2249c061968cba","committime":"2025-02-11T01:37:12","packageid":54585,"repoid":1,"summary":"sci-biology\/augustus: fix phase definition order"},{"authoremail":"parona@protonmail.com","authorname":"Alfred Wingate","body":"Closes: https:\/\/bugs.gentoo.org\/895204\nSigned-off-by: Alfred Wingate \nSigned-off-by: Sam James ","commitid":"46398746b50dc4be683f7777230477bef9780ee7","committime":"2025-02-10T19:15:07","packageid":54585,"repoid":1,"summary":"sci-biology\/augustus: include cstdint for gcc-13"},{"authoremail":"parona@protonmail.com","authorname":"Alfred Wingate","body":"* Add missing dependency on python with tests.\n* Wire up unittests.\n* Disable test comparing on musl. This follows upstream with non-amd64 and\n non-linux environments.\n\nBug: https:\/\/bugs.gentoo.org\/868363\nBug: https:\/\/bugs.gentoo.org\/873025\nSigned-off-by: Alfred Wingate \nCloses: https:\/\/github.com\/gentoo\/gentoo\/pull\/40521\nSigned-off-by: Sam James ","commitid":"7fdfd97f34314b9fb85bcbadb46efc07b94b67aa","committime":"2025-02-10T19:14:46","packageid":54585,"repoid":1,"summary":"sci-biology\/augustus: add 3.5.0"},{"authoremail":"repomirrorci@gentoo.org","authorname":"Repository mirror & CI","commitid":"f2979793991144637956e4225ce4d0235900c1a2","committime":"2023-06-09T15:16:56","packageid":54585,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"arthurzam@gentoo.org","authorname":"Arthur Zamarin","body":"Signed-off-by: Arthur Zamarin ","commitid":"7cfe7ab29638264f1dcf98d78ad189516f5f1da1","committime":"2023-06-03T14:45:26","packageid":54585,"repoid":1,"summary":"sci-biology\/augustus: destabilize for ~x86"},{"authoremail":"repomirrorci@gentoo.org","authorname":"Repository mirror & CI","commitid":"a97958ff65140b6346822bc23309facaf3c1ee5e","committime":"2023-02-04T17:31:53","packageid":54585,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"sam@gentoo.org","authorname":"Sam James","body":"Bug: https:\/\/bugs.gentoo.org\/614866\nSigned-off-by: Sam James ","commitid":"25774a0a53557d280b9519cd6b85cf7da886e95f","committime":"2023-02-04T17:19:53","packageid":54585,"repoid":1,"summary":"sci-biology\/augustus: add lpsolve subslot dep"},{"authoremail":"repomirrorci@gentoo.org","authorname":"Repository mirror & CI","commitid":"e697309540271067ac48ba6fd85e0fa730290863","committime":"2022-09-03T22:16:50","packageid":54585,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"sam@gentoo.org","authorname":"Sam James","body":"Closes: https:\/\/bugs.gentoo.org\/832187\nSigned-off-by: Sam James ","commitid":"792d8f2c5fe18c131fc63df1dda88c4d791eb5bf","committime":"2022-09-03T22:09:15","packageid":54585,"repoid":1,"summary":"sci-biology\/augustus: respect CC, CXX"},{"authoremail":"sam@gentoo.org","authorname":"Sam James","body":"Closes: https:\/\/bugs.gentoo.org\/864773\nSigned-off-by: Sam James ","commitid":"405d411472329b890d43b44367b7874514c30379","committime":"2022-09-03T22:04:43","packageid":54585,"repoid":1,"summary":"sci-biology\/augustus: fix Boost dep"},{"authoremail":"repomirrorci@gentoo.org","authorname":"Repository mirror & CI","commitid":"4d3a85ee194f8c9541e9d822d8d3dbb11491d198","committime":"2022-01-28T22:06:54","packageid":54585,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"andrewammerlaan@gentoo.org","authorname":"Andrew Ammerlaan","body":"Closes: https:\/\/bugs.gentoo.org\/832186\nPackage-Manager: Portage-3.0.30, Repoman-3.0.3\nSigned-off-by: Andrew Ammerlaan ","commitid":"c974dd2172656250d7e432b3619652ea68b1e723","committime":"2022-01-28T21:48:40","packageid":54585,"repoid":1,"summary":"sci-biology\/augustus: add forgotten runtime dependency"},{"authoremail":"repomirrorci@gentoo.org","authorname":"Repository mirror & CI","commitid":"82c69a16c6d401bca14c57d06b163668bc52dabe","committime":"2022-01-27T21:21:22","packageid":54585,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"andrewammerlaan@gentoo.org","authorname":"Andrew Ammerlaan","body":"Closes: https:\/\/bugs.gentoo.org\/515996\nPackage-Manager: Portage-3.0.30, Repoman-3.0.3\nSigned-off-by: Andrew Ammerlaan ","commitid":"aea4f8147ac23b904f17d3890b398d5fb30c9eee","committime":"2022-01-27T19:08:10","packageid":54585,"repoid":1,"summary":"sci-biology\/augustus: add version 3.4.0"},{"authoremail":"repomirrorci@gentoo.org","authorname":"Repository mirror & CI","commitid":"0da74f9e557ec388bdcfe974722f0f8c59012b4f","committime":"2019-12-11T00:25:48","packageid":54585,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"soap@gentoo.org","authorname":"David Seifert","body":"Package-Manager: Portage-2.3.81, Repoman-2.3.20\nSigned-off-by: David Seifert ","commitid":"c5138c7f261799f62b944004c108f7a01b138be7","committime":"2019-12-10T23:48:28","packageid":54585,"repoid":1,"summary":"sci-biology\/augustus: Port to EAPI 7"},{"authoremail":"repo-qa-checks@gentoo.org","authorname":"Repository QA checks","commitid":"25093d6359f778b8d1052f66ba9e26fc29ded21a","committime":"2017-02-28T20:35:29","packageid":54585,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"robbat2@gentoo.org","authorname":"Robin H. Johnson","body":"Signed-off-by: Robin H. Johnson ","commitid":"61b861acd7b49083dab687e133f30f3331cb7480","committime":"2017-02-28T19:47:27","packageid":54585,"repoid":1,"summary":"Drop $Id$ per council decision in bug #611234."},{"authoremail":"repo-qa-checks@gentoo.org","authorname":"Repository QA checks","commitid":"945f0d2a26da4f944fd06ad6a874f69d37ce1e06","committime":"2015-08-09T09:26:46","packageid":54585,"repoid":1,"summary":"2015-08-09 09:26:21 UTC"},{"authoremail":"robbat2@gentoo.org","authorname":"Robin H. Johnson","body":"This commit represents a new era for Gentoo:\nStoring the gentoo-x86 tree in Git, as converted from CVS.\n\nThis commit is the start of the NEW history.\nAny historical data is intended to be grafted onto this point.\n\nCreation process:\n1. Take final CVS checkout snapshot\n2. Remove ALL ChangeLog* files\n3. Transform all Manifests to thin\n4. Remove empty Manifests\n5. Convert all stale $Header$\/$Id$ CVS keywords to non-expanded Git $Id$\n5.1. Do not touch files with -kb\/-ko keyword flags.\n\nSigned-off-by: Robin H. Johnson \nX-Thanks: Alec Warner - did the GSoC 2006 migration tests\nX-Thanks: Robin H. Johnson - infra guy, herding this project\nX-Thanks: Nguyen Thai Ngoc Duy - Former Gentoo developer, wrote Git features for the migration\nX-Thanks: Brian Harring - wrote much python to improve cvs2svn\nX-Thanks: Rich Freeman - validation scripts\nX-Thanks: Patrick Lauer - Gentoo dev, running new 2014 work in migration\nX-Thanks: Michał Górny - scripts, QA, nagging\nX-Thanks: All of other Gentoo developers - many ideas and lots of paint on the bikeshed","commitid":"56bd759df1d0c750a065b8c845e93d5dfa6b549d","committime":"2015-08-08T20:49:04","packageid":54585,"repoid":1,"summary":"proj\/gentoo: Initial commit"},{"authoremail":"repo-qa-checks@gentoo.org","authorname":"Repository QA checks","commitid":"a637bd65b7fef8e2be4e7fc6e9097479372e0e2e","committime":"2015-06-19T16:38:33","packageid":54585,"repoid":1,"summary":"2015-06-19 16:35:30 UTC"}],"dependencies":[{"block":false,"categoryid":318,"description":"Metapackage for a suite of sparse matrix tools","ebuildids":[777090,853615],"firstseen":"2010-05-04T00:54:45.661860","maintainer":"sci@gentoo.org","maintainername":"Gentoo Science Project","name":"suitesparse","packageid":42578,"summary":"SuiteSparse is a suite of sparse matrix libraries from University of Florida Computer Science Department. 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