sci-biology / augustus

Eukaryotic gene predictor

Official package sites : https://bioinf.uni-greifswald.de/augustus/ ·

v3.4.0-r3 :: 0 :: gentoo

Modified
License
Artistic
Keywords
~amd64 ~x86
USE flags
doc

v2.5.5 :: 0 :: gentoo

Modified
License
Artistic
Keywords
amd64 ~x86
USE flags
examples

General

doc
Add extra documentation (API, Javadoc, etc). It is recommended to enable per package instead of globally
examples
Install examples, usually source code

dev-db / mysql++ : C++ API interface to the MySQL database

dev-db / mysql-connector-c : C client library for MariaDB/MySQL

dev-db / sqlite : SQL database engine

dev-libs / boost : Boost Libraries for C++

sci-biology / bamtools : A programmer's API and an end-user's toolkit for handling BAM files

sci-biology / samtools : Utilities for analysing and manipulating the SAM/BAM alignment formats

sci-libs / gsl : The GNU Scientific Library

sci-libs / htslib : C library for high-throughput sequencing data formats

sci-libs / suitesparse : Metapackage for a suite of sparse matrix tools

sci-mathematics / lpsolve : Mixed Integer Linear Programming (MILP) solver

sys-libs / zlib : Standard (de)compression library

dev-db / mysql++ : C++ API interface to the MySQL database

dev-db / mysql-connector-c : C client library for MariaDB/MySQL

dev-db / sqlite : SQL database engine

dev-libs / boost : Boost Libraries for C++

sci-biology / bamtools : A programmer's API and an end-user's toolkit for handling BAM files

sci-biology / samtools : Utilities for analysing and manipulating the SAM/BAM alignment formats

sci-libs / gsl : The GNU Scientific Library

sci-libs / htslib : C library for high-throughput sequencing data formats

sci-libs / suitesparse : Metapackage for a suite of sparse matrix tools

sci-mathematics / lpsolve : Mixed Integer Linear Programming (MILP) solver

sys-libs / zlib : Standard (de)compression library

868363
sci-biology/augustus-3.4.0-r3 calls g++ directly
873025
sci-biology/augustus-3.4.0-r2 fails tests (MUSL)
895204
sci-biology/augustus-3.4.0-r3 - ../.../sqliteDB.hh: error: uint64_t has not been declared
920140
sci-biology/augustus-3.4.0-r3 and friends: stablereq
Repository mirror & CI · gentoo
Merge updates from master
Arthur Zamarin · gentoo
sci-biology/augustus: destabilize for ~x86
Signed-off-by: Arthur Zamarin <arthurzam@gentoo.org>
Repository mirror & CI · gentoo
Merge updates from master
Sam James · gentoo
sci-biology/augustus: add lpsolve subslot dep
Bug: https://bugs.gentoo.org/614866 Signed-off-by: Sam James <sam@gentoo.org>
Repository mirror & CI · gentoo
Merge updates from master
Sam James · gentoo
sci-biology/augustus: respect CC, CXX
Closes: https://bugs.gentoo.org/832187 Signed-off-by: Sam James <sam@gentoo.org>
Sam James · gentoo
sci-biology/augustus: fix Boost dep
Closes: https://bugs.gentoo.org/864773 Signed-off-by: Sam James <sam@gentoo.org>
Repository mirror & CI · gentoo
Merge updates from master
Andrew Ammerlaan · gentoo
sci-biology/augustus: add forgotten runtime dependency
Closes: https://bugs.gentoo.org/832186 Package-Manager: Portage-3.0.30, Repoman-3.0.3 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
Repository mirror & CI · gentoo
Merge updates from master
Andrew Ammerlaan · gentoo
sci-biology/augustus: add version 3.4.0
Closes: https://bugs.gentoo.org/515996 Package-Manager: Portage-3.0.30, Repoman-3.0.3 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
Repository mirror & CI · gentoo
Merge updates from master
David Seifert · gentoo
sci-biology/augustus: Port to EAPI 7
Package-Manager: Portage-2.3.81, Repoman-2.3.20 Signed-off-by: David Seifert <soap@gentoo.org>
Robin H. Johnson · gentoo
Drop $Id$ per council decision in bug #611234.
Signed-off-by: Robin H. Johnson <robbat2@gentoo.org>
Robin H. Johnson · gentoo
proj/gentoo: Initial commit
This commit represents a new era for Gentoo: Storing the gentoo-x86 tree in Git, as converted from CVS. This commit is the start of the NEW history. Any historical data is intended to be grafted onto this point. Creation process: 1. Take final CVS checkout snapshot 2. Remove ALL ChangeLog* files 3. Transform all Manifests to thin 4. Remove empty Manifests 5. Convert all stale $Header$/$Id$ CVS keywords to non-expanded Git $Id$ 5.1. Do not touch files with -kb/-ko keyword flags. Signed-off-by: Robin H. Johnson <robbat2@gentoo.org> X-Thanks: Alec Warner <antarus@gentoo.org> - did the GSoC 2006 migration tests X-Thanks: Robin H. Johnson <robbat2@gentoo.org> - infra guy, herding this project X-Thanks: Nguyen Thai Ngoc Duy <pclouds@gentoo.org> - Former Gentoo developer, wrote Git features for the migration X-Thanks: Brian Harring <ferringb@gentoo.org> - wrote much python to improve cvs2svn X-Thanks: Rich Freeman <rich0@gentoo.org> - validation scripts X-Thanks: Patrick Lauer <patrick@gentoo.org> - Gentoo dev, running new 2014 work in migration X-Thanks: Michał Górny <mgorny@gentoo.org> - scripts, QA, nagging X-Thanks: All of other Gentoo developers - many ideas and lots of paint on the bikeshed