sci-biology / bamtools

A programmer's API and an end-user's toolkit for handling BAM files

Official package sites : https://github.com/pezmaster31/bamtools ·

BAM (Binary Alignment/Map) format is useful for storing large DNA sequence alignments. It is closely related to the text-based SAM format, but optimized for random-access. BamTools provides a fast, flexible C++ API for reading and writing BAM files.

v9999 :: 0/9999 :: gentoo

Modified
License
MIT
USE flags
static-libs

v2.5.1 :: 0/2.5.1 :: gentoo

Modified
License
MIT
Keywords
~amd64 ~x86
USE flags
static-libs

General

static-libs
Build static versions of dynamic libraries as well

dev-libs / jsoncpp : C++ JSON reader and writer

sys-libs / zlib : Standard (de)compression library

dev-libs / jsoncpp : C++ JSON reader and writer

sys-libs / zlib : Standard (de)compression library

sci-biology / express : Streaming RNA-Seq Analysis

Repository mirror & CI · gentoo
Merge updates from master
David Seifert · gentoo
sci-biology/bamtools: Bump to EAPI 7
Package-Manager: Portage-2.3.52, Repoman-2.3.12 Signed-off-by: David Seifert <soap@gentoo.org>
Repository mirror & CI · gentoo
Merge updates from master
David Seifert · gentoo
sci-biology/bamtools: Use ninja for building
Package-Manager: Portage-2.3.40, Repoman-2.3.9
David Seifert · gentoo
sci-biology/bamtools: Remove old
Package-Manager: Portage-2.3.19, Repoman-2.3.6
David Seifert · gentoo
sci-biology/bamtools: Version bump to 2.5.1
Package-Manager: Portage-2.3.19, Repoman-2.3.6
David Seifert · gentoo
sci-biology/bamtools: Add support for static libraries
Package-Manager: Portage-2.3.19, Repoman-2.3.6
David Seifert · gentoo
sci-biology/bamtools: Minor fixes
* Add 'virtual/pkgconfig' to DEPEND * Delete bundled libs for safety Package-Manager: Portage-2.3.11, Repoman-2.3.3
David Seifert · gentoo
sci-biology/bamtools: Remove old
Package-Manager: Portage-2.3.11, Repoman-2.3.3
David Seifert · gentoo
sci-biology/bamtools: Add live ebuild
Package-Manager: Portage-2.3.11, Repoman-2.3.3
David Seifert · gentoo
sci-biology/bamtools: Version bump to 2.4.2
Package-Manager: Portage-2.3.11, Repoman-2.3.3
Robin H. Johnson · gentoo
Drop $Id$ per council decision in bug #611234.
Signed-off-by: Robin H. Johnson <robbat2@gentoo.org>
T. Malfatti · gentoo
media-libs/portaudio: Version bump
David Seifert · gentoo
sci-biology/bamtools: Remove old
Package-Manager: portage-2.3.3 Closes: https://github.com/gentoo/gentoo/pull/3120
David Seifert · gentoo
sci-biology/bamtools: Version bump to 2.4.1
Gentoo-bug: 550144, 596208 * Make C++ mode agnostic * Unbundle jsoncpp and use more modern versions Package-Manager: portage-2.3.3
Justin Lecher · gentoo
sci-biology/bamtools: Add missing die and drop old patch
Package-Manager: portage-2.2.26 Signed-off-by: Justin Lecher <jlec@gentoo.org>
Ian Delaney · gentoo
Merge remote-tracking branch 'remotes/Elizafox/master'
Pull request: https://github.com/gentoo/gentoo/pull/466
Justin Lecher · gentoo
sci-biology/bamtools: Unbundle dev-libs/jsoncpp
Gentoo-Bug: https://bugs.gentoo.org/show_bug.cgi?id=568090 Package-Manager: portage-2.2.26 Signed-off-by: Justin Lecher <jlec@gentoo.org>
Justin Lecher · gentoo
sci-biology/bamtools: Restrict Version of dev-libs/jsoncpp in deps, bug #550144 https://github.com/pezmaster31/bamtools/issues/108
Package-Manager: portage-2.2.20.1 Signed-off-by: Justin Lecher <jlec@gentoo.org>
Robin H. Johnson · gentoo
proj/gentoo: Initial commit
This commit represents a new era for Gentoo: Storing the gentoo-x86 tree in Git, as converted from CVS. This commit is the start of the NEW history. Any historical data is intended to be grafted onto this point. Creation process: 1. Take final CVS checkout snapshot 2. Remove ALL ChangeLog* files 3. Transform all Manifests to thin 4. Remove empty Manifests 5. Convert all stale $Header$/$Id$ CVS keywords to non-expanded Git $Id$ 5.1. Do not touch files with -kb/-ko keyword flags. Signed-off-by: Robin H. Johnson <robbat2@gentoo.org> X-Thanks: Alec Warner <antarus@gentoo.org> - did the GSoC 2006 migration tests X-Thanks: Robin H. Johnson <robbat2@gentoo.org> - infra guy, herding this project X-Thanks: Nguyen Thai Ngoc Duy <pclouds@gentoo.org> - Former Gentoo developer, wrote Git features for the migration X-Thanks: Brian Harring <ferringb@gentoo.org> - wrote much python to improve cvs2svn X-Thanks: Rich Freeman <rich0@gentoo.org> - validation scripts X-Thanks: Patrick Lauer <patrick@gentoo.org> - Gentoo dev, running new 2014 work in migration X-Thanks: Michał Górny <mgorny@gentoo.org> - scripts, QA, nagging X-Thanks: All of other Gentoo developers - many ideas and lots of paint on the bikeshed