Summary
BAM (Binary Alignment/Map) format is useful for storing large DNA sequence alignments. It is closely related to the text-based SAM format, but optimized for random-access. BamTools provides a fast, flexible C++ API for reading and writing BAM files.
Versions
v9999 :: 0/9999 :: gentoo
- Modified
- License
- MIT
v2.5.3 :: 0/2.5.3 :: gentoo
- Modified
- License
- MIT
- Keywords
- amd64 ~x86
Dependencies
Runtime Dependencies
Depending packages
sci-biology / augustus : Eukaryotic gene predictor
Change logs
- Repository mirror & CI · gentoo
Merge updates from master - Michał Górny · gentoo
sci-*/*: update for virtual/zlib
Update done using: ``` git grep -l sys-libs/zlib dev-* | xargs sed -i -e s@sys-libs/zlib@virtual/zlib@g git diff --name-only | xargs copybump git diff --name-only | xargs grep -l PYTHON_COMPAT | xargs gpy-impl -@dead pkgcheck scan --commits -c SourcingCheck,VisibilityCheck --exit error ``` Signed-off-by: Michał Górny <mgorny@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - Repository mirror & CI · gentoo
Merge updates from master - Arthur Zamarin · gentoo
sci-biology/bamtools: Stabilize 2.5.3 amd64, #956330
Signed-off-by: Arthur Zamarin <arthurzam@gentoo.org> - Andreas Sturmlechner · gentoo
sci-biology/bamtools: drop 2.5.2, 2.5.2-r1
Closes: https://bugs.gentoo.org/956330 Signed-off-by: Andreas Sturmlechner <asturm@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - David Seifert · gentoo
sci-biology/bamtools: add 2.5.3
Signed-off-by: David Seifert <soap@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - Repository mirror & CI · gentoo
Merge updates from master - Sam James · gentoo
sci-biology/bamtools: Stabilize 2.5.2 amd64, #920140
Signed-off-by: Sam James <sam@gentoo.org> - NHOrus · gentoo
sci-biology/bamtools: update EAPI 7 -> 8 for live ebuild
Signed-off-by: NHOrus <jy6x2b32pie9@yahoo.com> Part-of: https://github.com/gentoo/gentoo/pull/41189 Closes: https://github.com/gentoo/gentoo/pull/41189 Signed-off-by: Sam James <sam@gentoo.org> - NHOrus · gentoo
sci-biology/bamtools: update EAPI 7 -> 8, fix build with CMake 4
Closes: https://bugs.gentoo.org/951630 Signed-off-by: NHOrus <jy6x2b32pie9@yahoo.com> Part-of: https://github.com/gentoo/gentoo/pull/41189 Signed-off-by: Sam James <sam@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - David Seifert · gentoo
sci-biology/bamtools: drop 2.5.1
Closes: https://bugs.gentoo.org/787200 Signed-off-by: David Seifert <soap@gentoo.org> - David Seifert · gentoo
sci-biology/bamtools: add 2.5.2
Bug: https://bugs.gentoo.org/787200 Signed-off-by: David Seifert <soap@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - Andreas Sturmlechner · gentoo
*/*: Switch sci-biology proj to cmake.eclass
Package-Manager: Portage-2.3.84, Repoman-2.3.20 Signed-off-by: Andreas Sturmlechner <asturm@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - David Seifert · gentoo
sci-biology/bamtools: Remove USE="static-libs"
Package-Manager: Portage-2.3.78, Repoman-2.3.17 Signed-off-by: David Seifert <soap@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - David Seifert · gentoo
sci-biology/bamtools: Bump to EAPI 7
Package-Manager: Portage-2.3.52, Repoman-2.3.12 Signed-off-by: David Seifert <soap@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - David Seifert · gentoo
sci-biology/bamtools: Use ninja for building
Package-Manager: Portage-2.3.40, Repoman-2.3.9 - David Seifert · gentoo
sci-biology/bamtools: Remove old
Package-Manager: Portage-2.3.19, Repoman-2.3.6 - David Seifert · gentoo
sci-biology/bamtools: Version bump to 2.5.1
Package-Manager: Portage-2.3.19, Repoman-2.3.6 - David Seifert · gentoo
sci-biology/bamtools: Add support for static libraries
Package-Manager: Portage-2.3.19, Repoman-2.3.6 - David Seifert · gentoo
sci-biology/bamtools: Minor fixes
* Add 'virtual/pkgconfig' to DEPEND * Delete bundled libs for safety Package-Manager: Portage-2.3.11, Repoman-2.3.3 - David Seifert · gentoo
sci-biology/bamtools: Remove old
Package-Manager: Portage-2.3.11, Repoman-2.3.3 - David Seifert · gentoo
sci-biology/bamtools: Add live ebuild
Package-Manager: Portage-2.3.11, Repoman-2.3.3 - David Seifert · gentoo
sci-biology/bamtools: Version bump to 2.4.2
Package-Manager: Portage-2.3.11, Repoman-2.3.3 - Robin H. Johnson · gentoo
Drop $Id$ per council decision in bug #611234.
Signed-off-by: Robin H. Johnson <robbat2@gentoo.org> - T. Malfatti · gentoo
media-libs/portaudio: Version bump - David Seifert · gentoo
sci-biology/bamtools: Remove old
Package-Manager: portage-2.3.3 Closes: https://github.com/gentoo/gentoo/pull/3120 - David Seifert · gentoo
sci-biology/bamtools: Version bump to 2.4.1
Gentoo-bug: 550144, 596208 * Make C++ mode agnostic * Unbundle jsoncpp and use more modern versions Package-Manager: portage-2.3.3 - Justin Lecher · gentoo
sci-biology/bamtools: Add missing die and drop old patch
Package-Manager: portage-2.2.26 Signed-off-by: Justin Lecher <jlec@gentoo.org> - Ian Delaney · gentoo
Merge remote-tracking branch 'remotes/Elizafox/master'
Pull request: https://github.com/gentoo/gentoo/pull/466 - Justin Lecher · gentoo
sci-biology/bamtools: Unbundle dev-libs/jsoncpp
Gentoo-Bug: https://bugs.gentoo.org/show_bug.cgi?id=568090 Package-Manager: portage-2.2.26 Signed-off-by: Justin Lecher <jlec@gentoo.org> - Justin Lecher · gentoo
sci-biology/bamtools: Restrict Version of dev-libs/jsoncpp in deps, bug #550144 https://github.com/pezmaster31/bamtools/issues/108
Package-Manager: portage-2.2.20.1 Signed-off-by: Justin Lecher <jlec@gentoo.org> - Robin H. Johnson · gentoo
proj/gentoo: Initial commit
This commit represents a new era for Gentoo: Storing the gentoo-x86 tree in Git, as converted from CVS. This commit is the start of the NEW history. Any historical data is intended to be grafted onto this point. Creation process: 1. Take final CVS checkout snapshot 2. Remove ALL ChangeLog* files 3. Transform all Manifests to thin 4. Remove empty Manifests 5. Convert all stale $Header$/$Id$ CVS keywords to non-expanded Git $Id$ 5.1. Do not touch files with -kb/-ko keyword flags. Signed-off-by: Robin H. Johnson <robbat2@gentoo.org> X-Thanks: Alec Warner <antarus@gentoo.org> - did the GSoC 2006 migration tests X-Thanks: Robin H. Johnson <robbat2@gentoo.org> - infra guy, herding this project X-Thanks: Nguyen Thai Ngoc Duy <pclouds@gentoo.org> - Former Gentoo developer, wrote Git features for the migration X-Thanks: Brian Harring <ferringb@gentoo.org> - wrote much python to improve cvs2svn X-Thanks: Rich Freeman <rich0@gentoo.org> - validation scripts X-Thanks: Patrick Lauer <patrick@gentoo.org> - Gentoo dev, running new 2014 work in migration X-Thanks: Michał Górny <mgorny@gentoo.org> - scripts, QA, nagging X-Thanks: All of other Gentoo developers - many ideas and lots of paint on the bikeshed