{"bugs":[],"categories":[{"categoryid":393,"name":"dev-libs","summary":"The dev-libs category contains various miscellaneous programming libraries."},{"categoryid":353,"name":"sci-biology","summary":"The sci-biology category contains software that can be used in biological and related scientific environments."},{"categoryid":396,"name":"virtual","summary":"The virtual category contains packages which satisfy virtual dependencies."}],"changelog":[{"authoremail":"repomirrorci@gentoo.org","authorname":"Repository mirror & CI","commitid":"5a1adb610b1d91ab6683cbe671e266f424224c16","committime":"2025-11-04T08:35:48","packageid":58945,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"mgorny@gentoo.org","authorname":"Michał Górny","body":"Update done using:\n\n```\ngit grep -l sys-libs\/zlib dev-* | xargs sed -i -e s@sys-libs\/zlib@virtual\/zlib@g\ngit diff --name-only | xargs copybump\ngit diff --name-only | xargs grep -l PYTHON_COMPAT | xargs gpy-impl -@dead\npkgcheck scan --commits -c SourcingCheck,VisibilityCheck --exit error\n```\n\nSigned-off-by: Michał Górny ","commitid":"f1351833569f8b22abc3dc9e74abeed7e8641096","committime":"2025-11-04T08:17:06","packageid":58945,"repoid":1,"summary":"sci-*\/*: update for virtual\/zlib"},{"authoremail":"repomirrorci@gentoo.org","authorname":"Repository mirror & CI","commitid":"47c22452f75607587e0359eb179ad8561643cbec","committime":"2025-05-21T19:39:38","packageid":58945,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"repomirrorci@gentoo.org","authorname":"Repository mirror & CI","commitid":"3cb6c1660d593fa8b908fb491eeed0d4729de443","committime":"2025-05-21T11:09:23","packageid":58945,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"arthurzam@gentoo.org","authorname":"Arthur Zamarin","body":"Signed-off-by: Arthur Zamarin ","commitid":"5cb0d7a845d18aa6dd2146084ca3b6b57db07c08","committime":"2025-05-21T10:56:43","packageid":58945,"repoid":1,"summary":"sci-biology\/bamtools: Stabilize 2.5.3 amd64, #956330"},{"authoremail":"asturm@gentoo.org","authorname":"Andreas Sturmlechner","body":"Closes: https:\/\/bugs.gentoo.org\/956330\nSigned-off-by: Andreas Sturmlechner ","commitid":"fb8d7bdcd12a5cf0f61019a71eac32d1df845e2d","committime":"2025-05-20T21:54:24","packageid":58945,"repoid":1,"summary":"sci-biology\/bamtools: drop 2.5.2, 2.5.2-r1"},{"authoremail":"repomirrorci@gentoo.org","authorname":"Repository mirror & CI","commitid":"5c541f07bf783d39434002d89f7d0bbd8e75aa69","committime":"2025-05-18T08:54:47","packageid":58945,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"soap@gentoo.org","authorname":"David Seifert","body":"Signed-off-by: David Seifert ","commitid":"aa34c5e1502a28fc8fb1e3c78fcbeae48269ff84","committime":"2025-05-18T08:27:44","packageid":58945,"repoid":1,"summary":"sci-biology\/bamtools: add 2.5.3"},{"authoremail":"repomirrorci@gentoo.org","authorname":"Repository mirror & CI","commitid":"d2dc4be7b554a6961086fbf9b9529593f3ca1db5","committime":"2025-04-24T19:20:11","packageid":58945,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"repomirrorci@gentoo.org","authorname":"Repository mirror & CI","commitid":"2787fcfad93d0bd14da9380e0f852c46cefde2b3","committime":"2025-04-14T16:05:14","packageid":58945,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"sam@gentoo.org","authorname":"Sam James","body":"Signed-off-by: Sam James ","commitid":"4d9daaddbf9be14bb21cad0241ea25b3c80b8a62","committime":"2025-04-14T15:57:55","packageid":58945,"repoid":1,"summary":"sci-biology\/bamtools: Stabilize 2.5.2 amd64, #920140"},{"authoremail":"jy6x2b32pie9@yahoo.com","authorname":"NHOrus","body":"Signed-off-by: NHOrus \nPart-of: https:\/\/github.com\/gentoo\/gentoo\/pull\/41189\nCloses: https:\/\/github.com\/gentoo\/gentoo\/pull\/41189\nSigned-off-by: Sam James ","commitid":"cf86189f9d542ba620b4f8a012b921346230e567","committime":"2025-03-20T07:44:04","packageid":58945,"repoid":1,"summary":"sci-biology\/bamtools: update EAPI 7 -> 8 for live ebuild"},{"authoremail":"jy6x2b32pie9@yahoo.com","authorname":"NHOrus","body":"Closes: https:\/\/bugs.gentoo.org\/951630\nSigned-off-by: NHOrus \nPart-of: https:\/\/github.com\/gentoo\/gentoo\/pull\/41189\nSigned-off-by: Sam James ","commitid":"069e8bde558ff12f4986bfe5230c366773ecfa84","committime":"2025-03-20T07:41:14","packageid":58945,"repoid":1,"summary":"sci-biology\/bamtools: update EAPI 7 -> 8, fix build with CMake 4"},{"authoremail":"repomirrorci@gentoo.org","authorname":"Repository mirror & CI","commitid":"41fa1b9bbfb25bcca0ad949bac7ce79d5bfa690a","committime":"2021-06-20T20:19:55","packageid":58945,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"soap@gentoo.org","authorname":"David Seifert","body":"Closes: https:\/\/bugs.gentoo.org\/787200\nSigned-off-by: David Seifert ","commitid":"92bb3cbc3bf6874aa00912882ef4fccc0d0c1223","committime":"2021-06-20T20:03:52","packageid":58945,"repoid":1,"summary":"sci-biology\/bamtools: drop 2.5.1"},{"authoremail":"soap@gentoo.org","authorname":"David Seifert","body":"Bug: https:\/\/bugs.gentoo.org\/787200\nSigned-off-by: David Seifert ","commitid":"76c0d35a1a7694289c8bf7fb3ebc19a159546e86","committime":"2021-06-20T20:03:49","packageid":58945,"repoid":1,"summary":"sci-biology\/bamtools: add 2.5.2"},{"authoremail":"repomirrorci@gentoo.org","authorname":"Repository mirror & CI","commitid":"20c2f9d69e1a74949010a18077d5126380694ea6","committime":"2020-01-05T18:25:29","packageid":58945,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"asturm@gentoo.org","authorname":"Andreas Sturmlechner","body":"Package-Manager: Portage-2.3.84, Repoman-2.3.20\nSigned-off-by: Andreas Sturmlechner ","commitid":"4ffa10f6a70318d6b036be816b8da47711eeebb7","committime":"2020-01-04T10:14:15","packageid":58945,"repoid":1,"summary":"*\/*: Switch sci-biology proj to cmake.eclass"},{"authoremail":"repomirrorci@gentoo.org","authorname":"Repository mirror & CI","commitid":"a016830e199941abc215e9df04d313b6a53c0c35","committime":"2019-11-13T18:25:45","packageid":58945,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"soap@gentoo.org","authorname":"David Seifert","body":"Package-Manager: Portage-2.3.78, Repoman-2.3.17\nSigned-off-by: David Seifert ","commitid":"a217ed25f690d9d4ed7b492df1d0d4205830fa3f","committime":"2019-11-13T18:16:02","packageid":58945,"repoid":1,"summary":"sci-biology\/bamtools: Remove USE=\"static-libs\""},{"authoremail":"repomirrorci@gentoo.org","authorname":"Repository mirror & CI","commitid":"9a8a88dd5f5cf305067f0d15c5071767ae36a85f","committime":"2018-12-13T14:27:58","packageid":58945,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"soap@gentoo.org","authorname":"David Seifert","body":"Package-Manager: Portage-2.3.52, Repoman-2.3.12\nSigned-off-by: David Seifert ","commitid":"e47f0847b07adb2e6d9bb0f3b1bd491c6f3535fa","committime":"2018-12-13T14:07:52","packageid":58945,"repoid":1,"summary":"sci-biology\/bamtools: Bump to EAPI 7"},{"authoremail":"repomirrorci@gentoo.org","authorname":"Repository mirror & CI","commitid":"c6b1d16a13befab717bb74d865e32f215b82da38","committime":"2018-06-02T13:44:03","packageid":58945,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"soap@gentoo.org","authorname":"David Seifert","body":"Package-Manager: Portage-2.3.40, Repoman-2.3.9","commitid":"72c315a37ce2ecc654db481686b75c7952d4dd2d","committime":"2018-06-02T10:58:59","packageid":58945,"repoid":1,"summary":"sci-biology\/bamtools: Use ninja for building"},{"authoremail":"repo-qa-checks@gentoo.org","authorname":"Repository QA checks","commitid":"0ef0abcfcd13f1932455ffcbbcc4b5289ffaa982","committime":"2017-12-23T19:21:02","packageid":58945,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"soap@gentoo.org","authorname":"David Seifert","body":"Package-Manager: Portage-2.3.19, Repoman-2.3.6","commitid":"483f71801c8c59240ed81cb1e7bc5e3aad9a2a19","committime":"2017-12-23T18:44:56","packageid":58945,"repoid":1,"summary":"sci-biology\/bamtools: Remove old"},{"authoremail":"soap@gentoo.org","authorname":"David Seifert","body":"Package-Manager: Portage-2.3.19, Repoman-2.3.6","commitid":"a4fea019175a1a73486a1f759b0cafc875826072","committime":"2017-12-23T18:44:09","packageid":58945,"repoid":1,"summary":"sci-biology\/bamtools: Version bump to 2.5.1"},{"authoremail":"soap@gentoo.org","authorname":"David Seifert","body":"Package-Manager: Portage-2.3.19, Repoman-2.3.6","commitid":"a1b05c071c6654e2c96dac44a6b2e599a56a42c7","committime":"2017-12-23T18:37:39","packageid":58945,"repoid":1,"summary":"sci-biology\/bamtools: Add support for static libraries"},{"authoremail":"repo-qa-checks@gentoo.org","authorname":"Repository QA checks","commitid":"ae9f631583e2578a337d436f40b077483f922c2d","committime":"2017-11-02T03:43:46","packageid":58945,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"soap@gentoo.org","authorname":"David Seifert","body":"* Add 'virtual\/pkgconfig' to DEPEND\n* Delete bundled libs for safety\n\nPackage-Manager: Portage-2.3.11, Repoman-2.3.3","commitid":"f271f6acc55e7d323a78cc9527507834b8bcedea","committime":"2017-11-02T03:30:46","packageid":58945,"repoid":1,"summary":"sci-biology\/bamtools: Minor fixes"},{"authoremail":"repo-qa-checks@gentoo.org","authorname":"Repository QA checks","commitid":"9eb7f113b32efb868d85af760209abfccbc6f9d9","committime":"2017-11-02T03:23:41","packageid":58945,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"soap@gentoo.org","authorname":"David Seifert","body":"Package-Manager: Portage-2.3.11, Repoman-2.3.3","commitid":"70aa79d9e30fc3338314000c13b71ab66bf8552b","committime":"2017-11-02T03:19:41","packageid":58945,"repoid":1,"summary":"sci-biology\/bamtools: Remove old"},{"authoremail":"soap@gentoo.org","authorname":"David Seifert","body":"Package-Manager: Portage-2.3.11, Repoman-2.3.3","commitid":"79838b33f1601376b91619946571004aa16be3a1","committime":"2017-11-02T03:19:37","packageid":58945,"repoid":1,"summary":"sci-biology\/bamtools: Add live ebuild"},{"authoremail":"soap@gentoo.org","authorname":"David Seifert","body":"Package-Manager: Portage-2.3.11, Repoman-2.3.3","commitid":"f84da63476bd6108105d349f74e6710237a8b290","committime":"2017-11-02T03:19:34","packageid":58945,"repoid":1,"summary":"sci-biology\/bamtools: Version bump to 2.4.2"},{"authoremail":"repo-qa-checks@gentoo.org","authorname":"Repository QA checks","commitid":"25093d6359f778b8d1052f66ba9e26fc29ded21a","committime":"2017-02-28T20:35:29","packageid":58945,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"robbat2@gentoo.org","authorname":"Robin H. Johnson","body":"Signed-off-by: Robin H. Johnson ","commitid":"61b861acd7b49083dab687e133f30f3331cb7480","committime":"2017-02-28T19:47:27","packageid":58945,"repoid":1,"summary":"Drop $Id$ per council decision in bug #611234."},{"authoremail":"malfatti@neuro.ufrn.br","authorname":"T. Malfatti","commitid":"8457ba6f9fd6f0dbafcca1fb375788eeea02aae1","committime":"2017-01-26T18:44:34","packageid":58945,"repoid":1,"summary":"media-libs\/portaudio: Version bump"},{"authoremail":"repo-qa-checks@gentoo.org","authorname":"Repository QA checks","commitid":"e29252f9b44bf6bc72709f9ed41289d92ee2654a","committime":"2016-12-15T08:21:51","packageid":58945,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"repo-qa-checks@gentoo.org","authorname":"Repository QA checks","commitid":"da8cb0ecfe75ef41c96e4c7f83dee1076d42e3b0","committime":"2016-12-14T23:02:09","packageid":58945,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"soap@gentoo.org","authorname":"David Seifert","body":"Package-Manager: portage-2.3.3\nCloses: https:\/\/github.com\/gentoo\/gentoo\/pull\/3120","commitid":"d7a2a3ae8f4c468241ac6597f1bea2273b154a53","committime":"2016-12-14T22:50:25","packageid":58945,"repoid":1,"summary":"sci-biology\/bamtools: Remove old"},{"authoremail":"soap@gentoo.org","authorname":"David Seifert","body":"Gentoo-bug: 550144, 596208\n* Make C++ mode agnostic\n* Unbundle jsoncpp and use more modern versions\n\nPackage-Manager: portage-2.3.3","commitid":"72bcf8aa8b3c95da31c4ae6bf4ccec376a7ec3ea","committime":"2016-12-14T22:42:36","packageid":58945,"repoid":1,"summary":"sci-biology\/bamtools: Version bump to 2.4.1"},{"authoremail":"repo-qa-checks@gentoo.org","authorname":"Repository QA checks","commitid":"ddabc9b1c3b0a3538ff31fa777db112cc131ae69","committime":"2015-12-13T14:21:47","packageid":58945,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"jlec@gentoo.org","authorname":"Justin Lecher","body":"Package-Manager: portage-2.2.26\nSigned-off-by: Justin Lecher ","commitid":"17bad73aea37d3a55e0cdff3e7e01117ea24773e","committime":"2015-12-13T12:25:33","packageid":58945,"repoid":1,"summary":"sci-biology\/bamtools: Add missing die and drop old patch"},{"authoremail":"repo-qa-checks@gentoo.org","authorname":"Repository QA checks","commitid":"caab377e6824d730033f74b5c29c568c511b51df","committime":"2015-12-13T10:01:49","packageid":58945,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"idella4@gentoo.org","authorname":"Ian Delaney","body":"Pull request: https:\/\/github.com\/gentoo\/gentoo\/pull\/466","commitid":"d82f5af3f983333786e8fccdb16fedd61e61d6b9","committime":"2015-12-13T09:59:05","packageid":58945,"repoid":1,"summary":"Merge remote-tracking branch 'remotes\/Elizafox\/master'"},{"authoremail":"jlec@gentoo.org","authorname":"Justin Lecher","body":"Gentoo-Bug: https:\/\/bugs.gentoo.org\/show_bug.cgi?id=568090\n\nPackage-Manager: portage-2.2.26\nSigned-off-by: Justin Lecher ","commitid":"8deb276adb49578cf19bce5ef8fe9394aa90db6f","committime":"2015-12-13T09:19:12","packageid":58945,"repoid":1,"summary":"sci-biology\/bamtools: Unbundle dev-libs\/jsoncpp"},{"authoremail":"repo-qa-checks@gentoo.org","authorname":"Repository QA checks","commitid":"f882d2a6db52a6cd05471deef4e2ff706240ecde","committime":"2015-08-16T21:12:53","packageid":58945,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"jlec@gentoo.org","authorname":"Justin Lecher","body":"Package-Manager: portage-2.2.20.1\nSigned-off-by: Justin Lecher ","commitid":"8c05129e3e2fce50f23c7c5c6015575f686f6e8f","committime":"2015-08-16T11:18:23","packageid":58945,"repoid":1,"summary":"sci-biology\/bamtools: Restrict Version of dev-libs\/jsoncpp in deps, bug #550144 https:\/\/github.com\/pezmaster31\/bamtools\/issues\/108"},{"authoremail":"repo-qa-checks@gentoo.org","authorname":"Repository QA checks","commitid":"945f0d2a26da4f944fd06ad6a874f69d37ce1e06","committime":"2015-08-09T09:26:46","packageid":58945,"repoid":1,"summary":"2015-08-09 09:26:21 UTC"},{"authoremail":"robbat2@gentoo.org","authorname":"Robin H. Johnson","body":"This commit represents a new era for Gentoo:\nStoring the gentoo-x86 tree in Git, as converted from CVS.\n\nThis commit is the start of the NEW history.\nAny historical data is intended to be grafted onto this point.\n\nCreation process:\n1. Take final CVS checkout snapshot\n2. Remove ALL ChangeLog* files\n3. Transform all Manifests to thin\n4. Remove empty Manifests\n5. Convert all stale $Header$\/$Id$ CVS keywords to non-expanded Git $Id$\n5.1. Do not touch files with -kb\/-ko keyword flags.\n\nSigned-off-by: Robin H. Johnson \nX-Thanks: Alec Warner - did the GSoC 2006 migration tests\nX-Thanks: Robin H. Johnson - infra guy, herding this project\nX-Thanks: Nguyen Thai Ngoc Duy - Former Gentoo developer, wrote Git features for the migration\nX-Thanks: Brian Harring - wrote much python to improve cvs2svn\nX-Thanks: Rich Freeman - validation scripts\nX-Thanks: Patrick Lauer - Gentoo dev, running new 2014 work in migration\nX-Thanks: Michał Górny - scripts, QA, nagging\nX-Thanks: All of other Gentoo developers - many ideas and lots of paint on the bikeshed","commitid":"56bd759df1d0c750a065b8c845e93d5dfa6b549d","committime":"2015-08-08T20:49:04","packageid":58945,"repoid":1,"summary":"proj\/gentoo: Initial commit"},{"authoremail":"repo-qa-checks@gentoo.org","authorname":"Repository QA checks","commitid":"a637bd65b7fef8e2be4e7fc6e9097479372e0e2e","committime":"2015-06-19T16:38:33","packageid":58945,"repoid":1,"summary":"2015-06-19 16:35:30 UTC"}],"dependencies":[{"block":false,"categoryid":393,"description":"C++ JSON reader and writer","ebuildids":[36361,863853],"firstseen":"2012-12-30T14:36:07.449682","maintainer":"phajdan.jr@gentoo.org","maintainername":"Pawel Hajdan jr","name":"jsoncpp","packageid":60175},{"block":false,"categoryid":396,"description":"Virtual for libz.so providers","ebuildids":[36361,863853],"firstseen":"2025-11-04T07:31:41.418357","name":"zlib","packageid":78605}],"depending":[{"block":false,"categoryid":353,"description":"Eukaryotic gene predictor","ebuildids":[777090,777090,853615,853615],"firstseen":"2010-05-04T00:54:45.661860","maintainer":"sci-biology@gentoo.org","maintainername":"Gentoo Biology Project","name":"augustus","packageid":54585}],"ebuilds":[{"archs":[],"ebuildid":36361,"firstseen":"2017-11-02T03:32:11.905171","license":"MIT","moddate":"2026-03-28T18:04:21","packageid":58945,"repoid":1,"slot":"0\/9999","uses":[],"version":"9999"},{"archs":["amd64","~x86"],"ebuildid":863853,"firstseen":"2025-05-18T10:14:36.370648","license":"MIT","moddate":"2026-03-28T18:04:21","packageid":58945,"repoid":1,"slot":"0\/2.5.3","uses":[],"version":"2.5.3"}],"masks":[],"package":{"categoryid":353,"description":"A programmer's API and an end-user's toolkit for handling BAM files","firstseen":"2012-02-26T14:35:52.932489","maintainer":"mmokrejs@gmail.com","maintainername":"Martin Mokrejs","name":"bamtools","packageid":58945,"summary":"BAM (Binary Alignment\/Map) format is useful for storing large DNA sequence alignments. It is closely related to the text-based SAM format, but optimized for random-access. BamTools provides a fast, flexible C++ API for reading and writing BAM files."},"rdependencies":[{"block":false,"categoryid":393,"description":"C++ JSON reader and writer","ebuildids":[36361,863853],"firstseen":"2012-12-30T14:36:07.449682","maintainer":"phajdan.jr@gentoo.org","maintainername":"Pawel Hajdan jr","name":"jsoncpp","packageid":60175},{"block":false,"categoryid":396,"description":"Virtual for libz.so providers","ebuildids":[36361,863853],"firstseen":"2025-11-04T07:31:41.418357","name":"zlib","packageid":78605}],"repos":[{"branch":"master","lastcommit":"52197549fd3431fa256b8edbafdcd3702dd0e134","name":"gentoo","path":"\/usr\/portage","repoid":1,"upstream":"origin"}],"tracked":false,"urls":["https:\/\/github.com\/pezmaster31\/bamtools"],"uses":[]}