sci-biology / bcftools

Utilities for variant calling and manipulating VCF and BCF files

Official package sites : http://www.htslib.org ·

v1.9-r2 :: 0 :: gentoo

Modified
License
MIT
Keywords
~amd64 ~x86

v1.5 :: 0 :: gentoo

Modified
License
MIT
Keywords
~amd64 ~x86

python_single_target

python3_6
Build for Python 3.6 only

python_targets

python2_7
Build with Python 2.7

dev-lang / perl : Larry Wall's Practical Extraction and Report Language

dev-lang / python : An interpreted, interactive, object-oriented programming language

dev-lang / python-exec : Python script wrapper

dev-python / matplotlib : Pure python plotting library with matlab like syntax

sci-libs / htslib : C library for high-throughput sequencing data formats

sys-libs / zlib : Standard (de)compression library

dev-lang / perl : Larry Wall's Practical Extraction and Report Language

dev-lang / python : An interpreted, interactive, object-oriented programming language

dev-lang / python-exec : Python script wrapper

dev-python / matplotlib : Pure python plotting library with matlab like syntax

sci-libs / htslib : C library for high-throughput sequencing data formats

sys-libs / zlib : Standard (de)compression library

Repository mirror & CI · gentoo
Merge updates from master
Michał Górny · gentoo
sci-biology/bcftools: Switch to PYTHON_MULTI_USEDEP API
Signed-off-by: Michał Górny <mgorny@gentoo.org>
Repository mirror & CI · gentoo
Merge updates from master
Martin Mokrejs · gentoo
sci-biology/bcftools: fix PYTHON_COMPAT, add missing matplotlib dep
From NEWS one can infer bcftools was at least from about 1.7 version python3 compatible. Moreover, at the moment the shenbang lines specifically call python3.6. So, adjust the PYTHON_COMPAT accordingly. matplotlib is used by the python scripts, unconditionally. Package-Manager: Portage-2.3.84, Repoman-2.3.20 Closes: https://github.com/gentoo/gentoo/pull/14421 Signed-off-by: Martin Mokrejs <mmokrejs@fold.natur.cuni.cz> Signed-off-by: David Seifert <soap@gentoo.org>
Repository mirror & CI · gentoo
Merge updates from master
David Seifert · gentoo
sci-biology/bcftools: Version bump to 1.9
Closes: https://bugs.gentoo.org/647714 Signed-off-by: David Seifert <soap@gentoo.org> Package-Manager: Portage-2.3.50, Repoman-2.3.11
David Seifert · gentoo
sci-biology/bcftools: Add 1.5 from sci overlay
Package-Manager: Portage-2.3.8, Repoman-2.3.3