Versions
v1.20 :: 0 :: gentoo
- Modified
- License
- MIT
- Keywords
- ~amd64 ~x86
v1.19 :: 0 :: gentoo
- Modified
- License
- MIT
- Keywords
- ~amd64 ~x86
USE flags
python_single_target
- python3_10
- Build for Python 3.10 only
- python3_11
- Build for Python 3.11 only
- python3_12
- Build for Python 3.12 only
Dependencies
dev-lang / perl : Larry Wall's Practical Extraction and Report Language
dev-lang / python : An interpreted, interactive, object-oriented programming language
dev-python / matplotlib : Pure python plotting library with matlab like syntax
sci-libs / htslib : C library for high-throughput sequencing data formats
Runtime Dependencies
dev-lang / perl : Larry Wall's Practical Extraction and Report Language
dev-lang / python : An interpreted, interactive, object-oriented programming language
dev-python / matplotlib : Pure python plotting library with matlab like syntax
sci-libs / htslib : C library for high-throughput sequencing data formats
Bugs
- 741540
- sci-biology/bcftools-1.10.2 - support for extra features is disabled without a USE flag
Change logs
- Repository mirror & CI · gentoo
Merge updates from master - David Seifert · gentoo
sci-biology/bcftools: add 1.20
Signed-off-by: David Seifert <soap@gentoo.org> - David Seifert · gentoo
sci-biology/bcftools: drop 1.17
Signed-off-by: David Seifert <soap@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - David Seifert · gentoo
sci-biology/bcftools: add 1.19
Signed-off-by: David Seifert <soap@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - David Seifert · gentoo
sci-biology/bcftools: drop 1.16
Signed-off-by: David Seifert <soap@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - David Seifert · gentoo
sci-biology/bcftools: add 1.17
Signed-off-by: David Seifert <soap@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - David Seifert · gentoo
sci-biology/bcftools: drop 1.15.1
Signed-off-by: David Seifert <soap@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - David Seifert · gentoo
*/*: remove py3.8 from PYTHON_COMPAT
Signed-off-by: David Seifert <soap@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - David Seifert · gentoo
sci-biology/bcftools: add 1.16
Signed-off-by: David Seifert <soap@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - David Seifert · gentoo
sci-biology/bcftools: drop 1.13, 1.15
Signed-off-by: David Seifert <soap@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - David Seifert · gentoo
sci-biology/bcftools: add 1.15.1
Signed-off-by: David Seifert <soap@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - David Seifert · gentoo
sci-biology/bcftools: add 1.15
Signed-off-by: David Seifert <soap@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - David Seifert · gentoo
sci-biology/bcftools: drop 1.10.2
Signed-off-by: David Seifert <soap@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - David Seifert · gentoo
sci-biology/bcftools: add 1.13
Signed-off-by: David Seifert <soap@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - David Seifert · gentoo
sci-biology/bcftools: PYTHON_MULTI_USEDEP -> PYTHON_USEDEP
Signed-off-by: David Seifert <soap@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - Michał Górny · gentoo
*/*: Remove obsolete values from PYTHON_COMPAT
Signed-off-by: Michał Górny <mgorny@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - David Seifert · gentoo
sci-biology/bcftools: Remove old
Package-Manager: Portage-3.0.1, Repoman-2.3.23 Signed-off-by: David Seifert <soap@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - David Seifert · gentoo
sci-biology/bcftools: Bump to version 1.10.2
Package-Manager: Portage-3.0.1, Repoman-2.3.23 Signed-off-by: David Seifert <soap@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - David Seifert · gentoo
sci-biology/bcftools: Add python 3.7
Package-Manager: Portage-2.3.96, Repoman-2.3.22 Signed-off-by: David Seifert <soap@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - Michał Górny · gentoo
sci-biology/bcftools: Switch to PYTHON_MULTI_USEDEP API
Signed-off-by: Michał Górny <mgorny@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - Martin Mokrejs · gentoo
sci-biology/bcftools: fix PYTHON_COMPAT, add missing matplotlib dep
From NEWS one can infer bcftools was at least from about 1.7 version python3 compatible. Moreover, at the moment the shenbang lines specifically call python3.6. So, adjust the PYTHON_COMPAT accordingly. matplotlib is used by the python scripts, unconditionally. Package-Manager: Portage-2.3.84, Repoman-2.3.20 Closes: https://github.com/gentoo/gentoo/pull/14421 Signed-off-by: Martin Mokrejs <mmokrejs@fold.natur.cuni.cz> Signed-off-by: David Seifert <soap@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - David Seifert · gentoo
sci-biology/bcftools: Version bump to 1.9
Closes: https://bugs.gentoo.org/647714 Signed-off-by: David Seifert <soap@gentoo.org> Package-Manager: Portage-2.3.50, Repoman-2.3.11 - David Seifert · gentoo
sci-biology/bcftools: Add 1.5 from sci overlay
Package-Manager: Portage-2.3.8, Repoman-2.3.3