sci-biology / bedtools

Tools for manipulation and analysis of BED, GFF/GTF, VCF, SAM/BAM file formats

Official package sites : https://bedtools.readthedocs.io/ ·

BEDTools: a flexible suite of utilities for comparing genomic features.

v2.26.0 :: 0 :: gentoo

Modified
License
GPL-2
Keywords
~amd64 ~x86
USE flags
test

General

test
Enable dependencies and/or preparations necessary to run tests (usually controlled by FEATURES=test but can be toggled independently)

dev-lang / python : An interpreted, interactive, object-oriented programming language

sci-biology / samtools : Utilities for analysing and manipulating the SAM/BAM alignment formats

sci-libs / htslib : C library for high-throughput sequencing data formats

sys-libs / zlib : Standard (de)compression library

Repository mirror & CI · gentoo
Merge updates from master
Michał Górny · gentoo
sci-biology/bedtools: Sort KEYWORDS
Signed-off-by: Michał Górny <mgorny@gentoo.org>
Repository mirror & CI · gentoo
Merge updates from master
Michał Górny · gentoo
*/*: Drop python3_4 from PYTHON_COMPAT
Closes: https://github.com/gentoo/gentoo/pull/11706 Signed-off-by: Michał Górny <mgorny@gentoo.org>
Pacho Ramos · gentoo
sci-biology/bedtools: Add support for newer python
Package-Manager: Portage-2.3.16, Repoman-2.3.6
Michał Górny · gentoo
sci-biology/bedtools: [QA] Move patch to a distfile
Closes: https://bugs.gentoo.org/620612
Robin H. Johnson · gentoo
Drop $Id$ per council decision in bug #611234.
Signed-off-by: Robin H. Johnson <robbat2@gentoo.org>
T. Malfatti · gentoo
media-libs/portaudio: Version bump
Pacho Ramos · gentoo
sci-biology/bedtools: This needs slot 0 of samtools (#597982)
Package-Manager: portage-2.3.2
David Seifert · gentoo
sci-biology/bedtools: Add missing RDEPEND on sys-libs/zlib
Package-Manager: portage-2.3.1
David Seifert · gentoo
sci-biology/bedtools: Remove old ebuilds
Package-Manager: portage-2.3.1
David Seifert · gentoo
sci-biology/bedtools: Version bump to 2.26.0
Gentoo-bug: 594994 * EAPI=6 * Make buildsystem output verbose * Inherit 'python-any-r1', due to python script * Add dependencies for test suite * Properly set CXX and CXXFLAGS Package-Manager: portage-2.3.1
Tobias Klausmann · gentoo
sci-biology/bedtools: Fixing HOMEPAGE move due to code.google.com shutdown
Package-Manager: portage-2.2.20.1
Justin Lecher · gentoo
Convert URIs for googlecode.com to https
Signed-off-by: Justin Lecher <jlec@gentoo.org>
Justin Lecher · gentoo
Enable https for all google URIs
Signed-off-by: Justin Lecher <jlec@gentoo.org>
Robin H. Johnson · gentoo
proj/gentoo: Initial commit
This commit represents a new era for Gentoo: Storing the gentoo-x86 tree in Git, as converted from CVS. This commit is the start of the NEW history. Any historical data is intended to be grafted onto this point. Creation process: 1. Take final CVS checkout snapshot 2. Remove ALL ChangeLog* files 3. Transform all Manifests to thin 4. Remove empty Manifests 5. Convert all stale $Header$/$Id$ CVS keywords to non-expanded Git $Id$ 5.1. Do not touch files with -kb/-ko keyword flags. Signed-off-by: Robin H. Johnson <robbat2@gentoo.org> X-Thanks: Alec Warner <antarus@gentoo.org> - did the GSoC 2006 migration tests X-Thanks: Robin H. Johnson <robbat2@gentoo.org> - infra guy, herding this project X-Thanks: Nguyen Thai Ngoc Duy <pclouds@gentoo.org> - Former Gentoo developer, wrote Git features for the migration X-Thanks: Brian Harring <ferringb@gentoo.org> - wrote much python to improve cvs2svn X-Thanks: Rich Freeman <rich0@gentoo.org> - validation scripts X-Thanks: Patrick Lauer <patrick@gentoo.org> - Gentoo dev, running new 2014 work in migration X-Thanks: Michał Górny <mgorny@gentoo.org> - scripts, QA, nagging X-Thanks: All of other Gentoo developers - many ideas and lots of paint on the bikeshed