{"bugs":[{"bugid":145580,"firstseen":"2016-06-16T16:08:01.789616","severity":"enhancement","status":"CONFIRMED","summary":"sci-biology\/bioperl: tests require several perl modules not in portage yet"},{"bugid":514916,"firstseen":"2016-06-16T16:08:01.789616","severity":"normal","status":"UNCONFIRMED","summary":"sci-biology\/bioperl should install executable tools from examples"},{"bugid":547018,"firstseen":"2016-06-16T16:08:01.789616","severity":"normal","status":"CONFIRMED","summary":"sci-biology\/bioperl-1.6.9 dev-perl\/Bio-ASN1-EntrezGene-1.91.0-r1 circular dependencies"},{"bugid":566466,"firstseen":"2016-06-16T16:08:01.789616","severity":"normal","status":"UNCONFIRMED","summary":"sci-biology\/bioperl: introduce USE=staden flag so that newer versions of io_lib can be installed"},{"bugid":818547,"firstseen":"2021-10-17T04:53:59.488505","severity":"normal","status":"CONFIRMED","summary":"dev-perl\/Bio-ASN1-EntrezGene-1.730.0[examples]: collides with sci-biology\/bioperl-1.6.9"}],"categories":[{"categoryid":450,"name":"dev-lang","summary":"The dev-lang category contains various programming language implementations and related tools."},{"categoryid":425,"name":"dev-perl","summary":"The dev-perl category contains libraries and utilities relevant to the Perl programming language."},{"categoryid":353,"name":"sci-biology","summary":"The sci-biology category contains software that can be used in biological and related scientific environments."},{"categoryid":396,"name":"virtual","summary":"The virtual category contains packages which satisfy virtual dependencies."}],"changelog":[{"authoremail":"repomirrorci@gentoo.org","authorname":"Repository mirror & CI","commitid":"f2979793991144637956e4225ce4d0235900c1a2","committime":"2023-06-09T15:16:56","packageid":42900,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"arthurzam@gentoo.org","authorname":"Arthur Zamarin","body":"Signed-off-by: Arthur Zamarin ","commitid":"0dda7c0b92c818b53c2ebbd76fa1bd986cdc0749","committime":"2023-06-03T14:45:29","packageid":42900,"repoid":1,"summary":"sci-biology\/bioperl: destabilize for ~x86"},{"authoremail":"repomirrorci@gentoo.org","authorname":"Repository mirror & CI","commitid":"6471433e11fd75f7ee15d047490dd3e9ebe69fa0","committime":"2022-03-19T17:19:10","packageid":42900,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"soap@gentoo.org","authorname":"David Seifert","body":"Bug: https:\/\/bugs.gentoo.org\/835362\nSigned-off-by: David Seifert ","commitid":"f157365a324f7b632066c8be831b6f072a72612d","committime":"2022-03-19T17:07:54","packageid":42900,"repoid":1,"summary":"sci-biology\/bioperl: update EAPI 5 -> 8"},{"authoremail":"repomirrorci@gentoo.org","authorname":"Repository mirror & CI","commitid":"70caacb091dcee3a5a207957798931db5b8ae35f","committime":"2021-04-03T15:50:37","packageid":42900,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"sam@gentoo.org","authorname":"Sam James","body":"Signed-off-by: Sam James ","commitid":"437383a0d253df55b0fb36747bf16f8f1f991bb6","committime":"2021-04-02T09:47:04","packageid":42900,"repoid":1,"summary":"sci-biology\/bioperl: fix variable references"},{"authoremail":"repomirrorci@gentoo.org","authorname":"Repository mirror & CI","commitid":"8b368eab2a3c4b4890f660827d21dd46d94e7256","committime":"2019-12-15T20:45:37","packageid":42900,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"mgorny@gentoo.org","authorname":"Michał Górny","body":"Signed-off-by: Michał Górny ","commitid":"bf101200a27bdd2f2bd075bf014c73ace1330bc3","committime":"2019-12-15T20:17:11","packageid":42900,"repoid":1,"summary":"sci-biology\/bioperl: Drop unmaintained -9999"},{"authoremail":"repo-qa-checks@gentoo.org","authorname":"Repository QA checks","commitid":"4e58a061195d348da47eb8cee0eb20297b79160f","committime":"2017-07-30T10:23:31","packageid":42900,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"david@hicks.id.au","authorname":"David Hicks","body":"Package-Manager: Portage-2.3.6, Repoman-2.3.3","commitid":"9e618b64239eab0ec27da772704aae5fc941ad35","committime":"2017-07-29T18:41:35","packageid":42900,"repoid":1,"summary":"sci-biology\/bioperl: use HTTPS for GitHub"},{"authoremail":"repo-qa-checks@gentoo.org","authorname":"Repository QA checks","commitid":"25093d6359f778b8d1052f66ba9e26fc29ded21a","committime":"2017-02-28T20:35:29","packageid":42900,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"robbat2@gentoo.org","authorname":"Robin H. Johnson","body":"Signed-off-by: Robin H. Johnson ","commitid":"61b861acd7b49083dab687e133f30f3331cb7480","committime":"2017-02-28T19:47:27","packageid":42900,"repoid":1,"summary":"Drop $Id$ per council decision in bug #611234."},{"authoremail":"repo-qa-checks@gentoo.org","authorname":"Repository QA checks","commitid":"04aa906572476897d45213a0cb83652e2dd2c0fc","committime":"2016-04-29T19:42:09","packageid":42900,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"kentfredric@gmail.com","authorname":"Kent Fredric","body":"Package-Manager: portage-2.2.28\nRepoMan-Options: --include-arches=\"alpha amd64 amd64-fbsd arm arm64 hppa ia64 m68k mips nios2 ppc ppc64 riscv s390 sh sparc sparc-fbsd x86 x86-fbsd\"","commitid":"1c68f77fd98014346ca2cbeea4d468fc187fdd3e","committime":"2016-04-26T13:10:57","packageid":42900,"repoid":1,"summary":"sci-biology\/bioperl: Fix dependency on dev-perl\/YAML"},{"authoremail":"repo-qa-checks@gentoo.org","authorname":"Repository QA checks","commitid":"1da2cf91af0df6169102882c5ace38425718c2b9","committime":"2016-04-15T20:02:36","packageid":42900,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"kentfredric@gmail.com","authorname":"Kent Fredric","body":"Package-Manager: portage-2.2.28\nRepoMan-Options: --include-arches=\"amd64 amd64-fbsd arm arm64 mips nios2 ppc ppc64 riscv s390 sh sparc-fbsd\"","commitid":"c518e98534b05b3315726bfcd184b9549407d605","committime":"2016-04-12T15:55:14","packageid":42900,"repoid":1,"summary":"sci-biology\/bioperl: Fix dependency on dev-perl\/Set-Scalar"},{"authoremail":"repo-qa-checks@gentoo.org","authorname":"Repository QA checks","commitid":"945f0d2a26da4f944fd06ad6a874f69d37ce1e06","committime":"2015-08-09T09:26:46","packageid":42900,"repoid":1,"summary":"2015-08-09 09:26:21 UTC"},{"authoremail":"robbat2@gentoo.org","authorname":"Robin H. Johnson","body":"This commit represents a new era for Gentoo:\nStoring the gentoo-x86 tree in Git, as converted from CVS.\n\nThis commit is the start of the NEW history.\nAny historical data is intended to be grafted onto this point.\n\nCreation process:\n1. Take final CVS checkout snapshot\n2. Remove ALL ChangeLog* files\n3. Transform all Manifests to thin\n4. Remove empty Manifests\n5. Convert all stale $Header$\/$Id$ CVS keywords to non-expanded Git $Id$\n5.1. Do not touch files with -kb\/-ko keyword flags.\n\nSigned-off-by: Robin H. Johnson \nX-Thanks: Alec Warner - did the GSoC 2006 migration tests\nX-Thanks: Robin H. Johnson - infra guy, herding this project\nX-Thanks: Nguyen Thai Ngoc Duy - Former Gentoo developer, wrote Git features for the migration\nX-Thanks: Brian Harring - wrote much python to improve cvs2svn\nX-Thanks: Rich Freeman - validation scripts\nX-Thanks: Patrick Lauer - Gentoo dev, running new 2014 work in migration\nX-Thanks: Michał Górny - scripts, QA, nagging\nX-Thanks: All of other Gentoo developers - many ideas and lots of paint on the bikeshed","commitid":"56bd759df1d0c750a065b8c845e93d5dfa6b549d","committime":"2015-08-08T20:49:04","packageid":42900,"repoid":1,"summary":"proj\/gentoo: Initial commit"},{"authoremail":"repo-qa-checks@gentoo.org","authorname":"Repository QA checks","commitid":"a637bd65b7fef8e2be4e7fc6e9097479372e0e2e","committime":"2015-06-19T16:38:33","packageid":42900,"repoid":1,"summary":"2015-06-19 16:35:30 UTC"}],"dependencies":[{"block":false,"categoryid":425,"description":"Collection of Perl Modules for the WWW","ebuildids":[743617],"firstseen":"2010-05-04T00:54:45.661860","maintainer":"perl@gentoo.org","maintainername":"Gentoo Perl Project","name":"libwww-perl","packageid":41849},{"block":false,"categoryid":425,"description":"sort lexically, but sort numeral parts numerically","ebuildids":[743617],"firstseen":"2010-05-04T00:54:45.661860","maintainer":"perl@gentoo.org","maintainername":"Gentoo Perl Project","name":"Sort-Naturally","packageid":41924,"summary":"This module exports two functions, nsort and ncmp; they are used in implementing my idea of a \"natural sorting\" algorithm. Under natural sorting, numeric substrings are compared numerically, and other word-characters are compared lexically."},{"block":false,"categoryid":425,"description":"A Perl module for an DOM Level 1 compliant interface","ebuildids":[743617],"firstseen":"2010-05-04T00:54:45.661860","maintainer":"perl@gentoo.org","maintainername":"Gentoo Perl Project","name":"XML-DOM","packageid":42052},{"block":false,"categoryid":425,"description":"Interface to Thomas Boutell's gd library","ebuildids":[743617],"firstseen":"2010-05-04T00:54:45.661860","maintainer":"perl@gentoo.org","maintainername":"Gentoo Perl Project","name":"GD","packageid":42110},{"block":false,"categoryid":425,"description":"An XPath Perl Module","ebuildids":[743617],"firstseen":"2010-05-04T00:54:45.661860","maintainer":"perl@gentoo.org","maintainername":"Gentoo Perl Project","name":"XML-XPath","packageid":42373},{"block":false,"categoryid":425,"description":"A perl module for parsing XML documents","ebuildids":[743617],"firstseen":"2010-05-04T00:54:45.661860","maintainer":"perl@gentoo.org","maintainername":"Gentoo Perl Project","name":"XML-Parser","packageid":43714},{"block":false,"categoryid":425,"description":"Perl module for using and building Perl SAX2 XML parsers, filters, and drivers","ebuildids":[743617],"firstseen":"2010-05-04T00:54:45.661860","maintainer":"perl@gentoo.org","maintainername":"Gentoo Perl Project","name":"XML-SAX","packageid":43906},{"block":false,"categoryid":425,"description":"Visualize your data in Scalable Vector Graphics (SVG) format","ebuildids":[743617],"firstseen":"2010-05-04T00:54:45.661860","maintainer":"perl@gentoo.org","maintainername":"Gentoo Perl Project","name":"SVG-Graph","packageid":44223},{"block":false,"categoryid":450,"description":"Larry Wall's Practical Extraction and Report Language","ebuildids":[743617],"firstseen":"2010-05-04T00:54:45.661860","maintainer":"perl@gentoo.org","maintainername":"Gentoo Perl Project","name":"perl","packageid":44582},{"block":false,"categoryid":425,"description":"Provide the missing functionality from List::Util","ebuildids":[743617],"firstseen":"2010-05-04T00:54:45.661860","maintainer":"perl@gentoo.org","maintainername":"Gentoo Perl Project","name":"List-MoreUtils","packageid":45236},{"block":false,"categoryid":425,"description":"Binary Data Conversion using C Types","ebuildids":[743617],"firstseen":"2010-05-04T00:54:45.661860","maintainer":"perl@gentoo.org","maintainername":"Gentoo Perl Project","name":"Convert-Binary-C","packageid":45248},{"block":false,"categoryid":425,"description":"An object that may be used to construct a block of text in PostScript","ebuildids":[743617],"firstseen":"2010-05-04T00:54:45.661860","maintainer":"sci@gentoo.org","maintainername":"Gentoo Science Project","name":"PostScript","packageid":46155},{"block":false,"categoryid":425,"description":"Munkres solution to classical Assignment problem","ebuildids":[743617],"firstseen":"2010-05-04T00:54:45.661860","maintainer":"sci@gentoo.org","maintainername":"Gentoo Science Project","name":"Algorithm-Munkres","packageid":46246},{"block":false,"categoryid":425,"description":"Structured Tags datastructures","ebuildids":[743617],"firstseen":"2010-05-04T00:54:45.661860","maintainer":"sci@gentoo.org","maintainername":"Gentoo Science Project","name":"Data-Stag","packageid":46312},{"block":false,"categoryid":425,"description":"Lightweight interface to the SOAP protocol both on client and server side","ebuildids":[743617],"firstseen":"2010-05-04T00:54:45.661860","maintainer":"perl@gentoo.org","maintainername":"Gentoo Perl Project","name":"SOAP-Lite","packageid":47254},{"block":false,"categoryid":425,"description":"Random Number Generators","ebuildids":[743617],"firstseen":"2010-05-04T00:54:45.661860","maintainer":"sci@gentoo.org","maintainername":"Gentoo Science Project","name":"Math-Random","packageid":47402},{"block":false,"categoryid":425,"description":"Perl extension to add XPath support to XML::DOM, using XML::XPath engine","ebuildids":[743617],"firstseen":"2010-05-04T00:54:45.661860","maintainer":"sci@gentoo.org","maintainername":"Gentoo Science Project","name":"XML-DOM-XPath","packageid":47586},{"block":false,"categoryid":425,"description":"Self Contained RDBMS in a DBI Driver","ebuildids":[743617],"firstseen":"2010-05-04T00:54:45.661860","maintainer":"perl@gentoo.org","maintainername":"Gentoo Perl Project","name":"DBD-SQLite","packageid":48170},{"block":false,"categoryid":425,"description":"XML Writer Perl Module","ebuildids":[743617],"firstseen":"2010-05-04T00:54:45.661860","maintainer":"perl@gentoo.org","maintainername":"Gentoo Perl Project","name":"XML-Writer","packageid":49239},{"block":false,"categoryid":425,"description":"Parse HTML documents","ebuildids":[743617],"firstseen":"2010-05-04T00:54:45.661860","maintainer":"perl@gentoo.org","maintainername":"Gentoo Perl Project","name":"HTML-Parser","packageid":49311},{"block":false,"categoryid":396,"description":"Virtual for Storable","ebuildids":[743617],"firstseen":"2010-05-04T00:54:45.661860","maintainer":"perl@gentoo.org","maintainername":"Gentoo Perl Project","name":"perl-Storable","packageid":49349},{"block":false,"categoryid":425,"description":"Uniform Resource Identifiers (absolute and relative)","ebuildids":[743617],"firstseen":"2010-05-04T00:54:45.661860","maintainer":"perl@gentoo.org","maintainername":"Gentoo Perl Project","name":"URI","packageid":51799},{"block":false,"categoryid":425,"description":"Interface to AT&T's GraphViz","ebuildids":[743617],"firstseen":"2010-05-04T00:54:45.661860","maintainer":"perl@gentoo.org","maintainername":"Gentoo Perl Project","name":"GraphViz","packageid":51897},{"block":false,"categoryid":425,"description":"Process huge XML documents in tree mode","ebuildids":[743617],"firstseen":"2010-05-04T00:54:45.661860","maintainer":"perl@gentoo.org","maintainername":"Gentoo Perl Project","name":"XML-Twig","packageid":52189},{"block":false,"categoryid":425,"description":"Perl extension for comparing arrays","ebuildids":[743617],"firstseen":"2010-05-04T00:54:45.661860","maintainer":"perl@gentoo.org","maintainername":"Gentoo Perl Project","name":"Array-Compare","packageid":52732},{"block":false,"categoryid":425,"description":"Recursively copy Perl datatypes","ebuildids":[743617],"firstseen":"2010-05-04T00:54:45.661860","maintainer":"perl@gentoo.org","maintainername":"Gentoo Perl Project","name":"Clone","packageid":53112},{"block":false,"categoryid":425,"description":"Regular expression-based Perl Parser for NCBI Entrez Gene","ebuildids":[743617],"firstseen":"2010-05-04T00:54:45.661860","maintainer":"sci@gentoo.org","maintainername":"Gentoo Science Project","name":"Bio-ASN1-EntrezGene","packageid":53412},{"block":false,"categoryid":425,"description":"Perl extension for generating Scalable Vector Graphics (SVG) documents","ebuildids":[743617],"firstseen":"2010-05-04T00:54:45.661860","maintainer":"perl@gentoo.org","maintainername":"Gentoo Perl Project","name":"SVG","packageid":53821},{"block":false,"categoryid":425,"description":"Data structure and ops for directed graphs","ebuildids":[743617],"firstseen":"2010-05-04T00:54:45.661860","maintainer":"perl@gentoo.org","maintainername":"Gentoo Perl Project","name":"Graph","packageid":54204},{"block":false,"categoryid":425,"description":"An API for simple XML files","ebuildids":[743617],"firstseen":"2010-05-04T00:54:45.661860","maintainer":"perl@gentoo.org","maintainername":"Gentoo Perl Project","name":"XML-Simple","packageid":55080},{"block":false,"categoryid":425,"description":"Read information from an Excel file","ebuildids":[743617],"firstseen":"2010-05-04T00:54:45.661860","maintainer":"perl@gentoo.org","maintainername":"Gentoo Perl Project","name":"Spreadsheet-ParseExcel","packageid":55267},{"block":false,"categoryid":425,"description":"Scalar set operations","ebuildids":[743617],"firstseen":"2016-04-16T13:40:36.211046","maintainer":"perl@gentoo.org","maintainername":"Gentoo Perl Project","name":"Set-Scalar","packageid":65324},{"block":false,"categoryid":425,"description":"YAML Ain't Markup Language (tm)","ebuildids":[743617],"firstseen":"2016-04-30T13:40:28.050618","maintainer":"perl@gentoo.org","maintainername":"Gentoo Perl Project","name":"YAML","packageid":65387}],"depending":[{"block":false,"categoryid":425,"description":"Interface to Distributed Annotation System","ebuildids":[763729],"firstseen":"2010-05-04T00:54:45.661860","maintainer":"sci@gentoo.org","maintainername":"Gentoo Science Project","name":"Bio-Das","packageid":42102},{"block":false,"categoryid":353,"description":"Perl wrapper modules for key bioinformatics applications","ebuildids":[743619,743619],"firstseen":"2010-05-04T00:54:45.661860","maintainer":"sci-biology@gentoo.org","maintainername":"Gentoo Biology Project","name":"bioperl-run","packageid":45447},{"block":false,"categoryid":425,"description":"Generate images from Bio::Seq objects for visualization purposes","ebuildids":[763730,763730],"firstseen":"2010-05-04T00:54:45.661860","maintainer":"sci@gentoo.org","maintainername":"Gentoo Science Project","name":"Bio-Graphics","packageid":45732},{"block":false,"categoryid":353,"description":"Perl tools for bioinformatics - Perl API that accesses the BioSQL schema","ebuildids":[754785,754785],"firstseen":"2010-05-04T00:54:45.661860","maintainer":"sci-biology@gentoo.org","maintainername":"Gentoo Biology Project","name":"bioperl-db","packageid":52408},{"block":false,"categoryid":353,"description":"Perl tools for bioinformatics - Analysis of protein-protein interaction networks","ebuildids":[743618,743618],"firstseen":"2010-05-04T00:54:45.661860","maintainer":"sci-biology@gentoo.org","maintainername":"Gentoo Biology Project","name":"bioperl-network","packageid":53008},{"block":false,"categoryid":425,"description":"Regular expression-based Perl Parser for NCBI Entrez Gene","ebuildids":[709866],"firstseen":"2010-05-04T00:54:45.661860","maintainer":"sci@gentoo.org","maintainername":"Gentoo Science Project","name":"Bio-ASN1-EntrezGene","packageid":53412},{"block":false,"categoryid":425,"description":"Perl bindings for sci-libs\/htslib","ebuildids":[827156],"firstseen":"2018-04-26T12:37:48.334952","name":"Bio-DB-HTS","packageid":69100}],"ebuilds":[{"archs":["amd64","~x86"],"ebuildid":743617,"firstseen":"2022-03-19T17:35:02.155800","license":"|| ( Artistic GPL-1+ )","moddate":"2025-02-16T19:09:34","packageid":42900,"repoid":1,"slot":"0","uses":["db","graphviz","minimal","network","perl_features_debug","perl_features_ithreads","perl_features_quadmath","run","sqlite","test"],"version":"1.6.9-r1"}],"masks":[],"package":{"categoryid":353,"description":"Perl tools for bioinformatics - Core modules","firstseen":"2010-05-04T00:54:45.661860","maintainer":"sci-biology@gentoo.org","maintainername":"Gentoo Biology Project","name":"bioperl","packageid":42900},"rdependencies":[{"block":false,"categoryid":425,"description":"Collection of Perl Modules for the WWW","ebuildids":[743617],"firstseen":"2010-05-04T00:54:45.661860","maintainer":"perl@gentoo.org","maintainername":"Gentoo Perl Project","name":"libwww-perl","packageid":41849},{"block":false,"categoryid":425,"description":"sort lexically, but sort numeral parts numerically","ebuildids":[743617],"firstseen":"2010-05-04T00:54:45.661860","maintainer":"perl@gentoo.org","maintainername":"Gentoo Perl Project","name":"Sort-Naturally","packageid":41924,"summary":"This module exports two functions, nsort and ncmp; they are used in implementing my idea of a \"natural sorting\" algorithm. Under natural sorting, numeric substrings are compared numerically, and other word-characters are compared lexically."},{"block":false,"categoryid":425,"description":"A Perl module for an DOM Level 1 compliant interface","ebuildids":[743617],"firstseen":"2010-05-04T00:54:45.661860","maintainer":"perl@gentoo.org","maintainername":"Gentoo Perl Project","name":"XML-DOM","packageid":42052},{"block":false,"categoryid":425,"description":"Interface to Thomas Boutell's gd library","ebuildids":[743617],"firstseen":"2010-05-04T00:54:45.661860","maintainer":"perl@gentoo.org","maintainername":"Gentoo Perl Project","name":"GD","packageid":42110},{"block":false,"categoryid":425,"description":"An XPath Perl Module","ebuildids":[743617],"firstseen":"2010-05-04T00:54:45.661860","maintainer":"perl@gentoo.org","maintainername":"Gentoo Perl Project","name":"XML-XPath","packageid":42373},{"block":false,"categoryid":425,"description":"A perl module for parsing XML documents","ebuildids":[743617],"firstseen":"2010-05-04T00:54:45.661860","maintainer":"perl@gentoo.org","maintainername":"Gentoo Perl Project","name":"XML-Parser","packageid":43714},{"block":false,"categoryid":425,"description":"Perl module for using and building Perl SAX2 XML parsers, filters, and drivers","ebuildids":[743617],"firstseen":"2010-05-04T00:54:45.661860","maintainer":"perl@gentoo.org","maintainername":"Gentoo Perl Project","name":"XML-SAX","packageid":43906},{"block":false,"categoryid":425,"description":"Visualize your data in Scalable Vector Graphics (SVG) format","ebuildids":[743617],"firstseen":"2010-05-04T00:54:45.661860","maintainer":"perl@gentoo.org","maintainername":"Gentoo Perl Project","name":"SVG-Graph","packageid":44223},{"block":false,"categoryid":450,"description":"Larry Wall's Practical Extraction and Report Language","ebuildids":[743617,743617],"firstseen":"2010-05-04T00:54:45.661860","maintainer":"perl@gentoo.org","maintainername":"Gentoo Perl Project","name":"perl","packageid":44582},{"block":false,"categoryid":425,"description":"Provide the missing functionality from List::Util","ebuildids":[743617],"firstseen":"2010-05-04T00:54:45.661860","maintainer":"perl@gentoo.org","maintainername":"Gentoo Perl Project","name":"List-MoreUtils","packageid":45236},{"block":false,"categoryid":425,"description":"Binary Data Conversion using C Types","ebuildids":[743617],"firstseen":"2010-05-04T00:54:45.661860","maintainer":"perl@gentoo.org","maintainername":"Gentoo Perl Project","name":"Convert-Binary-C","packageid":45248},{"block":false,"categoryid":425,"description":"An object that may be used to construct a block of text in PostScript","ebuildids":[743617],"firstseen":"2010-05-04T00:54:45.661860","maintainer":"sci@gentoo.org","maintainername":"Gentoo Science Project","name":"PostScript","packageid":46155},{"block":false,"categoryid":425,"description":"Munkres solution to classical Assignment problem","ebuildids":[743617],"firstseen":"2010-05-04T00:54:45.661860","maintainer":"sci@gentoo.org","maintainername":"Gentoo Science Project","name":"Algorithm-Munkres","packageid":46246},{"block":false,"categoryid":425,"description":"Structured Tags datastructures","ebuildids":[743617],"firstseen":"2010-05-04T00:54:45.661860","maintainer":"sci@gentoo.org","maintainername":"Gentoo Science Project","name":"Data-Stag","packageid":46312},{"block":false,"categoryid":425,"description":"Lightweight interface to the SOAP protocol both on client and server side","ebuildids":[743617],"firstseen":"2010-05-04T00:54:45.661860","maintainer":"perl@gentoo.org","maintainername":"Gentoo Perl Project","name":"SOAP-Lite","packageid":47254},{"block":false,"categoryid":425,"description":"Random Number Generators","ebuildids":[743617],"firstseen":"2010-05-04T00:54:45.661860","maintainer":"sci@gentoo.org","maintainername":"Gentoo Science Project","name":"Math-Random","packageid":47402},{"block":false,"categoryid":425,"description":"Perl extension to add XPath support to XML::DOM, using XML::XPath engine","ebuildids":[743617],"firstseen":"2010-05-04T00:54:45.661860","maintainer":"sci@gentoo.org","maintainername":"Gentoo Science Project","name":"XML-DOM-XPath","packageid":47586},{"block":false,"categoryid":425,"description":"Self Contained RDBMS in a DBI Driver","ebuildids":[743617],"firstseen":"2010-05-04T00:54:45.661860","maintainer":"perl@gentoo.org","maintainername":"Gentoo Perl Project","name":"DBD-SQLite","packageid":48170},{"block":false,"categoryid":425,"description":"XML Writer Perl Module","ebuildids":[743617],"firstseen":"2010-05-04T00:54:45.661860","maintainer":"perl@gentoo.org","maintainername":"Gentoo Perl Project","name":"XML-Writer","packageid":49239},{"block":false,"categoryid":425,"description":"Parse HTML documents","ebuildids":[743617],"firstseen":"2010-05-04T00:54:45.661860","maintainer":"perl@gentoo.org","maintainername":"Gentoo Perl Project","name":"HTML-Parser","packageid":49311},{"block":false,"categoryid":396,"description":"Virtual for Storable","ebuildids":[743617],"firstseen":"2010-05-04T00:54:45.661860","maintainer":"perl@gentoo.org","maintainername":"Gentoo Perl Project","name":"perl-Storable","packageid":49349},{"block":false,"categoryid":425,"description":"Uniform Resource Identifiers (absolute and relative)","ebuildids":[743617],"firstseen":"2010-05-04T00:54:45.661860","maintainer":"perl@gentoo.org","maintainername":"Gentoo Perl Project","name":"URI","packageid":51799},{"block":false,"categoryid":425,"description":"Interface to AT&T's GraphViz","ebuildids":[743617],"firstseen":"2010-05-04T00:54:45.661860","maintainer":"perl@gentoo.org","maintainername":"Gentoo Perl Project","name":"GraphViz","packageid":51897},{"block":false,"categoryid":425,"description":"Process huge XML documents in tree mode","ebuildids":[743617],"firstseen":"2010-05-04T00:54:45.661860","maintainer":"perl@gentoo.org","maintainername":"Gentoo Perl Project","name":"XML-Twig","packageid":52189},{"block":false,"categoryid":425,"description":"Perl extension for comparing arrays","ebuildids":[743617],"firstseen":"2010-05-04T00:54:45.661860","maintainer":"perl@gentoo.org","maintainername":"Gentoo Perl Project","name":"Array-Compare","packageid":52732},{"block":false,"categoryid":425,"description":"Recursively copy Perl datatypes","ebuildids":[743617],"firstseen":"2010-05-04T00:54:45.661860","maintainer":"perl@gentoo.org","maintainername":"Gentoo Perl Project","name":"Clone","packageid":53112},{"block":false,"categoryid":425,"description":"Regular expression-based Perl Parser for NCBI Entrez Gene","ebuildids":[743617],"firstseen":"2010-05-04T00:54:45.661860","maintainer":"sci@gentoo.org","maintainername":"Gentoo Science Project","name":"Bio-ASN1-EntrezGene","packageid":53412},{"block":false,"categoryid":425,"description":"Perl extension for generating Scalable Vector Graphics (SVG) documents","ebuildids":[743617],"firstseen":"2010-05-04T00:54:45.661860","maintainer":"perl@gentoo.org","maintainername":"Gentoo Perl Project","name":"SVG","packageid":53821},{"block":false,"categoryid":425,"description":"Data structure and ops for directed graphs","ebuildids":[743617],"firstseen":"2010-05-04T00:54:45.661860","maintainer":"perl@gentoo.org","maintainername":"Gentoo Perl Project","name":"Graph","packageid":54204},{"block":false,"categoryid":425,"description":"An API for simple XML files","ebuildids":[743617],"firstseen":"2010-05-04T00:54:45.661860","maintainer":"perl@gentoo.org","maintainername":"Gentoo Perl Project","name":"XML-Simple","packageid":55080},{"block":false,"categoryid":425,"description":"Read information from an Excel file","ebuildids":[743617],"firstseen":"2010-05-04T00:54:45.661860","maintainer":"perl@gentoo.org","maintainername":"Gentoo Perl Project","name":"Spreadsheet-ParseExcel","packageid":55267},{"block":false,"categoryid":425,"description":"Scalar set operations","ebuildids":[743617],"firstseen":"2016-04-16T13:40:36.211046","maintainer":"perl@gentoo.org","maintainername":"Gentoo Perl Project","name":"Set-Scalar","packageid":65324},{"block":false,"categoryid":425,"description":"YAML Ain't Markup Language (tm)","ebuildids":[743617],"firstseen":"2016-04-30T13:40:28.050618","maintainer":"perl@gentoo.org","maintainername":"Gentoo Perl Project","name":"YAML","packageid":65387}],"repos":[{"branch":"master","lastcommit":"e565948c746cc6ad228413ae2e2513f8a8e5978f","name":"gentoo","path":"\/usr\/portage","repoid":1,"upstream":"origin"}],"tracked":false,"urls":["http:\/\/www.bioperl.org\/"],"uses":[{"defaultflag":true,"description":"Install sci-biology\/bioperl-run","isdefault":true,"packageid":42900,"use":"db"},{"description":"Add support for the Graphviz library","isdefault":false,"use":"graphviz"},{"description":"Install a very minimal build (disables, for example, plugins, fonts, most drivers, non-critical features)","isdefault":false,"use":"minimal"},{"defaultflag":true,"description":"Install sci-biology\/bioperl-run","isdefault":true,"packageid":42900,"use":"network"},{"defaultflag":true,"description":"Install sci-biology\/bioperl-run","isdefault":true,"packageid":42900,"use":"run"},{"description":"Add support for sqlite - embedded sql database","isdefault":false,"use":"sqlite"},{"description":"Enable dependencies and\/or preparations necessary to run tests (usually controlled by FEATURES=test but can be toggled independently)","isdefault":false,"use":"test"},{"description":"PERL_FEATURES setting enabling internal debug support in Perl","group":"perl_features","isdefault":false,"use":"debug"},{"description":"PERL_FEATURES setting enabling interpreter level threads, has some compatibility problems","group":"perl_features","isdefault":false,"use":"ithreads"},{"description":"PERL_FEATURES setting enabling 128bit floating point arithmetic via libquadmath","group":"perl_features","isdefault":false,"use":"quadmath"}]}