{"bugs":[],"categories":[{"categoryid":450,"name":"dev-lang","summary":"The dev-lang category contains various programming language implementations and related tools."},{"categoryid":425,"name":"dev-perl","summary":"The dev-perl category contains libraries and utilities relevant to the Perl programming language."},{"categoryid":353,"name":"sci-biology","summary":"The sci-biology category contains software that can be used in biological and related scientific environments."},{"categoryid":396,"name":"virtual","summary":"The virtual category contains packages which satisfy virtual dependencies."}],"changelog":[{"authoremail":"repomirrorci@gentoo.org","authorname":"Repository mirror & CI","commitid":"f2979793991144637956e4225ce4d0235900c1a2","committime":"2023-06-09T15:16:56","packageid":52408,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"arthurzam@gentoo.org","authorname":"Arthur Zamarin","body":"Signed-off-by: Arthur Zamarin ","commitid":"848d9f41fc2cabaa9edfe91220d55de6d96aac8f","committime":"2023-06-03T14:45:32","packageid":52408,"repoid":1,"summary":"sci-biology\/bioperl-db: destabilize for ~x86"},{"authoremail":"repomirrorci@gentoo.org","authorname":"Repository mirror & CI","commitid":"0e11802e9aa4605270420a6b6237f8753d0ffd35","committime":"2022-07-02T15:46:20","packageid":52408,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"soap@gentoo.org","authorname":"David Seifert","body":"Signed-off-by: David Seifert ","commitid":"e78e96662afd2a985c7ddca38f7994f0ebd3d6db","committime":"2022-07-02T15:40:01","packageid":52408,"repoid":1,"summary":"sci-biology\/bioperl-db: update EAPI 6 -> 8"},{"authoremail":"repomirrorci@gentoo.org","authorname":"Repository mirror & CI","commitid":"13c29d76c4408b9030d392d60a579e61d7e64533","committime":"2021-08-19T12:51:27","packageid":52408,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"asturm@gentoo.org","authorname":"Andreas Sturmlechner","body":"Closes: https:\/\/bugs.gentoo.org\/808198\nPackage-Manager: Portage-3.0.22, Repoman-3.0.3\nSigned-off-by: Andreas Sturmlechner ","commitid":"ce0835b5dc6b6a5cb6e56160b536d9974cc38dd3","committime":"2021-08-19T12:43:31","packageid":52408,"repoid":1,"summary":"sci-biology\/bioperl-db: Drop 1.6.9 (r0), EAPI5--"},{"authoremail":"repomirrorci@gentoo.org","authorname":"Repository mirror & CI","commitid":"49e8ec270a5562ef5ad926a0fd3e0c0569297873","committime":"2021-08-19T01:36:37","packageid":52408,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"ago@gentoo.org","authorname":"Agostino Sarubbo","body":"Package-Manager: Portage-3.0.20, Repoman-3.0.2\nRepoMan-Options: --include-arches=\"x86\"\nSigned-off-by: Agostino Sarubbo ","commitid":"a2c2ac5583c3dd790d5a92f8b2a01d8a8e54607a","committime":"2021-08-19T01:28:59","packageid":52408,"repoid":1,"summary":"sci-biology\/bioperl-db: x86 stable wrt bug #808198"},{"authoremail":"repomirrorci@gentoo.org","authorname":"Repository mirror & CI","commitid":"c95ddf37f826d4f30974b83c1c57c69e8fd89516","committime":"2021-08-16T05:28:25","packageid":52408,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"ago@gentoo.org","authorname":"Agostino Sarubbo","body":"Package-Manager: Portage-3.0.20, Repoman-3.0.2\nRepoMan-Options: --include-arches=\"amd64\"\nSigned-off-by: Agostino Sarubbo ","commitid":"f3494effe75929705847171961cf2121af290616","committime":"2021-08-16T05:12:23","packageid":52408,"repoid":1,"summary":"sci-biology\/bioperl-db: amd64 stable wrt bug #808198"},{"authoremail":"repomirrorci@gentoo.org","authorname":"Repository mirror & CI","commitid":"e65ebacd3eec5594c8c7a788ab21f5794d145e98","committime":"2021-03-20T19:35:59","packageid":52408,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"whissi@gentoo.org","authorname":"Thomas Deutschmann","body":"Since commit 755be857e3051, mysql_install_db location has changed.\n\nPackage-Manager: Portage-3.0.17, Repoman-3.0.2\nSigned-off-by: Thomas Deutschmann ","commitid":"fd89a51f0151103d6bac5f165e06c78eaa4d81b4","committime":"2021-03-20T19:16:20","packageid":52408,"repoid":1,"summary":"sci-biology\/bioperl-db: adjust mysql_install_db location"},{"authoremail":"repomirrorci@gentoo.org","authorname":"Repository mirror & CI","commitid":"8b368eab2a3c4b4890f660827d21dd46d94e7256","committime":"2019-12-15T20:45:37","packageid":52408,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"mgorny@gentoo.org","authorname":"Michał Górny","body":"Signed-off-by: Michał Górny ","commitid":"f92c72f76333e8ddc50c4aeb75a087c2c9b387e2","committime":"2019-12-15T20:17:38","packageid":52408,"repoid":1,"summary":"sci-biology\/bioperl-db: Drop unmaintained -9999"},{"authoremail":"repo-qa-checks@gentoo.org","authorname":"Repository QA checks","commitid":"4e58a061195d348da47eb8cee0eb20297b79160f","committime":"2017-07-30T10:23:31","packageid":52408,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"david@hicks.id.au","authorname":"David Hicks","body":"Package-Manager: Portage-2.3.6, Repoman-2.3.3","commitid":"4c095b1bd582c473eedc217da56ff27013a4ae24","committime":"2017-07-29T18:42:37","packageid":52408,"repoid":1,"summary":"sci-biology\/bioperl-db: use HTTPS for GitHub"},{"authoremail":"repo-qa-checks@gentoo.org","authorname":"Repository QA checks","commitid":"a5cd7d67553ec87ab6df6ea715b71973c5972a63","committime":"2017-07-18T04:46:11","packageid":52408,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"kentnl@gentoo.org","authorname":"Kent Fredric","body":"I've tried an excessive amount to get tests working here. But they\nstill need a lot of love. The work I've done so far only gets\na mysql test instance up, ( and then, only tested with mariadb )\n\nSomebody needs to work out what's missing to provision the databases\nthat the tests use.\n\nSomebody needs to add support for initializing the other kinds of\ndatabase.\n\nAny help here encouraged, but disabling non-functioning tests\nis the best we can do for now.\n\nPackage-Manager: Portage-2.3.6, Repoman-2.3.2","commitid":"5ee7db5997fa620007d8d66a1a6dd0cead89a272","committime":"2017-07-18T04:37:22","packageid":52408,"repoid":1,"summary":"sci-biology\/bioperl-db: Restrict tests re bug #421701"},{"authoremail":"kentnl@gentoo.org","authorname":"Kent Fredric","body":"- Test infa overhauled slightly\n- EAPI6ified\n- More test changes planned\n- -r1 bump mostly for double-safety around EAPI6 changes\n\nPackage-Manager: Portage-2.3.6, Repoman-2.3.2","commitid":"c16e51d89ade3ee46c780185a2aad20555ab154b","committime":"2017-07-17T23:55:34","packageid":52408,"repoid":1,"summary":"sci-biology\/bioperl-db: EAPI6\/-R1 Bump"},{"authoremail":"kentnl@gentoo.org","authorname":"Kent Fredric","body":"Bundled versions of CPAN modules in t\/ lacked all their dependencies\nbeing declared, leading to bundled copy of Test::Warn fail when\nArray::Compare was not installed.\n\nAdditionally, parts didn't play nice together and warned about old\nversions of things.\n\nThis is fixed buy uncermoniously removing all bundled test libraries\nand marking them as dependencies instead.\n\nPackage-Manager: Portage-2.3.6, Repoman-2.3.2","commitid":"04ab405b6e126de98c59e047c4e597a974a73956","committime":"2017-07-17T22:06:04","packageid":52408,"repoid":1,"summary":"sci-biology\/bioperl-db: Fix broken test dependencies"},{"authoremail":"repo-qa-checks@gentoo.org","authorname":"Repository QA checks","commitid":"25093d6359f778b8d1052f66ba9e26fc29ded21a","committime":"2017-02-28T20:35:29","packageid":52408,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"robbat2@gentoo.org","authorname":"Robin H. Johnson","body":"Signed-off-by: Robin H. Johnson ","commitid":"61b861acd7b49083dab687e133f30f3331cb7480","committime":"2017-02-28T19:47:27","packageid":52408,"repoid":1,"summary":"Drop $Id$ per council decision in bug #611234."},{"authoremail":"repo-qa-checks@gentoo.org","authorname":"Repository QA checks","commitid":"945f0d2a26da4f944fd06ad6a874f69d37ce1e06","committime":"2015-08-09T09:26:46","packageid":52408,"repoid":1,"summary":"2015-08-09 09:26:21 UTC"},{"authoremail":"robbat2@gentoo.org","authorname":"Robin H. Johnson","body":"This commit represents a new era for Gentoo:\nStoring the gentoo-x86 tree in Git, as converted from CVS.\n\nThis commit is the start of the NEW history.\nAny historical data is intended to be grafted onto this point.\n\nCreation process:\n1. Take final CVS checkout snapshot\n2. Remove ALL ChangeLog* files\n3. Transform all Manifests to thin\n4. Remove empty Manifests\n5. Convert all stale $Header$\/$Id$ CVS keywords to non-expanded Git $Id$\n5.1. Do not touch files with -kb\/-ko keyword flags.\n\nSigned-off-by: Robin H. Johnson \nX-Thanks: Alec Warner - did the GSoC 2006 migration tests\nX-Thanks: Robin H. Johnson - infra guy, herding this project\nX-Thanks: Nguyen Thai Ngoc Duy - Former Gentoo developer, wrote Git features for the migration\nX-Thanks: Brian Harring - wrote much python to improve cvs2svn\nX-Thanks: Rich Freeman - validation scripts\nX-Thanks: Patrick Lauer - Gentoo dev, running new 2014 work in migration\nX-Thanks: Michał Górny - scripts, QA, nagging\nX-Thanks: All of other Gentoo developers - many ideas and lots of paint on the bikeshed","commitid":"56bd759df1d0c750a065b8c845e93d5dfa6b549d","committime":"2015-08-08T20:49:04","packageid":52408,"repoid":1,"summary":"proj\/gentoo: Initial commit"},{"authoremail":"repo-qa-checks@gentoo.org","authorname":"Repository QA checks","commitid":"a637bd65b7fef8e2be4e7fc6e9097479372e0e2e","committime":"2015-06-19T16:38:33","packageid":52408,"repoid":1,"summary":"2015-06-19 16:35:30 UTC"}],"dependencies":[{"block":false,"categoryid":353,"description":"Perl tools for bioinformatics - Core modules","ebuildids":[754785],"firstseen":"2010-05-04T00:54:45.661860","maintainer":"sci-biology@gentoo.org","maintainername":"Gentoo Biology Project","name":"bioperl","packageid":42900},{"block":false,"categoryid":425,"description":"Perl extension to test methods for warnings","ebuildids":[754785],"firstseen":"2010-05-04T00:54:45.661860","maintainer":"perl@gentoo.org","maintainername":"Gentoo Perl Project","name":"Test-Warn","packageid":44463},{"block":false,"categoryid":450,"description":"Larry Wall's Practical Extraction and Report Language","ebuildids":[754785],"firstseen":"2010-05-04T00:54:45.661860","maintainer":"perl@gentoo.org","maintainername":"Gentoo Perl Project","name":"perl","packageid":44582},{"block":false,"categoryid":425,"description":"Test functions for exception based code","ebuildids":[754785],"firstseen":"2010-05-04T00:54:45.661860","maintainer":"perl@gentoo.org","maintainername":"Gentoo Perl Project","name":"Test-Exception","packageid":45438},{"block":false,"categoryid":425,"description":"Database independent interface for Perl","ebuildids":[754785],"firstseen":"2010-05-04T00:54:45.661860","maintainer":"perl@gentoo.org","maintainername":"Gentoo Perl Project","name":"DBI","packageid":45641},{"block":false,"categoryid":425,"description":"Structured Tags datastructures","ebuildids":[754785],"firstseen":"2010-05-04T00:54:45.661860","maintainer":"sci@gentoo.org","maintainername":"Gentoo Science Project","name":"Data-Stag","packageid":46312},{"block":false,"categoryid":353,"description":"A generic bioinformatics relational database model","ebuildids":[754785],"firstseen":"2010-05-04T00:54:45.661860","maintainer":"sci-biology@gentoo.org","maintainername":"Gentoo Biology Project","name":"biosql","packageid":46941},{"block":false,"categoryid":425,"description":"Apparently run a function in a higher stack frame","ebuildids":[754785],"firstseen":"2010-05-04T00:54:45.661860","maintainer":"perl@gentoo.org","maintainername":"Gentoo Perl Project","name":"Sub-Uplevel","packageid":47645},{"block":false,"categoryid":425,"description":"MySQL driver for the Perl5 Database Interface (DBI)","ebuildids":[754785],"firstseen":"2010-05-04T00:54:45.661860","maintainer":"perl@gentoo.org","maintainername":"Gentoo Perl Project","name":"DBD-mysql","packageid":51064},{"block":false,"categoryid":396,"description":"Virtual for Test-Simple","ebuildids":[754785],"firstseen":"2010-05-04T00:54:45.661860","maintainer":"perl@gentoo.org","maintainername":"Gentoo Perl Project","name":"perl-Test-Simple","packageid":52480}],"depending":[],"ebuilds":[{"archs":["amd64","~x86"],"ebuildid":754785,"firstseen":"2022-07-02T16:49:39.590833","license":"|| ( Artistic GPL-1+ )","moddate":"2026-03-28T18:04:21","packageid":52408,"repoid":1,"slot":"0","uses":["perl_features_debug","perl_features_ithreads","perl_features_quadmath","test"],"version":"1.6.9-r2"}],"masks":[],"package":{"categoryid":353,"description":"Perl tools for bioinformatics - Perl API that accesses the BioSQL schema","firstseen":"2010-05-04T00:54:45.661860","maintainer":"sci-biology@gentoo.org","maintainername":"Gentoo Biology Project","name":"bioperl-db","packageid":52408},"rdependencies":[{"block":false,"categoryid":353,"description":"Perl tools for bioinformatics - Core modules","ebuildids":[754785],"firstseen":"2010-05-04T00:54:45.661860","maintainer":"sci-biology@gentoo.org","maintainername":"Gentoo Biology Project","name":"bioperl","packageid":42900},{"block":false,"categoryid":450,"description":"Larry Wall's Practical Extraction and Report Language","ebuildids":[754785,754785],"firstseen":"2010-05-04T00:54:45.661860","maintainer":"perl@gentoo.org","maintainername":"Gentoo Perl Project","name":"perl","packageid":44582},{"block":false,"categoryid":425,"description":"Database independent interface for Perl","ebuildids":[754785],"firstseen":"2010-05-04T00:54:45.661860","maintainer":"perl@gentoo.org","maintainername":"Gentoo Perl Project","name":"DBI","packageid":45641},{"block":false,"categoryid":353,"description":"A generic bioinformatics relational database model","ebuildids":[754785],"firstseen":"2010-05-04T00:54:45.661860","maintainer":"sci-biology@gentoo.org","maintainername":"Gentoo Biology Project","name":"biosql","packageid":46941},{"block":false,"categoryid":425,"description":"MySQL driver for the Perl5 Database Interface (DBI)","ebuildids":[754785],"firstseen":"2010-05-04T00:54:45.661860","maintainer":"perl@gentoo.org","maintainername":"Gentoo Perl Project","name":"DBD-mysql","packageid":51064}],"repos":[{"branch":"master","lastcommit":"82366aa45a35f6900f43023917c2c86ccdbb00a3","name":"gentoo","path":"\/usr\/portage","repoid":1,"upstream":"origin"}],"tracked":false,"urls":["http:\/\/www.bioperl.org\/"],"uses":[{"description":"Enable dependencies and\/or preparations necessary to run tests (usually controlled by FEATURES=test but can be toggled independently)","isdefault":false,"use":"test"},{"description":"PERL_FEATURES setting enabling internal debug support in Perl","group":"perl_features","isdefault":false,"use":"debug"},{"description":"PERL_FEATURES setting enabling interpreter level threads, has some compatibility problems","group":"perl_features","isdefault":false,"use":"ithreads"},{"description":"PERL_FEATURES setting enabling 128bit floating point arithmetic via libquadmath","group":"perl_features","isdefault":false,"use":"quadmath"}]}