sci-biology / bioperl-db

Perl tools for bioinformatics - Perl API that accesses the BioSQL schema

Official package sites : http://www.bioperl.org/ ·

v9999-r1 :: 0 :: gentoo

Modified
License
Artistic GPL-2

v1.6.9-r1 :: 0 :: gentoo

Modified
License
|| ( Artistic GPL-1+ )
Keywords
~amd64 ~x86
USE flags
test

v1.6.9 :: 0 :: gentoo

Modified
License
|| ( Artistic GPL-1+ )
Keywords
amd64 x86
USE flags
test

General

test
Enable dependencies and/or preparations necessary to run tests (usually controlled by FEATURES=test but can be toggled independently)

dev-lang / perl : Larry Wall's Practical Extraction and Report Language

dev-perl / DBD-mysql : MySQL driver for the Perl5 Database Interface (DBI)

dev-perl / DBI : Database independent interface for Perl

dev-perl / Data-Stag : Structured Tags datastructures

dev-perl / Module-Build : Build and install Perl modules

dev-perl / Sub-Uplevel : Apparently run a function in a higher stack frame

dev-perl / Test-Exception : Test functions for exception based code

dev-perl / Test-Warn : Perl extension to test methods for warnings

dev-vcs / git : stupid content tracker: distributed VCS designed for speed and efficiency

sci-biology / bioperl : Perl tools for bioinformatics - Core modules

sci-biology / biosql : A generic bioinformatics relational database model

virtual / perl-Test-Simple : Virtual for Test-Simple

dev-lang / perl : Larry Wall's Practical Extraction and Report Language

dev-perl / DBD-mysql : MySQL driver for the Perl5 Database Interface (DBI)

dev-perl / DBI : Database independent interface for Perl

sci-biology / bioperl : Perl tools for bioinformatics - Core modules

sci-biology / biosql : A generic bioinformatics relational database model

David Hicks · gentoo
sci-biology/bioperl-db: use HTTPS for GitHub
Package-Manager: Portage-2.3.6, Repoman-2.3.3
Kent Fredric · gentoo
sci-biology/bioperl-db: Restrict tests re bug #421701
I've tried an excessive amount to get tests working here. But they still need a lot of love. The work I've done so far only gets a mysql test instance up, ( and then, only tested with mariadb ) Somebody needs to work out what's missing to provision the databases that the tests use. Somebody needs to add support for initializing the other kinds of database. Any help here encouraged, but disabling non-functioning tests is the best we can do for now. Package-Manager: Portage-2.3.6, Repoman-2.3.2
Kent Fredric · gentoo
sci-biology/bioperl-db: EAPI6/-R1 Bump
- Test infa overhauled slightly - EAPI6ified - More test changes planned - -r1 bump mostly for double-safety around EAPI6 changes Package-Manager: Portage-2.3.6, Repoman-2.3.2
Kent Fredric · gentoo
sci-biology/bioperl-db: Fix broken test dependencies
Bundled versions of CPAN modules in t/ lacked all their dependencies being declared, leading to bundled copy of Test::Warn fail when Array::Compare was not installed. Additionally, parts didn't play nice together and warned about old versions of things. This is fixed buy uncermoniously removing all bundled test libraries and marking them as dependencies instead. Package-Manager: Portage-2.3.6, Repoman-2.3.2
Robin H. Johnson · gentoo
Drop $Id$ per council decision in bug #611234.
Signed-off-by: Robin H. Johnson <robbat2@gentoo.org>
Robin H. Johnson · gentoo
proj/gentoo: Initial commit
This commit represents a new era for Gentoo: Storing the gentoo-x86 tree in Git, as converted from CVS. This commit is the start of the NEW history. Any historical data is intended to be grafted onto this point. Creation process: 1. Take final CVS checkout snapshot 2. Remove ALL ChangeLog* files 3. Transform all Manifests to thin 4. Remove empty Manifests 5. Convert all stale $Header$/$Id$ CVS keywords to non-expanded Git $Id$ 5.1. Do not touch files with -kb/-ko keyword flags. Signed-off-by: Robin H. Johnson <robbat2@gentoo.org> X-Thanks: Alec Warner <antarus@gentoo.org> - did the GSoC 2006 migration tests X-Thanks: Robin H. Johnson <robbat2@gentoo.org> - infra guy, herding this project X-Thanks: Nguyen Thai Ngoc Duy <pclouds@gentoo.org> - Former Gentoo developer, wrote Git features for the migration X-Thanks: Brian Harring <ferringb@gentoo.org> - wrote much python to improve cvs2svn X-Thanks: Rich Freeman <rich0@gentoo.org> - validation scripts X-Thanks: Patrick Lauer <patrick@gentoo.org> - Gentoo dev, running new 2014 work in migration X-Thanks: Michał Górny <mgorny@gentoo.org> - scripts, QA, nagging X-Thanks: All of other Gentoo developers - many ideas and lots of paint on the bikeshed