{"bugs":[],"categories":[{"categoryid":450,"name":"dev-lang","summary":"The dev-lang category contains various programming language implementations and related tools."},{"categoryid":425,"name":"dev-perl","summary":"The dev-perl category contains libraries and utilities relevant to the Perl programming language."},{"categoryid":353,"name":"sci-biology","summary":"The sci-biology category contains software that can be used in biological and related scientific environments."}],"changelog":[{"authoremail":"repomirrorci@gentoo.org","authorname":"Repository mirror & CI","commitid":"f2979793991144637956e4225ce4d0235900c1a2","committime":"2023-06-09T15:16:56","packageid":45447,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"arthurzam@gentoo.org","authorname":"Arthur Zamarin","body":"Signed-off-by: Arthur Zamarin ","commitid":"95c11f77d9b0eb9a42bd09bc94c112ffba6c0a9b","committime":"2023-06-03T14:45:38","packageid":45447,"repoid":1,"summary":"sci-biology\/bioperl-run: destabilize for ~x86"},{"authoremail":"repomirrorci@gentoo.org","authorname":"Repository mirror & CI","commitid":"6471433e11fd75f7ee15d047490dd3e9ebe69fa0","committime":"2022-03-19T17:19:10","packageid":45447,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"soap@gentoo.org","authorname":"David Seifert","body":"Closes: https:\/\/bugs.gentoo.org\/835362\nSigned-off-by: David Seifert ","commitid":"600880b34ddaaf4b9ff6faaae46545b76db394c5","committime":"2022-03-19T17:07:56","packageid":45447,"repoid":1,"summary":"sci-biology\/bioperl-run: update EAPI 5 -> 8"},{"authoremail":"repomirrorci@gentoo.org","authorname":"Repository mirror & CI","commitid":"052d78034bc804616d22e95a639483a128bbac7f","committime":"2021-06-03T19:41:08","packageid":45447,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"sam@gentoo.org","authorname":"Sam James","body":"-foo in IUSE is discouraged. It is equivalent (in every meaningful case) to 'foo' but confuses parsing\ntools like e.g. packages.gentoo.org.\n\nDropping '-' from these flags has no impact on the actual default behaviour.\n\nSee: https:\/\/devmanual.gentoo.org\/general-concepts\/use-flags\/index.html#iuse-defaults\nPackage-Manager: Portage-3.0.19, Repoman-3.0.3\nSigned-off-by: Sam James ","commitid":"9f98d6b84b9b36a862e594f2f47bc04e07a0e988","committime":"2021-06-02T23:57:59","packageid":45447,"repoid":1,"summary":"sci-biology\/bioperl-run: fix BadDefaultUseFlags"},{"authoremail":"repomirrorci@gentoo.org","authorname":"Repository mirror & CI","commitid":"8b368eab2a3c4b4890f660827d21dd46d94e7256","committime":"2019-12-15T20:45:37","packageid":45447,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"mgorny@gentoo.org","authorname":"Michał Górny","body":"Signed-off-by: Michał Górny ","commitid":"49f0b3fce2b693006776924c55bb1ce0cb0ba9e9","committime":"2019-12-15T20:18:19","packageid":45447,"repoid":1,"summary":"sci-biology\/bioperl-run: Drop unmaintained -9999"},{"authoremail":"repo-qa-checks@gentoo.org","authorname":"Repository QA checks","commitid":"4e58a061195d348da47eb8cee0eb20297b79160f","committime":"2017-07-30T10:23:31","packageid":45447,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"david@hicks.id.au","authorname":"David Hicks","body":"Package-Manager: Portage-2.3.6, Repoman-2.3.3","commitid":"6d0bccf67a293af22dab2b57a6d185dc790dab20","committime":"2017-07-29T18:46:23","packageid":45447,"repoid":1,"summary":"sci-biology\/bioperl-run: use HTTPS for GitHub"},{"authoremail":"repo-qa-checks@gentoo.org","authorname":"Repository QA checks","commitid":"25093d6359f778b8d1052f66ba9e26fc29ded21a","committime":"2017-02-28T20:35:29","packageid":45447,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"robbat2@gentoo.org","authorname":"Robin H. Johnson","body":"Signed-off-by: Robin H. Johnson ","commitid":"61b861acd7b49083dab687e133f30f3331cb7480","committime":"2017-02-28T19:47:27","packageid":45447,"repoid":1,"summary":"Drop $Id$ per council decision in bug #611234."},{"authoremail":"malfatti@neuro.ufrn.br","authorname":"T. Malfatti","commitid":"8457ba6f9fd6f0dbafcca1fb375788eeea02aae1","committime":"2017-01-26T18:44:34","packageid":45447,"repoid":1,"summary":"media-libs\/portaudio: Version bump"},{"authoremail":"repo-qa-checks@gentoo.org","authorname":"Repository QA checks","commitid":"97a62272607aabcf7bc455cce5648eff08c7bd34","committime":"2016-11-18T22:42:07","packageid":45447,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"soap@gentoo.org","authorname":"David Seifert","body":"Package-Manager: portage-2.3.2","commitid":"74a6e9cf1366fe6a725becc57747cc042f08df54","committime":"2016-11-18T22:01:59","packageid":45447,"repoid":1,"summary":"sci-biology\/bioperl-run: Fix overlong DESCRIPTION"},{"authoremail":"repo-qa-checks@gentoo.org","authorname":"Repository QA checks","commitid":"945f0d2a26da4f944fd06ad6a874f69d37ce1e06","committime":"2015-08-09T09:26:46","packageid":45447,"repoid":1,"summary":"2015-08-09 09:26:21 UTC"},{"authoremail":"robbat2@gentoo.org","authorname":"Robin H. Johnson","body":"This commit represents a new era for Gentoo:\nStoring the gentoo-x86 tree in Git, as converted from CVS.\n\nThis commit is the start of the NEW history.\nAny historical data is intended to be grafted onto this point.\n\nCreation process:\n1. Take final CVS checkout snapshot\n2. Remove ALL ChangeLog* files\n3. Transform all Manifests to thin\n4. Remove empty Manifests\n5. Convert all stale $Header$\/$Id$ CVS keywords to non-expanded Git $Id$\n5.1. Do not touch files with -kb\/-ko keyword flags.\n\nSigned-off-by: Robin H. Johnson \nX-Thanks: Alec Warner - did the GSoC 2006 migration tests\nX-Thanks: Robin H. Johnson - infra guy, herding this project\nX-Thanks: Nguyen Thai Ngoc Duy - Former Gentoo developer, wrote Git features for the migration\nX-Thanks: Brian Harring - wrote much python to improve cvs2svn\nX-Thanks: Rich Freeman - validation scripts\nX-Thanks: Patrick Lauer - Gentoo dev, running new 2014 work in migration\nX-Thanks: Michał Górny - scripts, QA, nagging\nX-Thanks: All of other Gentoo developers - many ideas and lots of paint on the bikeshed","commitid":"56bd759df1d0c750a065b8c845e93d5dfa6b549d","committime":"2015-08-08T20:49:04","packageid":45447,"repoid":1,"summary":"proj\/gentoo: Initial commit"},{"authoremail":"repo-qa-checks@gentoo.org","authorname":"Repository QA checks","commitid":"a637bd65b7fef8e2be4e7fc6e9097479372e0e2e","committime":"2015-06-19T16:38:33","packageid":45447,"repoid":1,"summary":"2015-06-19 16:35:30 UTC"}],"dependencies":[{"block":false,"categoryid":353,"description":"Perl tools for bioinformatics - Core modules","ebuildids":[743619],"firstseen":"2010-05-04T00:54:45.661860","maintainer":"sci-biology@gentoo.org","maintainername":"Gentoo Biology Project","name":"bioperl","packageid":42900},{"block":false,"categoryid":425,"description":"system() and background procs w\/ piping, redirs, ptys","ebuildids":[743619],"firstseen":"2010-05-04T00:54:45.661860","maintainer":"perl@gentoo.org","maintainername":"Gentoo Perl Project","name":"IPC-Run","packageid":44349},{"block":false,"categoryid":450,"description":"Larry Wall's Practical Extraction and Report Language","ebuildids":[743619],"firstseen":"2010-05-04T00:54:45.661860","maintainer":"perl@gentoo.org","maintainername":"Gentoo Perl Project","name":"perl","packageid":44582},{"block":false,"categoryid":425,"description":"Compute intelligent differences between two files \/ lists","ebuildids":[743619],"firstseen":"2010-05-04T00:54:45.661860","maintainer":"sci@gentoo.org","maintainername":"Gentoo Science Project","name":"Algorithm-Diff","packageid":50298},{"block":false,"categoryid":425,"description":"IO::File interface for in-core strings","ebuildids":[743619],"firstseen":"2010-05-04T00:54:45.661860","maintainer":"perl@gentoo.org","maintainername":"Gentoo Perl Project","name":"IO-String","packageid":51785},{"block":false,"categoryid":425,"description":"Process huge XML documents in tree mode","ebuildids":[743619],"firstseen":"2010-05-04T00:54:45.661860","maintainer":"perl@gentoo.org","maintainername":"Gentoo Perl Project","name":"XML-Twig","packageid":52189},{"block":false,"categoryid":425,"description":"Sort a file or merge sort multiple files","ebuildids":[743619],"firstseen":"2011-07-18T14:39:32.482510","maintainer":"sci@gentoo.org","maintainername":"Gentoo Science Project","name":"File-Sort","packageid":57620}],"depending":[],"ebuilds":[{"archs":["amd64","~x86"],"ebuildid":743619,"firstseen":"2022-03-19T17:35:02.155800","license":"|| ( Artistic GPL-1+ )","moddate":"2025-04-12T16:59:56","packageid":45447,"repoid":1,"slot":"0","uses":["minimal","perl_features_debug","perl_features_ithreads","perl_features_quadmath","test"],"version":"1.6.9-r1"}],"masks":[],"package":{"categoryid":353,"description":"Perl wrapper modules for key bioinformatics applications","firstseen":"2010-05-04T00:54:45.661860","maintainer":"sci-biology@gentoo.org","maintainername":"Gentoo Biology Project","name":"bioperl-run","packageid":45447},"rdependencies":[{"block":false,"categoryid":353,"description":"Perl tools for bioinformatics - 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