{"bugs":[],"categories":[{"categoryid":353,"name":"sci-biology","summary":"The sci-biology category contains software that can be used in biological and related scientific environments."}],"changelog":[{"authoremail":"repomirrorci@gentoo.org","authorname":"Repository mirror & CI","commitid":"a198e862478387fe37b4d232d51a3edb558cd3e0","committime":"2025-12-19T10:01:01","packageid":46991,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"grobian@gentoo.org","authorname":"Fabian Groffen","body":"Bug: https:\/\/bugs.gentoo.org\/473598\nBug: https:\/\/bugs.gentoo.org\/720224\nSigned-off-by: Fabian Groffen ","commitid":"2d25fad95cbaa525c8945d8e582c749d49524f49","committime":"2025-12-19T09:25:43","packageid":46991,"repoid":1,"summary":"*\/*: drop *-linux keywords"},{"authoremail":"repomirrorci@gentoo.org","authorname":"Repository mirror & CI","commitid":"32e3eebb0618b8db62c2945a6cb9d39428b160e3","committime":"2022-05-13T20:18:11","packageid":46991,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"t@laumann.xyz","authorname":"Thomas Bracht Laumann Jespersen","body":"Signed-off-by: Thomas Bracht Laumann Jespersen \nSigned-off-by: Sam James ","commitid":"221f6b599dcf26ab84be8e4ee2d77cfbb16c257b","committime":"2022-04-20T19:57:06","packageid":46991,"repoid":1,"summary":"sci-biology\/cutg: [QA] eend without argument"},{"authoremail":"repomirrorci@gentoo.org","authorname":"Repository mirror & CI","commitid":"484f7c925785a3c30076d8c7150e610fa0bfc48e","committime":"2021-04-05T13:49:53","packageid":46991,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"soap@gentoo.org","authorname":"David Seifert","body":"Package-Manager: Portage-3.0.18, Repoman-3.0.3\nSigned-off-by: David Seifert ","commitid":"25a60dea75866f20058ff6fa723feb9a043ac5d5","committime":"2021-04-05T13:30:39","packageid":46991,"repoid":1,"summary":"sci-biology\/cutg: Port to EAPI 7"},{"authoremail":"repo-qa-checks@gentoo.org","authorname":"Repository QA checks","commitid":"25093d6359f778b8d1052f66ba9e26fc29ded21a","committime":"2017-02-28T20:35:29","packageid":46991,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"robbat2@gentoo.org","authorname":"Robin H. Johnson","body":"Signed-off-by: Robin H. Johnson ","commitid":"61b861acd7b49083dab687e133f30f3331cb7480","committime":"2017-02-28T19:47:27","packageid":46991,"repoid":1,"summary":"Drop $Id$ per council decision in bug #611234."},{"authoremail":"repo-qa-checks@gentoo.org","authorname":"Repository QA checks","commitid":"e97b8c8ed5df03f1a539438e22e9ab351550f476","committime":"2017-02-19T19:02:03","packageid":46991,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"soap@gentoo.org","authorname":"David Seifert","body":"Package-Manager: Portage-2.3.3, Repoman-2.3.1\nCloses: https:\/\/github.com\/gentoo\/gentoo\/pull\/3937","commitid":"4b7799b55bbd06e9a35e1ff365a1ac4d5d073d0b","committime":"2017-02-19T18:41:35","packageid":46991,"repoid":1,"summary":"sci-biology\/cutg: Drop to unstable"},{"authoremail":"repo-qa-checks@gentoo.org","authorname":"Repository QA checks","commitid":"e276789fbac1f63ee217f1146713347048bdbfe3","committime":"2017-02-06T21:38:43","packageid":46991,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"soap@gentoo.org","authorname":"David Seifert","body":"Package-Manager: Portage-2.3.3, Repoman-2.3.1\nCloses: https:\/\/github.com\/gentoo\/gentoo\/pull\/3856","commitid":"a18c9b98f9cd9274cc6ba9d0a85ad3164afa8ebd","committime":"2017-02-06T20:47:59","packageid":46991,"repoid":1,"summary":"sci-biology\/cutg: Remove ppc from KEYWORDS"},{"authoremail":"repo-qa-checks@gentoo.org","authorname":"Repository QA checks","commitid":"ef24c6d38ee6f1f594bfced120ea11754942aaf9","committime":"2015-08-24T11:26:48","packageid":46991,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"jlec@gentoo.org","authorname":"Justin Lecher","body":"Convert all URLs for sites supporting encrypted connections from http to https\n\nSigned-off-by: Justin Lecher ","commitid":"eaaface92ee81f30a6ac66fe7acbcc42c00dc450","committime":"2015-08-24T10:47:45","packageid":46991,"repoid":1,"summary":"Use https by default"},{"authoremail":"repo-qa-checks@gentoo.org","authorname":"Repository QA checks","commitid":"945f0d2a26da4f944fd06ad6a874f69d37ce1e06","committime":"2015-08-09T09:26:46","packageid":46991,"repoid":1,"summary":"2015-08-09 09:26:21 UTC"},{"authoremail":"robbat2@gentoo.org","authorname":"Robin H. Johnson","body":"This commit represents a new era for Gentoo:\nStoring the gentoo-x86 tree in Git, as converted from CVS.\n\nThis commit is the start of the NEW history.\nAny historical data is intended to be grafted onto this point.\n\nCreation process:\n1. Take final CVS checkout snapshot\n2. Remove ALL ChangeLog* files\n3. Transform all Manifests to thin\n4. Remove empty Manifests\n5. Convert all stale $Header$\/$Id$ CVS keywords to non-expanded Git $Id$\n5.1. Do not touch files with -kb\/-ko keyword flags.\n\nSigned-off-by: Robin H. Johnson \nX-Thanks: Alec Warner - did the GSoC 2006 migration tests\nX-Thanks: Robin H. Johnson - infra guy, herding this project\nX-Thanks: Nguyen Thai Ngoc Duy - Former Gentoo developer, wrote Git features for the migration\nX-Thanks: Brian Harring - wrote much python to improve cvs2svn\nX-Thanks: Rich Freeman - validation scripts\nX-Thanks: Patrick Lauer - Gentoo dev, running new 2014 work in migration\nX-Thanks: Michał Górny - scripts, QA, nagging\nX-Thanks: All of other Gentoo developers - many ideas and lots of paint on the bikeshed","commitid":"56bd759df1d0c750a065b8c845e93d5dfa6b549d","committime":"2015-08-08T20:49:04","packageid":46991,"repoid":1,"summary":"proj\/gentoo: Initial commit"},{"authoremail":"repo-qa-checks@gentoo.org","authorname":"Repository QA checks","commitid":"a637bd65b7fef8e2be4e7fc6e9097479372e0e2e","committime":"2015-06-19T16:38:33","packageid":46991,"repoid":1,"summary":"2015-06-19 16:35:30 UTC"}],"dependencies":[],"depending":[],"ebuilds":[{"archs":["~amd64","~x86"],"ebuildid":538214,"firstseen":"2015-03-05T14:34:05.601329","license":"public-domain","moddate":"2025-12-19T10:14:53","packageid":46991,"repoid":1,"slot":"0","uses":["emboss","minimal"],"version":"160-r1"}],"masks":[],"package":{"categoryid":353,"description":"Codon usage tables calculated from GenBank","firstseen":"2010-05-04T00:54:45.661860","maintainer":"sci-biology@gentoo.org","maintainername":"Gentoo Biology Project","name":"cutg","packageid":46991,"summary":"Codon usage tables maintained at the Kazusa DNA Research Institute. Codon usage in individual genes has been calculated using the nucleotide sequence data obtained from the GenBank Genetic Sequence Database. The compilation of codon usage is synchronized with each major release of GenBank."},"rdependencies":[{"block":false,"categoryid":353,"description":"The European Molecular Biology Open Software Suite - A sequence analysis package","ebuildids":[538214],"firstseen":"2010-05-04T00:54:45.661860","maintainer":"sci-biology@gentoo.org","maintainername":"Gentoo Biology Project","name":"emboss","packageid":54441,"summary":"EMBOSS is \"The European Molecular Biology Open Software Suite\". EMBOSS is a free Open Source software analysis package specially developed for the needs of the molecular biology (e.g. EMBnet) user community. The software automatically copes with data in a variety of formats and even allows transparent retrieval of sequence data from the web. Also, as extensive libraries are provided with the package, it is a platform to allow other scientists to develop and release software in true open source spirit. EMBOSS also integrates a range of currently available packages and tools for sequence analysis into a seamless whole. EMBOSS breaks the historical trend towards commercial software packages."}],"repos":[{"branch":"master","lastcommit":"52197549fd3431fa256b8edbafdcd3702dd0e134","name":"gentoo","path":"\/usr\/portage","repoid":1,"upstream":"origin"}],"tracked":false,"urls":["http:\/\/www.kazusa.or.jp\/codon\/"],"uses":[{"description":"Add support for the European Molecular Biology Open Software Suite","isdefault":false,"use":"emboss"},{"description":"Install a very minimal build (disables, for example, plugins, fonts, most drivers, non-critical features)","isdefault":false,"use":"minimal"}]}