{"bugs":[{"bugid":941102,"firstseen":"2025-07-11T02:48:40.189262","severity":"normal","status":"CONFIRMED","summary":"sci-biology\/dialign-tx-1.0.2-r2 - [libtool] [gcc-15] museq.c: error: type of simple_aligner does not match original declaration [-Werror=lto-type-mismatch]"}],"categories":[{"categoryid":353,"name":"sci-biology","summary":"The sci-biology category contains software that can be used in biological and related scientific environments."}],"changelog":[{"authoremail":"repomirrorci@gentoo.org","authorname":"Repository mirror & CI","commitid":"e332bcf48978c21cd488743047c02d61bc77bcce","committime":"2020-11-01T19:05:14","packageid":51444,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"soap@gentoo.org","authorname":"David Seifert","body":"Closes: https:\/\/bugs.gentoo.org\/707008\nCloses: https:\/\/bugs.gentoo.org\/727966\nPackage-Manager: Portage-3.0.8, Repoman-3.0.2\nSigned-off-by: David Seifert ","commitid":"4344861bbf45ec0e259a986b19942ce284f93fc9","committime":"2020-11-01T18:35:50","packageid":51444,"repoid":1,"summary":"sci-biology\/dialign-tx: Fix -fno-common"},{"authoremail":"repo-qa-checks@gentoo.org","authorname":"Repository QA checks","commitid":"2e2a4d9cd52c0e555d5f4e5436df545fbc52512b","committime":"2017-12-25T16:25:47","packageid":51444,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"soap@gentoo.org","authorname":"David Seifert","body":"Package-Manager: Portage-2.3.19, Repoman-2.3.6","commitid":"99a343eef7c4aa787b9d30e69c798cd467db89fa","committime":"2017-12-25T09:58:24","packageid":51444,"repoid":1,"summary":"sci-biology\/dialign-tx: Remove old"},{"authoremail":"repo-qa-checks@gentoo.org","authorname":"Repository QA checks","commitid":"736d72901f65895ab77e05620f453f01b7d70489","committime":"2017-12-25T09:48:26","packageid":51444,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"soap@gentoo.org","authorname":"David Seifert","body":"* Also port to EAPI 6\nCloses: https:\/\/bugs.gentoo.org\/640188\nPackage-Manager: Portage-2.3.19, Repoman-2.3.6","commitid":"470054f8e4bca944eff4bed8b471a088d2927a00","committime":"2017-12-24T21:09:33","packageid":51444,"repoid":1,"summary":"sci-biology\/dialign-tx: Fix C99 inline semantics"},{"authoremail":"repo-qa-checks@gentoo.org","authorname":"Repository QA checks","commitid":"25093d6359f778b8d1052f66ba9e26fc29ded21a","committime":"2017-02-28T20:35:29","packageid":51444,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"robbat2@gentoo.org","authorname":"Robin H. Johnson","body":"Signed-off-by: Robin H. Johnson ","commitid":"61b861acd7b49083dab687e133f30f3331cb7480","committime":"2017-02-28T19:47:27","packageid":51444,"repoid":1,"summary":"Drop $Id$ per council decision in bug #611234."},{"authoremail":"idella4@gentoo.org","authorname":"Ian Delaney","body":"Pull request: https:\/\/github.com\/gentoo\/gentoo\/pull\/583","commitid":"d64904b70c07a4fbe389bea7466200fce933388e","committime":"2016-01-01T00:05:56","packageid":51444,"repoid":1,"summary":"Merge remote-tracking branch 'remotes\/dryatu\/master'"},{"authoremail":"repo-qa-checks@gentoo.org","authorname":"Repository QA checks","commitid":"1e3f1d910e7af3bc4d26d2c3aba73f06b5968709","committime":"2015-12-31T15:30:19","packageid":51444,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"jlec@gentoo.org","authorname":"Justin Lecher","body":"* SoapZaNet-bug-570252:\n sci-biology\/dialign-tx: fixes GCC-5 inline semantics and -Wformat= warnings, #570252","commitid":"57f519a1b697a96c24e9a14a6d0e3e3754fcc645","committime":"2015-12-31T15:13:50","packageid":51444,"repoid":1,"summary":"Merge branch 'SoapZaNet-bug-570252'"},{"authoremail":"ted.tanberry@gmail.com","authorname":"Ted Tanberry","body":"Package-Manager: portage-2.2.26","commitid":"7423912f5bd2b50c626cc0e60f8a4ecc1929baf1","committime":"2015-12-31T14:55:26","packageid":51444,"repoid":1,"summary":"sci-biology\/dialign-tx: fixes GCC-5 inline semantics and -Wformat= warnings, #570252"},{"authoremail":"repo-qa-checks@gentoo.org","authorname":"Repository QA checks","commitid":"945f0d2a26da4f944fd06ad6a874f69d37ce1e06","committime":"2015-08-09T09:26:46","packageid":51444,"repoid":1,"summary":"2015-08-09 09:26:21 UTC"},{"authoremail":"robbat2@gentoo.org","authorname":"Robin H. Johnson","body":"This commit represents a new era for Gentoo:\nStoring the gentoo-x86 tree in Git, as converted from CVS.\n\nThis commit is the start of the NEW history.\nAny historical data is intended to be grafted onto this point.\n\nCreation process:\n1. Take final CVS checkout snapshot\n2. Remove ALL ChangeLog* files\n3. Transform all Manifests to thin\n4. Remove empty Manifests\n5. Convert all stale $Header$\/$Id$ CVS keywords to non-expanded Git $Id$\n5.1. Do not touch files with -kb\/-ko keyword flags.\n\nSigned-off-by: Robin H. Johnson \nX-Thanks: Alec Warner - did the GSoC 2006 migration tests\nX-Thanks: Robin H. Johnson - infra guy, herding this project\nX-Thanks: Nguyen Thai Ngoc Duy - Former Gentoo developer, wrote Git features for the migration\nX-Thanks: Brian Harring - wrote much python to improve cvs2svn\nX-Thanks: Rich Freeman - validation scripts\nX-Thanks: Patrick Lauer - Gentoo dev, running new 2014 work in migration\nX-Thanks: Michał Górny - scripts, QA, nagging\nX-Thanks: All of other Gentoo developers - many ideas and lots of paint on the bikeshed","commitid":"56bd759df1d0c750a065b8c845e93d5dfa6b549d","committime":"2015-08-08T20:49:04","packageid":51444,"repoid":1,"summary":"proj\/gentoo: Initial commit"},{"authoremail":"repo-qa-checks@gentoo.org","authorname":"Repository QA checks","commitid":"a637bd65b7fef8e2be4e7fc6e9097479372e0e2e","committime":"2015-06-19T16:38:33","packageid":51444,"repoid":1,"summary":"2015-06-19 16:35:30 UTC"}],"dependencies":[],"depending":[],"ebuilds":[{"archs":["~amd64","~x86"],"ebuildid":41284,"firstseen":"2017-12-25T09:53:47.445016","license":"LGPL-2.1","moddate":"2026-03-22T20:20:57","packageid":51444,"repoid":1,"slot":"0","uses":[],"version":"1.0.2-r2"}],"masks":[],"package":{"categoryid":353,"description":"Greedy and progressive approaches for segment-based multiple sequence alignment","firstseen":"2010-05-04T00:54:45.661860","maintainer":"sci-biology@gentoo.org","maintainername":"Gentoo Biology Project","name":"dialign-tx","packageid":51444},"rdependencies":[],"repos":[{"branch":"master","lastcommit":"f87ce2b74421571078063820dc1065e7089c9fa7","name":"gentoo","path":"\/usr\/portage","repoid":1,"upstream":"origin"}],"tracked":false,"urls":["http:\/\/dialign-tx.gobics.de\/"],"uses":[]}