{"bugs":[],"categories":[{"categoryid":353,"name":"sci-biology","summary":"The sci-biology category contains software that can be used in biological and related scientific environments."}],"changelog":[{"authoremail":"repomirrorci@gentoo.org","authorname":"Repository mirror & CI","commitid":"a198e862478387fe37b4d232d51a3edb558cd3e0","committime":"2025-12-19T10:01:01","packageid":55065,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"grobian@gentoo.org","authorname":"Fabian Groffen","body":"Bug: https:\/\/bugs.gentoo.org\/473598\nBug: https:\/\/bugs.gentoo.org\/720224\nSigned-off-by: Fabian Groffen ","commitid":"2d25fad95cbaa525c8945d8e582c749d49524f49","committime":"2025-12-19T09:25:43","packageid":55065,"repoid":1,"summary":"*\/*: drop *-linux keywords"},{"authoremail":"repomirrorci@gentoo.org","authorname":"Repository mirror & CI","commitid":"b082176271c4f0d63a97962e4b75785991196236","committime":"2025-12-17T15:16:13","packageid":55065,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"grobian@gentoo.org","authorname":"Fabian Groffen","body":"The arch and OS that matches it are obsolete.\n\nSigned-off-by: Fabian Groffen ","commitid":"0a7ffce789e36042bac35ea5e0b8b2b654e5b490","committime":"2025-12-17T15:07:23","packageid":55065,"repoid":1,"summary":"*: remove ppc-macos keyword"},{"authoremail":"repomirrorci@gentoo.org","authorname":"Repository mirror & CI","commitid":"972cb1eed49322b690663b98e562e81e8a73aee7","committime":"2023-09-07T09:17:15","packageid":55065,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"brahmajit.xyz@gmail.com","authorname":"Brahmajit Das","body":"Closes: https:\/\/github.com\/gentoo\/gentoo\/pull\/32664\nCloses: https:\/\/bugs.gentoo.org\/898116\nSigned-off-by: Brahmajit Das \nSigned-off-by: David Seifert ","commitid":"763cc65174197beee59a0d1fa56011c6d4a23cf5","committime":"2023-09-07T09:13:26","packageid":55065,"repoid":1,"summary":"sci-biology\/elph: Fix C++17 does not allow register storage class"},{"authoremail":"repomirrorci@gentoo.org","authorname":"Repository mirror & CI","commitid":"af6f0e8ef0bcb907ba1d0760fbc87f04990100a3","committime":"2022-07-07T20:01:37","packageid":55065,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"soap@gentoo.org","authorname":"David Seifert","body":"Signed-off-by: David Seifert ","commitid":"1d39f479a9fc5fb0fb24083c7f027a284786fbf3","committime":"2022-07-07T19:56:51","packageid":55065,"repoid":1,"summary":"sci-biology\/elph: update EAPI 6 -> 8"},{"authoremail":"repo-qa-checks@gentoo.org","authorname":"Repository QA checks","commitid":"40c06e440a62c7335d4881fd0ba2ea9ee97e80db","committime":"2017-03-08T22:22:11","packageid":55065,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"soap@gentoo.org","authorname":"David Seifert","body":"Package-Manager: Portage-2.3.4, Repoman-2.3.2\nCloses: https:\/\/github.com\/gentoo\/gentoo\/pull\/4165","commitid":"7a172acb8e93cf85a11ddd1fdc4170ce9b5ba785","committime":"2017-03-08T21:35:39","packageid":55065,"repoid":1,"summary":"sci-biology\/elph: Remove old"},{"authoremail":"repo-qa-checks@gentoo.org","authorname":"Repository QA checks","commitid":"f9954adf9a4daf8940358a5bda2d892446b4a62e","committime":"2017-03-08T19:02:15","packageid":55065,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"soap@gentoo.org","authorname":"David Seifert","body":"Package-Manager: Portage-2.3.4, Repoman-2.3.2","commitid":"c7f45dbb5043e60a8b4c0a091fcb0465ffbbef50","committime":"2017-03-08T18:46:35","packageid":55065,"repoid":1,"summary":"sci-biology\/elph: Modernise to EAPI 6"},{"authoremail":"repo-qa-checks@gentoo.org","authorname":"Repository QA checks","commitid":"25093d6359f778b8d1052f66ba9e26fc29ded21a","committime":"2017-02-28T20:35:29","packageid":55065,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"robbat2@gentoo.org","authorname":"Robin H. Johnson","body":"Signed-off-by: Robin H. Johnson ","commitid":"61b861acd7b49083dab687e133f30f3331cb7480","committime":"2017-02-28T19:47:27","packageid":55065,"repoid":1,"summary":"Drop $Id$ per council decision in bug #611234."},{"authoremail":"repo-qa-checks@gentoo.org","authorname":"Repository QA checks","commitid":"945f0d2a26da4f944fd06ad6a874f69d37ce1e06","committime":"2015-08-09T09:26:46","packageid":55065,"repoid":1,"summary":"2015-08-09 09:26:21 UTC"},{"authoremail":"robbat2@gentoo.org","authorname":"Robin H. Johnson","body":"This commit represents a new era for Gentoo:\nStoring the gentoo-x86 tree in Git, as converted from CVS.\n\nThis commit is the start of the NEW history.\nAny historical data is intended to be grafted onto this point.\n\nCreation process:\n1. Take final CVS checkout snapshot\n2. Remove ALL ChangeLog* files\n3. Transform all Manifests to thin\n4. Remove empty Manifests\n5. Convert all stale $Header$\/$Id$ CVS keywords to non-expanded Git $Id$\n5.1. Do not touch files with -kb\/-ko keyword flags.\n\nSigned-off-by: Robin H. Johnson \nX-Thanks: Alec Warner - did the GSoC 2006 migration tests\nX-Thanks: Robin H. Johnson - infra guy, herding this project\nX-Thanks: Nguyen Thai Ngoc Duy - Former Gentoo developer, wrote Git features for the migration\nX-Thanks: Brian Harring - wrote much python to improve cvs2svn\nX-Thanks: Rich Freeman - validation scripts\nX-Thanks: Patrick Lauer - Gentoo dev, running new 2014 work in migration\nX-Thanks: Michał Górny - scripts, QA, nagging\nX-Thanks: All of other Gentoo developers - many ideas and lots of paint on the bikeshed","commitid":"56bd759df1d0c750a065b8c845e93d5dfa6b549d","committime":"2015-08-08T20:49:04","packageid":55065,"repoid":1,"summary":"proj\/gentoo: Initial commit"},{"authoremail":"repo-qa-checks@gentoo.org","authorname":"Repository QA checks","commitid":"a637bd65b7fef8e2be4e7fc6e9097479372e0e2e","committime":"2015-06-19T16:38:33","packageid":55065,"repoid":1,"summary":"2015-06-19 16:35:30 UTC"}],"dependencies":[],"depending":[{"block":false,"categoryid":353,"description":"An HMM-based microbial gene finding system from TIGR","ebuildids":[543991],"firstseen":"2010-05-04T00:54:45.661860","maintainer":"sci-biology@gentoo.org","maintainername":"Gentoo Biology Project","name":"glimmer","packageid":52050}],"ebuilds":[{"archs":["~amd64","~x86"],"ebuildid":798745,"firstseen":"2023-09-07T10:34:50.055362","license":"Artistic","moddate":"2026-03-22T20:20:57","packageid":55065,"repoid":1,"slot":"0","uses":[],"version":"1.0.1-r3"}],"masks":[],"package":{"categoryid":353,"description":"Estimated Locations of Pattern Hits - Motif finder program","firstseen":"2010-05-04T00:54:45.661860","maintainer":"sci-biology@gentoo.org","maintainername":"Gentoo Biology Project","name":"elph","packageid":55065,"summary":"ELPH is a general-purpose Gibbs sampler for finding motifs in a set of DNA or protein sequences. The program takes as input a set containing anywhere from a few dozen to thousands of sequences, and searches through them for the most common motif, assuming that each sequence contains one copy of the motif."},"rdependencies":[],"repos":[{"branch":"master","lastcommit":"52197549fd3431fa256b8edbafdcd3702dd0e134","name":"gentoo","path":"\/usr\/portage","repoid":1,"upstream":"origin"}],"tracked":false,"urls":["http:\/\/cbcb.umd.edu\/software\/ELPH\/"],"uses":[]}