Summary
ELPH is a general-purpose Gibbs sampler for finding motifs in a set of DNA or protein sequences. The program takes as input a set containing anywhere from a few dozen to thousands of sequences, and searches through them for the most common motif, assuming that each sequence contains one copy of the motif.
Versions
v1.0.1-r3 :: 0 :: gentoo
- Modified
- License
- Artistic
- Keywords
- ~amd64 ~amd64-linux ~ppc-macos ~x86 ~x86-linux
Depending packages
sci-biology / glimmer : An HMM-based microbial gene finding system from TIGR
Change logs
- Repository mirror & CI · gentoo
Merge updates from master - Brahmajit Das · gentoo
sci-biology/elph: Fix C++17 does not allow register storage class
Closes: https://github.com/gentoo/gentoo/pull/32664 Closes: https://bugs.gentoo.org/898116 Signed-off-by: Brahmajit Das <brahmajit.xyz@gmail.com> Signed-off-by: David Seifert <soap@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - David Seifert · gentoo
sci-biology/elph: update EAPI 6 -> 8
Signed-off-by: David Seifert <soap@gentoo.org> - David Seifert · gentoo
sci-biology/elph: Remove old
Package-Manager: Portage-2.3.4, Repoman-2.3.2 Closes: https://github.com/gentoo/gentoo/pull/4165 - David Seifert · gentoo
sci-biology/elph: Modernise to EAPI 6
Package-Manager: Portage-2.3.4, Repoman-2.3.2 - Robin H. Johnson · gentoo
Drop $Id$ per council decision in bug #611234.
Signed-off-by: Robin H. Johnson <robbat2@gentoo.org> - Robin H. Johnson · gentoo
proj/gentoo: Initial commit
This commit represents a new era for Gentoo: Storing the gentoo-x86 tree in Git, as converted from CVS. This commit is the start of the NEW history. Any historical data is intended to be grafted onto this point. Creation process: 1. Take final CVS checkout snapshot 2. Remove ALL ChangeLog* files 3. Transform all Manifests to thin 4. Remove empty Manifests 5. Convert all stale $Header$/$Id$ CVS keywords to non-expanded Git $Id$ 5.1. Do not touch files with -kb/-ko keyword flags. Signed-off-by: Robin H. Johnson <robbat2@gentoo.org> X-Thanks: Alec Warner <antarus@gentoo.org> - did the GSoC 2006 migration tests X-Thanks: Robin H. Johnson <robbat2@gentoo.org> - infra guy, herding this project X-Thanks: Nguyen Thai Ngoc Duy <pclouds@gentoo.org> - Former Gentoo developer, wrote Git features for the migration X-Thanks: Brian Harring <ferringb@gentoo.org> - wrote much python to improve cvs2svn X-Thanks: Rich Freeman <rich0@gentoo.org> - validation scripts X-Thanks: Patrick Lauer <patrick@gentoo.org> - Gentoo dev, running new 2014 work in migration X-Thanks: Michał Górny <mgorny@gentoo.org> - scripts, QA, nagging X-Thanks: All of other Gentoo developers - many ideas and lots of paint on the bikeshed