{"bugs":[{"bugid":930438,"firstseen":"2025-07-11T02:48:40.189262","severity":"normal","status":"CONFIRMED","summary":"sci-biology\/eugene-4.1d-r1 - OptiAlgorithm.cc: error: use of undeclared identifier setiosflags; did"}],"categories":[{"categoryid":438,"name":"media-libs","summary":"The media-libs category contains media-related libraries."},{"categoryid":353,"name":"sci-biology","summary":"The sci-biology category contains software that can be used in biological and related scientific environments."}],"changelog":[{"authoremail":"repomirrorci@gentoo.org","authorname":"Repository mirror & CI","commitid":"f2979793991144637956e4225ce4d0235900c1a2","committime":"2023-06-09T15:16:56","packageid":41818,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"arthurzam@gentoo.org","authorname":"Arthur Zamarin","body":"Signed-off-by: Arthur Zamarin ","commitid":"2caf9db9b34b93c28f09c64c88aafacbeb3ed603","committime":"2023-06-03T14:45:54","packageid":41818,"repoid":1,"summary":"sci-biology\/eugene: destabilize for ~x86"},{"authoremail":"repomirrorci@gentoo.org","authorname":"Repository mirror & CI","commitid":"59c141313a357a9030ebf5ea9411c95ba6f709c7","committime":"2022-10-23T19:31:46","packageid":41818,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"soap@gentoo.org","authorname":"David Seifert","body":"Closes: https:\/\/bugs.gentoo.org\/875476\nSigned-off-by: David Seifert ","commitid":"fb20e3f85e6e158e7f3a13b5de473ccaba372a03","committime":"2022-10-23T19:18:05","packageid":41818,"repoid":1,"summary":"sci-biology\/eugene: fix clang 16 build"},{"authoremail":"repomirrorci@gentoo.org","authorname":"Repository mirror & CI","commitid":"af6f0e8ef0bcb907ba1d0760fbc87f04990100a3","committime":"2022-07-07T20:01:37","packageid":41818,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"soap@gentoo.org","authorname":"David Seifert","body":"Closes: https:\/\/bugs.gentoo.org\/829816\nSigned-off-by: David Seifert ","commitid":"25a6332f19e64bb862a5543f7453629781b511ce","committime":"2022-07-07T19:56:53","packageid":41818,"repoid":1,"summary":"sci-biology\/eugene: update EAPI 6 -> 8"},{"authoremail":"repo-qa-checks@gentoo.org","authorname":"Repository QA checks","commitid":"44b888b6210706b739a0cd57a30f22a6a9424c86","committime":"2017-09-30T04:53:07","packageid":41818,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"kensington@gentoo.org","authorname":"Michael Palimaka","body":"Package-Manager: Portage-2.3.8, Repoman-2.3.3","commitid":"9c27b6a1f88fc551e313a2788e1e65ac5220d01b","committime":"2017-09-30T04:37:56","packageid":41818,"repoid":1,"summary":"sci-biology\/eugene: remove 4.1"},{"authoremail":"kensington@gentoo.org","authorname":"Michael Palimaka","body":"Closes: https:\/\/bugs.gentoo.org\/632358\nPackage-Manager: Portage-2.3.8, Repoman-2.3.3","commitid":"de74eca1cad7030e0afac9af2dd4a66bc02101dd","committime":"2017-09-30T04:37:25","packageid":41818,"repoid":1,"summary":"sci-biology\/eugene: stabilise 4.1d for amd64\/x86"},{"authoremail":"repo-qa-checks@gentoo.org","authorname":"Repository QA checks","commitid":"25093d6359f778b8d1052f66ba9e26fc29ded21a","committime":"2017-02-28T20:35:29","packageid":41818,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"robbat2@gentoo.org","authorname":"Robin H. Johnson","body":"Signed-off-by: Robin H. Johnson ","commitid":"61b861acd7b49083dab687e133f30f3331cb7480","committime":"2017-02-28T19:47:27","packageid":41818,"repoid":1,"summary":"Drop $Id$ per council decision in bug #611234."},{"authoremail":"repo-qa-checks@gentoo.org","authorname":"Repository QA checks","commitid":"17b918835ed9aef306bf6e53967608e9292ae47d","committime":"2016-09-24T19:25:11","packageid":41818,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"soap@gentoo.org","authorname":"David Seifert","body":"Gentoo-bug: 594700\n* EAPI=6\n* Fix -Wformat warnings\n\nPackage-Manager: portage-2.3.1","commitid":"5bd35d2287f51fa70024ffc977d34d8e15d8a168","committime":"2016-09-24T14:20:44","packageid":41818,"repoid":1,"summary":"sci-biology\/eugene: Bump to 4.1d from science-overlay"},{"authoremail":"repo-qa-checks@gentoo.org","authorname":"Repository QA checks","commitid":"945f0d2a26da4f944fd06ad6a874f69d37ce1e06","committime":"2015-08-09T09:26:46","packageid":41818,"repoid":1,"summary":"2015-08-09 09:26:21 UTC"},{"authoremail":"robbat2@gentoo.org","authorname":"Robin H. Johnson","body":"This commit represents a new era for Gentoo:\nStoring the gentoo-x86 tree in Git, as converted from CVS.\n\nThis commit is the start of the NEW history.\nAny historical data is intended to be grafted onto this point.\n\nCreation process:\n1. Take final CVS checkout snapshot\n2. Remove ALL ChangeLog* files\n3. Transform all Manifests to thin\n4. Remove empty Manifests\n5. Convert all stale $Header$\/$Id$ CVS keywords to non-expanded Git $Id$\n5.1. Do not touch files with -kb\/-ko keyword flags.\n\nSigned-off-by: Robin H. Johnson \nX-Thanks: Alec Warner - did the GSoC 2006 migration tests\nX-Thanks: Robin H. Johnson - infra guy, herding this project\nX-Thanks: Nguyen Thai Ngoc Duy - Former Gentoo developer, wrote Git features for the migration\nX-Thanks: Brian Harring - wrote much python to improve cvs2svn\nX-Thanks: Rich Freeman - validation scripts\nX-Thanks: Patrick Lauer - Gentoo dev, running new 2014 work in migration\nX-Thanks: Michał Górny - scripts, QA, nagging\nX-Thanks: All of other Gentoo developers - many ideas and lots of paint on the bikeshed","commitid":"56bd759df1d0c750a065b8c845e93d5dfa6b549d","committime":"2015-08-08T20:49:04","packageid":41818,"repoid":1,"summary":"proj\/gentoo: Initial commit"},{"authoremail":"repo-qa-checks@gentoo.org","authorname":"Repository QA checks","commitid":"a637bd65b7fef8e2be4e7fc6e9097479372e0e2e","committime":"2015-06-19T16:38:33","packageid":41818,"repoid":1,"summary":"2015-06-19 16:35:30 UTC"}],"dependencies":[{"block":false,"categoryid":438,"description":"Portable Network Graphics library","ebuildids":[755461],"firstseen":"2010-05-04T00:54:45.661860","maintainer":"base-system@gentoo.org","maintainername":"Gentoo Base System","name":"libpng","packageid":49028},{"block":false,"categoryid":438,"description":"Graphics library for fast image creation","ebuildids":[755461],"firstseen":"2010-05-04T00:54:45.661860","maintainer":"vapier@gentoo.org","maintainername":"Gentoo Graphics Project","name":"gd","packageid":53143,"summary":"gd is a graphics library. It allows your code to quickly draw images complete with lines, arcs, text, multiple colors, cut and paste from other images, and flood fills, and write out the result as a PNG or JPEG file. This is particularly useful in World Wide Web applications, where PNG and JPEG are two of the formats accepted for inline images by most browsers. gd is not a paint program. If you are looking for a paint program, you are looking in the wrong place. If you are not a programmer, you are looking in the wrong place, unless you are installing a required library in order to run an application. gd does not provide for every possible desirable graphics operation. It is not necessary or desirable for gd to become a kitchen-sink graphics package, but version 2.0 does include most frequently requested features, including both truecolor and palette images, resampling (smooth resizing of truecolor images) and so forth."}],"depending":[],"ebuilds":[{"archs":["amd64","~x86"],"ebuildid":755461,"firstseen":"2022-07-07T21:10:47.213865","license":"Artistic","moddate":"2026-03-22T20:20:57","packageid":41818,"repoid":1,"slot":"0","uses":[],"version":"4.1d-r1"}],"masks":[],"package":{"categoryid":353,"description":"Prokaryotic and Eukaryotic gene predictor","firstseen":"2010-05-04T00:54:45.661860","maintainer":"sci-biology@gentoo.org","maintainername":"Gentoo Biology Project","name":"eugene","packageid":41818},"rdependencies":[{"block":false,"categoryid":438,"description":"Portable Network Graphics library","ebuildids":[755461],"firstseen":"2010-05-04T00:54:45.661860","maintainer":"base-system@gentoo.org","maintainername":"Gentoo Base System","name":"libpng","packageid":49028},{"block":false,"categoryid":438,"description":"Graphics library for fast image creation","ebuildids":[755461],"firstseen":"2010-05-04T00:54:45.661860","maintainer":"vapier@gentoo.org","maintainername":"Gentoo Graphics Project","name":"gd","packageid":53143,"summary":"gd is a graphics library. It allows your code to quickly draw images complete with lines, arcs, text, multiple colors, cut and paste from other images, and flood fills, and write out the result as a PNG or JPEG file. This is particularly useful in World Wide Web applications, where PNG and JPEG are two of the formats accepted for inline images by most browsers. gd is not a paint program. If you are looking for a paint program, you are looking in the wrong place. If you are not a programmer, you are looking in the wrong place, unless you are installing a required library in order to run an application. gd does not provide for every possible desirable graphics operation. It is not necessary or desirable for gd to become a kitchen-sink graphics package, but version 2.0 does include most frequently requested features, including both truecolor and palette images, resampling (smooth resizing of truecolor images) and so forth."}],"repos":[{"branch":"master","lastcommit":"52197549fd3431fa256b8edbafdcd3702dd0e134","name":"gentoo","path":"\/usr\/portage","repoid":1,"upstream":"origin"}],"tracked":false,"urls":["http:\/\/eugene.toulouse.inra.fr\/"],"uses":[]}