{"bugs":[],"categories":[{"categoryid":393,"name":"dev-libs","summary":"The dev-libs category contains various miscellaneous programming libraries."},{"categoryid":353,"name":"sci-biology","summary":"The sci-biology category contains software that can be used in biological and related scientific environments."}],"changelog":[{"authoremail":"repomirrorci@gentoo.org","authorname":"Repository mirror & CI","commitid":"b082176271c4f0d63a97962e4b75785991196236","committime":"2025-12-17T15:16:13","packageid":52203,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"grobian@gentoo.org","authorname":"Fabian Groffen","body":"The arch and OS that matches it are obsolete.\n\nSigned-off-by: Fabian Groffen ","commitid":"0a7ffce789e36042bac35ea5e0b8b2b654e5b490","committime":"2025-12-17T15:07:23","packageid":52203,"repoid":1,"summary":"*: remove ppc-macos keyword"},{"authoremail":"repomirrorci@gentoo.org","authorname":"Repository mirror & CI","commitid":"4f7b0dd09b78addc65c9984b733740ba672d03bd","committime":"2024-02-29T02:34:00","packageid":52203,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"eschwartz93@gmail.com","authorname":"Eli Schwartz","body":"Closes: https:\/\/bugs.gentoo.org\/862264\nSigned-off-by: Eli Schwartz \nSigned-off-by: Sam James ","commitid":"f90551a4ff3929b105533112036b88f82069c427","committime":"2024-02-29T02:12:25","packageid":52203,"repoid":1,"summary":"sci-biology\/exonerate: mark LTO-unsafe"},{"authoremail":"repomirrorci@gentoo.org","authorname":"Repository mirror & CI","commitid":"6a73593a58d469c462b5ed8b89a44291f1a463b3","committime":"2022-08-23T12:16:54","packageid":52203,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"mmk@levelnine.at","authorname":"Michael Mair-Keimberger","body":"Signed-off-by: Michael Mair-Keimberger \nPortage 3.0.34 \/ pkgdev 0.2.1 \/ pkgcheck 0.10.11\nSigned-off-by: Andrew Ammerlaan ","commitid":"1efe4002add83573a9bb415d220c9718184b8edf","committime":"2022-08-02T17:06:17","packageid":52203,"repoid":1,"summary":"sci-biology\/exonerate: use HTTPS"},{"authoremail":"repomirrorci@gentoo.org","authorname":"Repository mirror & CI","commitid":"af6f0e8ef0bcb907ba1d0760fbc87f04990100a3","committime":"2022-07-07T20:01:37","packageid":52203,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"soap@gentoo.org","authorname":"David Seifert","body":"Closes: https:\/\/bugs.gentoo.org\/600766\nSigned-off-by: David Seifert ","commitid":"63b15e9dd17c41d7c4b6827e794854ca58169d56","committime":"2022-07-07T19:56:54","packageid":52203,"repoid":1,"summary":"sci-biology\/exonerate: update EAPI 6 -> 8"},{"authoremail":"repomirrorci@gentoo.org","authorname":"Repository mirror & CI","commitid":"fef742528aacdd4ffa4e59ea0354106ca161650e","committime":"2019-12-10T23:48:11","packageid":52203,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"mgorny@gentoo.org","authorname":"Michał Górny","body":"The result was achieved via the following pipeline:\n\n pkgcheck scan -c RestrictTestCheck -R FormatReporter \\\n --format '{category}\/{package}\/{package}-{version}.ebuild' |\n xargs -n32 grep -L RESTRICT |\n xargs -n32 sed -i -e '\/^IUSE=.*test\/aRESTRICT=\"!test? ( test )\"'\n\nThe resulting metadata was compared before and after the change.\nFew Go ebuilds had to be fixed manually due to implicit RESTRICT=strip\nadded by the eclass. Two ebuilds have to be fixed because of multiline\nIUSE.\n\nSuggested-by: Robin H. Johnson \nCloses: https:\/\/github.com\/gentoo\/gentoo\/pull\/13942\nSigned-off-by: Michał Górny ","commitid":"064af661d0c9a31cecdf348632bc5603333a9149","committime":"2019-12-10T22:02:54","packageid":52203,"repoid":1,"summary":"*\/*: [QA] Fix trivial cases of MissingTestRestrict"},{"authoremail":"repo-qa-checks@gentoo.org","authorname":"Repository QA checks","commitid":"25093d6359f778b8d1052f66ba9e26fc29ded21a","committime":"2017-02-28T20:35:29","packageid":52203,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"robbat2@gentoo.org","authorname":"Robin H. Johnson","body":"Signed-off-by: Robin H. Johnson ","commitid":"61b861acd7b49083dab687e133f30f3331cb7480","committime":"2017-02-28T19:47:27","packageid":52203,"repoid":1,"summary":"Drop $Id$ per council decision in bug #611234."},{"authoremail":"repo-qa-checks@gentoo.org","authorname":"Repository QA checks","commitid":"49829e36b481cb31e1490389a117b8d22e3b82ca","committime":"2017-02-25T16:02:09","packageid":52203,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"soap@gentoo.org","authorname":"David Seifert","body":"Package-Manager: Portage-2.3.3, Repoman-2.3.1","commitid":"e5ce74fb32afe018ef0d58ff9bfb8192abb62019","committime":"2017-02-25T15:46:24","packageid":52203,"repoid":1,"summary":"sci-biology\/exonerate: Modernise to EAPI 6"},{"authoremail":"repo-qa-checks@gentoo.org","authorname":"Repository QA checks","commitid":"945f0d2a26da4f944fd06ad6a874f69d37ce1e06","committime":"2015-08-09T09:26:46","packageid":52203,"repoid":1,"summary":"2015-08-09 09:26:21 UTC"},{"authoremail":"robbat2@gentoo.org","authorname":"Robin H. Johnson","body":"This commit represents a new era for Gentoo:\nStoring the gentoo-x86 tree in Git, as converted from CVS.\n\nThis commit is the start of the NEW history.\nAny historical data is intended to be grafted onto this point.\n\nCreation process:\n1. Take final CVS checkout snapshot\n2. Remove ALL ChangeLog* files\n3. Transform all Manifests to thin\n4. Remove empty Manifests\n5. Convert all stale $Header$\/$Id$ CVS keywords to non-expanded Git $Id$\n5.1. Do not touch files with -kb\/-ko keyword flags.\n\nSigned-off-by: Robin H. Johnson \nX-Thanks: Alec Warner - did the GSoC 2006 migration tests\nX-Thanks: Robin H. Johnson - infra guy, herding this project\nX-Thanks: Nguyen Thai Ngoc Duy - Former Gentoo developer, wrote Git features for the migration\nX-Thanks: Brian Harring - wrote much python to improve cvs2svn\nX-Thanks: Rich Freeman - validation scripts\nX-Thanks: Patrick Lauer - Gentoo dev, running new 2014 work in migration\nX-Thanks: Michał Górny - scripts, QA, nagging\nX-Thanks: All of other Gentoo developers - many ideas and lots of paint on the bikeshed","commitid":"56bd759df1d0c750a065b8c845e93d5dfa6b549d","committime":"2015-08-08T20:49:04","packageid":52203,"repoid":1,"summary":"proj\/gentoo: Initial commit"},{"authoremail":"repo-qa-checks@gentoo.org","authorname":"Repository QA checks","commitid":"a637bd65b7fef8e2be4e7fc6e9097479372e0e2e","committime":"2015-06-19T16:38:33","packageid":52203,"repoid":1,"summary":"2015-06-19 16:35:30 UTC"}],"dependencies":[{"block":false,"categoryid":393,"description":"The GLib library of C routines","ebuildids":[755462],"firstseen":"2010-05-04T00:54:45.661860","maintainer":"gnome@gentoo.org","maintainername":"Gentoo GNOME Desktop","name":"glib","packageid":47581}],"depending":[],"ebuilds":[{"archs":["~amd64","~x64-macos","~x86"],"ebuildid":755462,"firstseen":"2022-07-07T21:10:47.213865","license":"GPL-3","moddate":"2026-03-22T20:20:57","packageid":52203,"repoid":1,"slot":"0","uses":["test","utils"],"version":"2.2.0-r3"}],"masks":[],"package":{"categoryid":353,"description":"Generic tool for pairwise sequence comparison","firstseen":"2010-05-04T00:54:45.661860","maintainer":"sci-biology@gentoo.org","maintainername":"Gentoo Biology Project","name":"exonerate","packageid":52203},"rdependencies":[{"block":false,"categoryid":393,"description":"The GLib library of C routines","ebuildids":[755462],"firstseen":"2010-05-04T00:54:45.661860","maintainer":"gnome@gentoo.org","maintainername":"Gentoo GNOME Desktop","name":"glib","packageid":47581}],"repos":[{"branch":"master","lastcommit":"52197549fd3431fa256b8edbafdcd3702dd0e134","name":"gentoo","path":"\/usr\/portage","repoid":1,"upstream":"origin"}],"tracked":false,"urls":["https:\/\/www.ebi.ac.uk\/about\/vertebrate-genomics\/software\/exonerate"],"uses":[{"description":"Enable dependencies and\/or preparations necessary to run tests (usually controlled by FEATURES=test but can be toggled independently)","isdefault":false,"use":"test"},{"description":"Install the follow binaries: esd2esi, fasta2esd, fastaannotatecdna, fastachecksum, fastaclean, fastaclip, fastacomposition, fastadiff, fastaexplode, fastafetch, fastahardmask, fastaindex, fastalength, fastanrdb, fastaoverlap, fastareformat, fastaremove, fastarevcomp, fastasoftmask, fastasort, fastasplit, fastasubseq, fastatranslate, fastavalidcds","isdefault":false,"packageid":52203,"use":"utils"}]}