sci-biology / fasta

FASTA is a DNA and Protein sequence alignment software package

Official package sites : https://fasta.bioch.virginia.edu/fasta_www2/fasta_down.shtml ·

v36.3.8h-r1 :: 0 :: gentoo

Modified
License
fasta
Keywords
~amd64 ~amd64-linux ~ppc ~x64-macos ~x86 ~x86-linux
USE flags
debug test

General

debug
Enable extra debug codepaths, like asserts and extra output. If you want to get meaningful backtraces see https://wiki.gentoo.org/wiki/Project:Quality_Assurance/Backtraces
test
Enable dependencies and/or preparations necessary to run tests (usually controlled by FEATURES=test but can be toggled independently)

cpu_flags_x86

sse2
Use the SSE2 instruction set
862267
sci-biology/fasta-36.3.8h-r1 fails to compile (lto): compacc2e.c:954:1: error: type of [-Werror=lto-type-mismatch]
890417
sci-biology/fasta-36.3.8h-r1 fails to compile (DASH-SYSTEM): comp_lib9.c:(.text+0xad6): undefined reference to adler32
Repository mirror & CI · gentoo
Merge updates from master
Sam James · gentoo
sci-biology/fasta: [QA] fix tc-get* quoting
This can cause build problems for e.g. 32-bit (gcc -m32 ...) Signed-off-by: Sam James <sam@gentoo.org>
Repository mirror & CI · gentoo
Merge updates from master
David Seifert · gentoo
sci-biology/fasta: fix broken README symlink
Closes: https://bugs.gentoo.org/835634 Signed-off-by: David Seifert <soap@gentoo.org>
Repository mirror & CI · gentoo
Merge updates from master
David Seifert · gentoo
sci-biology/fasta: drop 36.3.5e
Closes: https://bugs.gentoo.org/648618 Closes: https://bugs.gentoo.org/828700 Signed-off-by: David Seifert <soap@gentoo.org>
David Seifert · gentoo
sci-biology/fasta: add 36.3.8h
Bug: https://bugs.gentoo.org/648618 Bug: https://bugs.gentoo.org/828700 Signed-off-by: David Seifert <soap@gentoo.org>
Repository mirror & CI · gentoo
Merge updates from master
Sam James · gentoo
sci-biology/fasta: eutils->epatch
Package-Manager: Portage-3.0.14-prefix, Repoman-3.0.2 Signed-off-by: Sam James <sam@gentoo.org>
Repository mirror & CI · gentoo
Merge updates from master
Fabian Groffen · gentoo
sci-biology/fasta: drop x86-macos
Package-Manager: Portage-3.0.12, Repoman-3.0.2 Signed-off-by: Fabian Groffen <grobian@gentoo.org>
Repository mirror & CI · gentoo
Merge updates from master
David Seifert · gentoo
*/*: [QA] Remove redundant `|| die` guards
* Since all ebuilds in the tree are EAPI>=4, `|| die` on builtin commands is redundant and dead code. Closes: https://github.com/gentoo/gentoo/pull/13940 Reviewed-by: Ulrich Müller <ulm@gentoo.org> Reviewed-by: Michał Górny <mgorny@gentoo.org> Reviewed-by: Andreas K. Hüttel <dilfridge@gentoo.org> Signed-off-by: David Seifert <soap@gentoo.org>
Repository mirror & CI · gentoo
Merge updates from master
Michał Górny · gentoo
*/*: [QA] Fix trivial cases of MissingTestRestrict
The result was achieved via the following pipeline: pkgcheck scan -c RestrictTestCheck -R FormatReporter \ --format '{category}/{package}/{package}-{version}.ebuild' | xargs -n32 grep -L RESTRICT | xargs -n32 sed -i -e '/^IUSE=.*test/aRESTRICT="!test? ( test )"' The resulting metadata was compared before and after the change. Few Go ebuilds had to be fixed manually due to implicit RESTRICT=strip added by the eclass. Two ebuilds have to be fixed because of multiline IUSE. Suggested-by: Robin H. Johnson <robbat2@gentoo.org> Closes: https://github.com/gentoo/gentoo/pull/13942 Signed-off-by: Michał Górny <mgorny@gentoo.org>
Michael Mair-Keimberger · gentoo
sci-biology/fasta: use HTTPs
Closes: https://github.com/gentoo/gentoo/pull/8513
David Seifert · gentoo
sci-biology/fasta: Remove old
Package-Manager: Portage-2.3.19, Repoman-2.3.6
Robin H. Johnson · gentoo
Drop $Id$ per council decision in bug #611234.
Signed-off-by: Robin H. Johnson <robbat2@gentoo.org>
Robin H. Johnson · gentoo
proj/gentoo: Initial commit
This commit represents a new era for Gentoo: Storing the gentoo-x86 tree in Git, as converted from CVS. This commit is the start of the NEW history. Any historical data is intended to be grafted onto this point. Creation process: 1. Take final CVS checkout snapshot 2. Remove ALL ChangeLog* files 3. Transform all Manifests to thin 4. Remove empty Manifests 5. Convert all stale $Header$/$Id$ CVS keywords to non-expanded Git $Id$ 5.1. Do not touch files with -kb/-ko keyword flags. Signed-off-by: Robin H. Johnson <robbat2@gentoo.org> X-Thanks: Alec Warner <antarus@gentoo.org> - did the GSoC 2006 migration tests X-Thanks: Robin H. Johnson <robbat2@gentoo.org> - infra guy, herding this project X-Thanks: Nguyen Thai Ngoc Duy <pclouds@gentoo.org> - Former Gentoo developer, wrote Git features for the migration X-Thanks: Brian Harring <ferringb@gentoo.org> - wrote much python to improve cvs2svn X-Thanks: Rich Freeman <rich0@gentoo.org> - validation scripts X-Thanks: Patrick Lauer <patrick@gentoo.org> - Gentoo dev, running new 2014 work in migration X-Thanks: Michał Górny <mgorny@gentoo.org> - scripts, QA, nagging X-Thanks: All of other Gentoo developers - many ideas and lots of paint on the bikeshed