{"bugs":[{"bugid":794868,"firstseen":"2025-07-11T02:48:40.189262","severity":"normal","status":"CONFIRMED","summary":"sci-biology\/fasttree-2.1.11 - FastTree-2.1.11.c:(.text+): undefined reference to mm_sum"}],"categories":[{"categoryid":353,"name":"sci-biology","summary":"The sci-biology category contains software that can be used in biological and related scientific environments."}],"changelog":[{"authoremail":"repomirrorci@gentoo.org","authorname":"Repository mirror & CI","commitid":"588582e87545a40920cddcdf54366b486a930494","committime":"2025-09-30T05:03:38","packageid":50611,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"asturm@gentoo.org","authorname":"Andreas Sturmlechner","body":"Closes: https:\/\/bugs.gentoo.org\/953853\nCloses: https:\/\/bugs.gentoo.org\/957242\nSigned-off-by: Andreas Sturmlechner ","commitid":"916a7e79337d1323a1541f2049ead10153c02541","committime":"2025-09-29T20:07:33","packageid":50611,"repoid":1,"summary":"sci-biology\/fasttree: update EAPI 7 -> 8"},{"authoremail":"repomirrorci@gentoo.org","authorname":"Repository mirror & CI","commitid":"cc30be1f0a0f9cbf0aeeeb8652bb3dd2d5a493a2","committime":"2021-03-07T19:05:47","packageid":50611,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"asturm@gentoo.org","authorname":"Andreas Sturmlechner","body":"Package-Manager: Portage-3.0.16, Repoman-3.0.2\nSigned-off-by: Andreas Sturmlechner ","commitid":"36c8ba7f8501ebe4fd3988a5d65db5ccf1deea98","committime":"2021-03-07T16:23:00","packageid":50611,"repoid":1,"summary":"sci-biology\/fasttree: Drop 2.1.8"},{"authoremail":"asturm@gentoo.org","authorname":"Andreas Sturmlechner","body":"Closes: https:\/\/bugs.gentoo.org\/594364\nPackage-Manager: Portage-3.0.16, Repoman-3.0.2\nSigned-off-by: Andreas Sturmlechner ","commitid":"78fa7b612b071489cb9c259d639f61ab654b9c78","committime":"2021-03-07T16:22:22","packageid":50611,"repoid":1,"summary":"sci-biology\/fasttree: 2.1.11 version bump, EAPI-7, cmake.eclass"},{"authoremail":"repomirrorci@gentoo.org","authorname":"Repository mirror & CI","commitid":"b4626ca47b919f81cf991d53b8fb406409a98133","committime":"2018-10-14T16:44:01","packageid":50611,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"asturm@gentoo.org","authorname":"Andreas Sturmlechner","body":"Signed-off-by: Andreas Sturmlechner \nPackage-Manager: Portage-2.3.51, Repoman-2.3.11","commitid":"3ea6a505ae3bfa74715b81a5ef39b726cc4abbe7","committime":"2018-10-14T16:32:42","packageid":50611,"repoid":1,"summary":"sci-biology\/fasttree: Drop 2.1.7"},{"authoremail":"repo-qa-checks@gentoo.org","authorname":"Repository QA checks","commitid":"25093d6359f778b8d1052f66ba9e26fc29ded21a","committime":"2017-02-28T20:35:29","packageid":50611,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"robbat2@gentoo.org","authorname":"Robin H. Johnson","body":"Signed-off-by: Robin H. Johnson ","commitid":"61b861acd7b49083dab687e133f30f3331cb7480","committime":"2017-02-28T19:47:27","packageid":50611,"repoid":1,"summary":"Drop $Id$ per council decision in bug #611234."},{"authoremail":"repo-qa-checks@gentoo.org","authorname":"Repository QA checks","commitid":"945f0d2a26da4f944fd06ad6a874f69d37ce1e06","committime":"2015-08-09T09:26:46","packageid":50611,"repoid":1,"summary":"2015-08-09 09:26:21 UTC"},{"authoremail":"robbat2@gentoo.org","authorname":"Robin H. Johnson","body":"This commit represents a new era for Gentoo:\nStoring the gentoo-x86 tree in Git, as converted from CVS.\n\nThis commit is the start of the NEW history.\nAny historical data is intended to be grafted onto this point.\n\nCreation process:\n1. Take final CVS checkout snapshot\n2. Remove ALL ChangeLog* files\n3. Transform all Manifests to thin\n4. Remove empty Manifests\n5. Convert all stale $Header$\/$Id$ CVS keywords to non-expanded Git $Id$\n5.1. Do not touch files with -kb\/-ko keyword flags.\n\nSigned-off-by: Robin H. Johnson \nX-Thanks: Alec Warner - did the GSoC 2006 migration tests\nX-Thanks: Robin H. Johnson - infra guy, herding this project\nX-Thanks: Nguyen Thai Ngoc Duy - Former Gentoo developer, wrote Git features for the migration\nX-Thanks: Brian Harring - wrote much python to improve cvs2svn\nX-Thanks: Rich Freeman - validation scripts\nX-Thanks: Patrick Lauer - Gentoo dev, running new 2014 work in migration\nX-Thanks: Michał Górny - scripts, QA, nagging\nX-Thanks: All of other Gentoo developers - many ideas and lots of paint on the bikeshed","commitid":"56bd759df1d0c750a065b8c845e93d5dfa6b549d","committime":"2015-08-08T20:49:04","packageid":50611,"repoid":1,"summary":"proj\/gentoo: Initial commit"},{"authoremail":"repo-qa-checks@gentoo.org","authorname":"Repository QA checks","commitid":"a637bd65b7fef8e2be4e7fc6e9097479372e0e2e","committime":"2015-06-19T16:38:33","packageid":50611,"repoid":1,"summary":"2015-06-19 16:35:30 UTC"}],"dependencies":[],"depending":[],"ebuilds":[{"archs":["~amd64","~x86"],"ebuildid":705433,"firstseen":"2021-03-07T19:13:40.475745","license":"GPL-2","moddate":"2026-03-28T18:04:21","packageid":50611,"repoid":1,"slot":"0","uses":["cpu_flags_x86_sse3","double-precision","openmp"],"version":"2.1.11"}],"masks":[],"package":{"categoryid":353,"description":"Fast inference of approximately-maximum-likelihood phylogenetic trees","firstseen":"2010-05-04T00:54:45.661860","maintainer":"sci-biology@gentoo.org","maintainername":"Gentoo Biology Project","name":"fasttree","packageid":50611},"rdependencies":[],"repos":[{"branch":"master","lastcommit":"52197549fd3431fa256b8edbafdcd3702dd0e134","name":"gentoo","path":"\/usr\/portage","repoid":1,"upstream":"origin"}],"tracked":false,"urls":["https:\/\/morgannprice.github.io\/fasttree\/"],"uses":[{"description":"use double precision instead of single-precision floating point (2x memroy required)","isdefault":false,"packageid":50611,"use":"double-precision"},{"description":"Build support for the OpenMP (support parallel computing), requires >=sys-devel\/gcc-4.2 built with USE=\"openmp\"","isdefault":false,"use":"openmp"},{"description":"Use the SSE3 instruction set ([pni] in cpuinfo, NOT ssse3)","group":"cpu_flags_x86","isdefault":false,"use":"sse3"}]}