sci-biology / gatk

The Genome Analysis Toolkit

Official package sites : http://www.broadinstitute.org/gsa/wiki/index.php/The_Genome_Analysis_Toolkit ·

v9999 :: 0 :: gentoo

Modified
License
MIT

v2.4 :: 0 :: gentoo

Modified
License
MIT
Keywords
~amd64

elibc

FreeBSD
ELIBC setting for systems that use the FreeBSD C library

dev-java / ant-core : Java-based build tool similar to 'make' that uses XML configuration files

dev-java / java-config : Java environment configuration query tool

dev-java / javatoolkit : Collection of Gentoo-specific tools for Java

dev-vcs / git : stupid content tracker: distributed VCS designed for speed and efficiency

virtual / jdk : Virtual for Java Development Kit (JDK)

dev-java / java-config : Java environment configuration query tool

virtual / jre : Virtual for Java Runtime Environment (JRE)

418625
sci-biology/gatk-1.5: error: name clash: sum(Collection<Integer>) and sum(Collection<Number>) have the same erasure
431644
sci-biology/gatk-1.5: fails to build without network connection
515816
sci-biology/gatk-2.4 fails to build if git is not installed
542940
sci-biology/gatk-3.3 version bump
574632
sci-biology/gatk-2.4 : [get] Error getting http://repo1.maven.org/maven2/org/apache/ivy/ivy/2.2.0/ivy-2.2.0.jar to /var/tmp/portage/sci-biology/gatk-2.4/work/.ant/lib/ivy-2.2.0.jar
581818
sci-biology/gatk-2.4 : /.../build.xml:276: Execute failed: java.io.IOException: Cannot run program git : error=2, No such file or directory
672152
ERROR: sci-biology/gatk-2.4::gentoo failed (compile phase): * eant failed
Robin H. Johnson · gentoo
Drop $Id$ per council decision in bug #611234.
Signed-off-by: Robin H. Johnson <robbat2@gentoo.org>
Robin H. Johnson · gentoo
proj/gentoo: Initial commit
This commit represents a new era for Gentoo: Storing the gentoo-x86 tree in Git, as converted from CVS. This commit is the start of the NEW history. Any historical data is intended to be grafted onto this point. Creation process: 1. Take final CVS checkout snapshot 2. Remove ALL ChangeLog* files 3. Transform all Manifests to thin 4. Remove empty Manifests 5. Convert all stale $Header$/$Id$ CVS keywords to non-expanded Git $Id$ 5.1. Do not touch files with -kb/-ko keyword flags. Signed-off-by: Robin H. Johnson <robbat2@gentoo.org> X-Thanks: Alec Warner <antarus@gentoo.org> - did the GSoC 2006 migration tests X-Thanks: Robin H. Johnson <robbat2@gentoo.org> - infra guy, herding this project X-Thanks: Nguyen Thai Ngoc Duy <pclouds@gentoo.org> - Former Gentoo developer, wrote Git features for the migration X-Thanks: Brian Harring <ferringb@gentoo.org> - wrote much python to improve cvs2svn X-Thanks: Rich Freeman <rich0@gentoo.org> - validation scripts X-Thanks: Patrick Lauer <patrick@gentoo.org> - Gentoo dev, running new 2014 work in migration X-Thanks: Michał Górny <mgorny@gentoo.org> - scripts, QA, nagging X-Thanks: All of other Gentoo developers - many ideas and lots of paint on the bikeshed