{"bugs":[{"bugid":926804,"firstseen":"2025-07-11T02:48:40.189262","severity":"normal","status":"CONFIRMED","summary":"sci-biology\/glimmerhmm-3.0.4 does not respect LDFLAGS"},{"bugid":926805,"firstseen":"2025-07-11T02:48:40.189262","severity":"normal","status":"CONFIRMED","summary":"sci-biology\/glimmerhmm-3.0.4 does not respect CFLAGS"},{"bugid":927871,"firstseen":"2025-07-11T02:48:40.189262","severity":"normal","status":"CONFIRMED","summary":"sci-biology\/glimmerhmm-3.0.4 installs files with unresolved SONAME dependencies"}],"categories":[{"categoryid":353,"name":"sci-biology","summary":"The sci-biology category contains software that can be used in biological and related scientific environments."}],"changelog":[{"authoremail":"repomirrorci@gentoo.org","authorname":"Repository mirror & CI","commitid":"fd19d21addb902ce2c60c4fc7cbc8dc61eb69fb8","committime":"2024-12-03T11:18:31","packageid":51757,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"sam@gentoo.org","authorname":"Sam James","body":"Signed-off-by: Sam James ","commitid":"165cb771c4cb703d605768978985385ab31f547b","committime":"2024-12-03T11:14:05","packageid":51757,"repoid":1,"summary":"sci-biology\/glimmerhmm: Stabilize 3.0.4 amd64, #945559"},{"authoremail":"repomirrorci@gentoo.org","authorname":"Repository mirror & CI","commitid":"e3dd1fe33cc8dcaa7fd4f82ca1f02ae22952bd27","committime":"2024-03-12T06:33:47","packageid":51757,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"sam@gentoo.org","authorname":"Sam James","body":"Signed-off-by: Sam James ","commitid":"1286481b0c4807a0321ce180307d21b08de210db","committime":"2024-03-12T06:21:45","packageid":51757,"repoid":1,"summary":"sci-biology\/glimmerhmm: update EAPI 7 -> 8"},{"authoremail":"sam@gentoo.org","authorname":"Sam James","body":"Signed-off-by: Sam James ","commitid":"a708698f295cda8e488d19dbb57fb2a3680a0b46","committime":"2024-03-12T06:16:20","packageid":51757,"repoid":1,"summary":"sci-biology\/glimmerhmm: fix SRC_URI"},{"authoremail":"eschwartz93@gmail.com","authorname":"Eli Schwartz","body":"This is the 2015 release so about time we packaged it, I suppose.\n\nSigned-off-by: Eli Schwartz \nSigned-off-by: Sam James ","commitid":"b7276d097d4681637d7b2dcc0514835e64d736a4","committime":"2024-03-12T05:55:24","packageid":51757,"repoid":1,"summary":"sci-biology\/glimmerhmm: add 3.0.4"},{"authoremail":"eschwartz93@gmail.com","authorname":"Eli Schwartz","body":"Upstream last released in 2015. I don't have high hopes for a change but\nI sent an email to the contact address. ;)\n\nCloses: https:\/\/bugs.gentoo.org\/862270\nSigned-off-by: Eli Schwartz \nSigned-off-by: Sam James ","commitid":"224d5e9ecdba92cf4e9e7515056dcad158cbafbd","committime":"2024-03-12T05:50:56","packageid":51757,"repoid":1,"summary":"sci-biology\/glimmerhmm: patch sources to fix LTO"},{"authoremail":"repomirrorci@gentoo.org","authorname":"Repository mirror & CI","commitid":"f2979793991144637956e4225ce4d0235900c1a2","committime":"2023-06-09T15:16:56","packageid":51757,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"arthurzam@gentoo.org","authorname":"Arthur Zamarin","body":"Signed-off-by: Arthur Zamarin ","commitid":"b3c0929360edd5b142e1e6e0178cfbc6d441237c","committime":"2023-06-03T14:46:01","packageid":51757,"repoid":1,"summary":"sci-biology\/glimmerhmm: destabilize for ~x86"},{"authoremail":"repomirrorci@gentoo.org","authorname":"Repository mirror & CI","commitid":"0da74f9e557ec388bdcfe974722f0f8c59012b4f","committime":"2019-12-11T00:25:48","packageid":51757,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"soap@gentoo.org","authorname":"David Seifert","body":"Package-Manager: Portage-2.3.81, Repoman-2.3.20\nSigned-off-by: David Seifert ","commitid":"cc28b9f8549047216b17ff331deedda1141b337e","committime":"2019-12-10T23:48:09","packageid":51757,"repoid":1,"summary":"sci-biology\/glimmerhmm: Port to EAPI 7"},{"authoremail":"repo-qa-checks@gentoo.org","authorname":"Repository QA checks","commitid":"25093d6359f778b8d1052f66ba9e26fc29ded21a","committime":"2017-02-28T20:35:29","packageid":51757,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"robbat2@gentoo.org","authorname":"Robin H. Johnson","body":"Signed-off-by: Robin H. Johnson ","commitid":"61b861acd7b49083dab687e133f30f3331cb7480","committime":"2017-02-28T19:47:27","packageid":51757,"repoid":1,"summary":"Drop $Id$ per council decision in bug #611234."},{"authoremail":"repo-qa-checks@gentoo.org","authorname":"Repository QA checks","commitid":"945f0d2a26da4f944fd06ad6a874f69d37ce1e06","committime":"2015-08-09T09:26:46","packageid":51757,"repoid":1,"summary":"2015-08-09 09:26:21 UTC"},{"authoremail":"robbat2@gentoo.org","authorname":"Robin H. Johnson","body":"This commit represents a new era for Gentoo:\nStoring the gentoo-x86 tree in Git, as converted from CVS.\n\nThis commit is the start of the NEW history.\nAny historical data is intended to be grafted onto this point.\n\nCreation process:\n1. Take final CVS checkout snapshot\n2. Remove ALL ChangeLog* files\n3. Transform all Manifests to thin\n4. Remove empty Manifests\n5. Convert all stale $Header$\/$Id$ CVS keywords to non-expanded Git $Id$\n5.1. Do not touch files with -kb\/-ko keyword flags.\n\nSigned-off-by: Robin H. Johnson \nX-Thanks: Alec Warner - did the GSoC 2006 migration tests\nX-Thanks: Robin H. Johnson - infra guy, herding this project\nX-Thanks: Nguyen Thai Ngoc Duy - Former Gentoo developer, wrote Git features for the migration\nX-Thanks: Brian Harring - wrote much python to improve cvs2svn\nX-Thanks: Rich Freeman - validation scripts\nX-Thanks: Patrick Lauer - Gentoo dev, running new 2014 work in migration\nX-Thanks: Michał Górny - scripts, QA, nagging\nX-Thanks: All of other Gentoo developers - many ideas and lots of paint on the bikeshed","commitid":"56bd759df1d0c750a065b8c845e93d5dfa6b549d","committime":"2015-08-08T20:49:04","packageid":51757,"repoid":1,"summary":"proj\/gentoo: Initial commit"},{"authoremail":"repo-qa-checks@gentoo.org","authorname":"Repository QA checks","commitid":"a637bd65b7fef8e2be4e7fc6e9097479372e0e2e","committime":"2015-06-19T16:38:33","packageid":51757,"repoid":1,"summary":"2015-06-19 16:35:30 UTC"}],"dependencies":[],"depending":[],"ebuilds":[{"archs":["amd64","~x86"],"ebuildid":818234,"firstseen":"2024-03-12T06:47:43.341495","license":"Artistic","moddate":"2026-03-22T20:20:57","packageid":51757,"repoid":1,"slot":"0","uses":[],"version":"3.0.4"},{"archs":["amd64","~x86"],"ebuildid":336970,"firstseen":"2011-06-20T14:34:11.580925","license":"Artistic","moddate":"2026-03-22T20:20:57","packageid":51757,"repoid":1,"slot":"0","uses":[],"version":"3.0.1-r1"}],"masks":[],"package":{"categoryid":353,"description":"A eukaryotic gene finding system from TIGR","firstseen":"2010-05-04T00:54:45.661860","maintainer":"sci-biology@gentoo.org","maintainername":"Gentoo Biology Project","name":"glimmerhmm","packageid":51757},"rdependencies":[],"repos":[{"branch":"master","lastcommit":"52197549fd3431fa256b8edbafdcd3702dd0e134","name":"gentoo","path":"\/usr\/portage","repoid":1,"upstream":"origin"}],"tracked":false,"urls":["http:\/\/www.cbcb.umd.edu\/software\/GlimmerHMM\/"],"uses":[]}