sci-biology / gmap

A Genomic Mapping and Alignment Program for mRNA and EST Sequences

Official package sites : ·

v2020.10.27 :: 0 :: gentoo

~amd64 ~x86
sci-biology/gmap-2015.12.31.5 : ../.../mpidebug.c:29:31: error: ‘MPI_MODE_RDONLY’ undeclared (first use in this function)
sci-biology/gmap-2020.10.27 : file collision with sys-apps/cpuid-20201006
sci-biology/gmap-2020.10.27 fails tests on MUSL
sci-biology/gmap-2020.10.27 has implicit function declarations in configure logs (GCC-13-SYSTEM)
sci-biology/gmap-2020.10.27 fails to compile: genome128_hr.c:3782:12: error: implicit declaration of function _mm256_extract_epi64 [-Wimplicit-function-declaration]
Repository mirror & CI · gentoo
Merge updates from master
David Seifert · gentoo
sci-biology/gmap: Remove old 2015.12.31.5
Closes: Package-Manager: Portage-3.0.8, Repoman-3.0.2 Signed-off-by: David Seifert <>
David Seifert · gentoo
sci-biology/gmap: Version bump to 2020.10.27
Bug: Package-Manager: Portage-3.0.8, Repoman-3.0.2 Signed-off-by: David Seifert <>
Robin H. Johnson · gentoo
Drop $Id$ per council decision in bug #611234.
Signed-off-by: Robin H. Johnson <>
T. Malfatti · gentoo
media-libs/portaudio: Version bump
Pacho Ramos · gentoo
sci-biology/gmap: Drop old (#597984)
Package-Manager: portage-2.3.2
Ian Delaney · gentoo
Merge remote-tracking branch 'remotes/sbraz/urlwatch'
Pull request:
David Seifert · gentoo
sci-biology/gmap: Version bump to 2015.12.31.5
Gentoo-Bug: 521640 * Remove use of 'einstall' * EAPI=6 Package-Manager: portage-2.2.27
Robin H. Johnson · gentoo
proj/gentoo: Initial commit
This commit represents a new era for Gentoo: Storing the gentoo-x86 tree in Git, as converted from CVS. This commit is the start of the NEW history. Any historical data is intended to be grafted onto this point. Creation process: 1. Take final CVS checkout snapshot 2. Remove ALL ChangeLog* files 3. Transform all Manifests to thin 4. Remove empty Manifests 5. Convert all stale $Header$/$Id$ CVS keywords to non-expanded Git $Id$ 5.1. Do not touch files with -kb/-ko keyword flags. Signed-off-by: Robin H. Johnson <> X-Thanks: Alec Warner <> - did the GSoC 2006 migration tests X-Thanks: Robin H. Johnson <> - infra guy, herding this project X-Thanks: Nguyen Thai Ngoc Duy <> - Former Gentoo developer, wrote Git features for the migration X-Thanks: Brian Harring <> - wrote much python to improve cvs2svn X-Thanks: Rich Freeman <> - validation scripts X-Thanks: Patrick Lauer <> - Gentoo dev, running new 2014 work in migration X-Thanks: Michał Górny <> - scripts, QA, nagging X-Thanks: All of other Gentoo developers - many ideas and lots of paint on the bikeshed