{"bugs":[{"bugid":617658,"firstseen":"2025-07-11T02:48:40.189262","severity":"normal","status":"CONFIRMED","summary":"sci-biology\/gmap-2015.12.31.5 : ..\/...\/mpidebug.c:29:31: error: ‘MPI_MODE_RDONLY’ undeclared (first use in this function)"},{"bugid":752150,"firstseen":"2025-07-11T02:48:40.189262","severity":"normal","status":"CONFIRMED","summary":"sci-biology\/gmap-2020.10.27 : file collision with sys-apps\/cpuid-20201006"},{"bugid":836814,"firstseen":"2025-07-11T02:48:40.189262","severity":"normal","status":"CONFIRMED","summary":"sci-biology\/gmap-2020.10.27 fails tests on MUSL"},{"bugid":900549,"firstseen":"2025-07-11T02:48:40.189262","severity":"normal","status":"CONFIRMED","summary":"sci-biology\/gmap-2020.10.27 has implicit function declarations in configure logs (GCC-13-SYSTEM)"},{"bugid":927868,"firstseen":"2025-07-11T02:48:40.189262","severity":"normal","status":"CONFIRMED","summary":"sci-biology\/gmap-2020.10.27 fails to compile: genome128_hr.c:3782:12: error: implicit declaration of function _mm256_extract_epi64 [-Wimplicit-function-declaration]"},{"bugid":944920,"firstseen":"2025-07-11T02:48:40.189262","severity":"normal","status":"CONFIRMED","summary":"sci-biology\/gmap-2020.10.27 fails to compile: bool.h:7:23: error: two or more data types in declaration specifiers"}],"categories":[{"categoryid":353,"name":"sci-biology","summary":"The sci-biology category contains software that can be used in biological and related scientific environments."}],"changelog":[{"authoremail":"repomirrorci@gentoo.org","authorname":"Repository mirror & CI","commitid":"e332bcf48978c21cd488743047c02d61bc77bcce","committime":"2020-11-01T19:05:14","packageid":51090,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"soap@gentoo.org","authorname":"David Seifert","body":"Closes: https:\/\/bugs.gentoo.org\/708626\nPackage-Manager: Portage-3.0.8, Repoman-3.0.2\nSigned-off-by: David Seifert ","commitid":"9a8bd40cd638b96b643898fef0a949b4fe313953","committime":"2020-11-01T18:36:02","packageid":51090,"repoid":1,"summary":"sci-biology\/gmap: Remove old 2015.12.31.5"},{"authoremail":"soap@gentoo.org","authorname":"David Seifert","body":"Bug: https:\/\/bugs.gentoo.org\/708626\nPackage-Manager: Portage-3.0.8, Repoman-3.0.2\nSigned-off-by: David Seifert ","commitid":"e44c9cbdd06cfb672155e0d6747d11e955d90dca","committime":"2020-11-01T18:35:59","packageid":51090,"repoid":1,"summary":"sci-biology\/gmap: Version bump to 2020.10.27"},{"authoremail":"repo-qa-checks@gentoo.org","authorname":"Repository QA checks","commitid":"25093d6359f778b8d1052f66ba9e26fc29ded21a","committime":"2017-02-28T20:35:29","packageid":51090,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"robbat2@gentoo.org","authorname":"Robin H. Johnson","body":"Signed-off-by: Robin H. Johnson ","commitid":"61b861acd7b49083dab687e133f30f3331cb7480","committime":"2017-02-28T19:47:27","packageid":51090,"repoid":1,"summary":"Drop $Id$ per council decision in bug #611234."},{"authoremail":"malfatti@neuro.ufrn.br","authorname":"T. Malfatti","commitid":"8457ba6f9fd6f0dbafcca1fb375788eeea02aae1","committime":"2017-01-26T18:44:34","packageid":51090,"repoid":1,"summary":"media-libs\/portaudio: Version bump"},{"authoremail":"repo-qa-checks@gentoo.org","authorname":"Repository QA checks","commitid":"0410c6968fe16a9aecafef42315a7218709e7ec1","committime":"2016-11-27T12:47:46","packageid":51090,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"pacho@gentoo.org","authorname":"Pacho Ramos","body":"Package-Manager: portage-2.3.2","commitid":"b31cfe0f987401c87a608ee37f57158f70c071e0","committime":"2016-11-27T12:39:20","packageid":51090,"repoid":1,"summary":"sci-biology\/gmap: Drop old (#597984)"},{"authoremail":"idella4@gentoo.org","authorname":"Ian Delaney","body":"Pull request: https:\/\/github.com\/gentoo\/gentoo\/pull\/705","commitid":"b6d9e1b28be0f0cfde49bedc39ddaca4a6afb1ab","committime":"2016-01-22T13:00:31","packageid":51090,"repoid":1,"summary":"Merge remote-tracking branch 'remotes\/sbraz\/urlwatch'"},{"authoremail":"repo-qa-checks@gentoo.org","authorname":"Repository QA checks","commitid":"e48e073053464c5b9cf18e3bb1c03424153484cd","committime":"2016-01-21T18:41:57","packageid":51090,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"soap@gentoo.org","authorname":"David Seifert","body":"Gentoo-Bug: 521640\n* Remove use of 'einstall'\n* EAPI=6\n\nPackage-Manager: portage-2.2.27","commitid":"7cd35418c6930fd640b71b0a19c87a757519eeb0","committime":"2016-01-21T17:49:49","packageid":51090,"repoid":1,"summary":"sci-biology\/gmap: Version bump to 2015.12.31.5"},{"authoremail":"repo-qa-checks@gentoo.org","authorname":"Repository QA checks","commitid":"945f0d2a26da4f944fd06ad6a874f69d37ce1e06","committime":"2015-08-09T09:26:46","packageid":51090,"repoid":1,"summary":"2015-08-09 09:26:21 UTC"},{"authoremail":"robbat2@gentoo.org","authorname":"Robin H. Johnson","body":"This commit represents a new era for Gentoo:\nStoring the gentoo-x86 tree in Git, as converted from CVS.\n\nThis commit is the start of the NEW history.\nAny historical data is intended to be grafted onto this point.\n\nCreation process:\n1. Take final CVS checkout snapshot\n2. Remove ALL ChangeLog* files\n3. Transform all Manifests to thin\n4. Remove empty Manifests\n5. Convert all stale $Header$\/$Id$ CVS keywords to non-expanded Git $Id$\n5.1. Do not touch files with -kb\/-ko keyword flags.\n\nSigned-off-by: Robin H. Johnson \nX-Thanks: Alec Warner - did the GSoC 2006 migration tests\nX-Thanks: Robin H. Johnson - infra guy, herding this project\nX-Thanks: Nguyen Thai Ngoc Duy - Former Gentoo developer, wrote Git features for the migration\nX-Thanks: Brian Harring - wrote much python to improve cvs2svn\nX-Thanks: Rich Freeman - validation scripts\nX-Thanks: Patrick Lauer - Gentoo dev, running new 2014 work in migration\nX-Thanks: Michał Górny - scripts, QA, nagging\nX-Thanks: All of other Gentoo developers - many ideas and lots of paint on the bikeshed","commitid":"56bd759df1d0c750a065b8c845e93d5dfa6b549d","committime":"2015-08-08T20:49:04","packageid":51090,"repoid":1,"summary":"proj\/gentoo: Initial commit"},{"authoremail":"repo-qa-checks@gentoo.org","authorname":"Repository QA checks","commitid":"a637bd65b7fef8e2be4e7fc6e9097479372e0e2e","committime":"2015-06-19T16:38:33","packageid":51090,"repoid":1,"summary":"2015-06-19 16:35:30 UTC"}],"dependencies":[],"depending":[],"ebuilds":[{"archs":["~amd64","~x86"],"ebuildid":690565,"firstseen":"2020-11-01T19:19:41.272296","license":"gmap","moddate":"2020-11-01T19:19:41","packageid":51090,"repoid":1,"slot":"0","uses":[],"version":"2020.10.27"}],"masks":[],"package":{"categoryid":353,"description":"A Genomic Mapping and Alignment Program for mRNA and EST Sequences","firstseen":"2010-05-04T00:54:45.661860","maintainer":"sci-biology@gentoo.org","maintainername":"Gentoo Biology Project","name":"gmap","packageid":51090},"rdependencies":[],"repos":[{"branch":"master","lastcommit":"d5ea4ae79d5a357ba2876224bf1167c46a1f4651","name":"gentoo","path":"\/usr\/portage","repoid":1,"upstream":"origin"}],"tracked":false,"urls":["http:\/\/research-pub.gene.com\/gmap\/"],"uses":[]}