sci-biology / kallisto

Near-optimal RNA-Seq quantification

Official package sites : http://pachterlab.github.io/kallisto/ ·

Versions

v0.46.2 :: 0 :: gentoo

Modified
License
BSD
Keywords
~amd64 ~amd64-linux ~x86 ~x86-linux
USE flags
hdf5 test

USE flags

General

hdf5
Add support for the Hierarchical Data Format v5
test
Enable dependencies and/or preparations necessary to run tests (usually controlled by FEATURES=test but can be toggled independently)

Dependencies

dev-cpp / catch : Modern C++ header-only framework for unit-tests

sci-libs / hdf5 : General purpose library and file format for storing scientific data

sci-libs / htslib : C library for high-throughput sequencing data formats

sys-libs / zlib : Standard (de)compression library

Runtime Dependencies

sci-libs / hdf5 : General purpose library and file format for storing scientific data

sci-libs / htslib : C library for high-throughput sequencing data formats

sys-libs / zlib : Standard (de)compression library

Bugs

830041
sci-biology/kallisto-0.46.2 - /.../Bootstrap.h: error: uint has not been declared
877887
sci-biology/kallisto-0.46.2 fails to compile (lto): main.cpp:2:10: fatal error: catch.hpp: No such file or directory
907972
sci-biology/kallisto-0.46.2 fails to compile (MUSL-SYSTEM): common.h:132:24: error: std::string pretty_num redeclared as different kind of entity

Change logs

Repository mirror & CI · gentoo
Merge updates from master
David Seifert · gentoo
sci-biology/kallisto: Remove live ebuild
* Upstream is barely active and doesn't merge PRs Package-Manager: Portage-3.0.18, Repoman-3.0.3 Signed-off-by: David Seifert <soap@gentoo.org>
David Seifert · gentoo
sci-biology/kallisto: Remove old 0.43.1
Closes: https://bugs.gentoo.org/696504 Closes: https://bugs.gentoo.org/708658 Closes: https://bugs.gentoo.org/788427 Package-Manager: Portage-3.0.18, Repoman-3.0.3 Signed-off-by: David Seifert <soap@gentoo.org>
David Seifert · gentoo
sci-biology/kallisto: Bump to 0.46.2
Bug: https://bugs.gentoo.org/696504 Bug: https://bugs.gentoo.org/708658 Bug: https://bugs.gentoo.org/788427 Package-Manager: Portage-3.0.18, Repoman-3.0.3 Signed-off-by: David Seifert <soap@gentoo.org>
David Seifert · gentoo
sci-biology/kallisto: Initial addition
Closes: https://github.com/gentoo/sci/pull/814 Package-Manager: Portage-2.3.14, Repoman-2.3.6