{"bugs":[{"bugid":725322,"firstseen":"2020-05-25T14:53:22.835558","severity":"normal","status":"CONFIRMED","summary":"sci-biology\/mafft-7.490 fails tests: ..\/core\/mafft: line 911: \/dev\/stderr: Permission denied"},{"bugid":944919,"firstseen":"2024-11-25T11:03:52.341341","severity":"normal","status":"CONFIRMED","summary":"sci-biology\/mafft-7.490 fails to compile: functions.h:78:13: error: conflicting types for cpmx_calc; have void(char , double , double , int, int)"}],"categories":[{"categoryid":353,"name":"sci-biology","summary":"The sci-biology category contains software that can be used in biological and related scientific environments."},{"categoryid":416,"name":"sci-chemistry","summary":"The sci-chemistry category contains software that can be used in chemistral scientific environments."}],"changelog":[{"authoremail":"repomirrorci@gentoo.org","authorname":"Repository mirror & CI","commitid":"6539192f9d7205a5ae3e1e55dfd1aecf177e6439","committime":"2022-06-25T19:02:39","packageid":45811,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"soap@gentoo.org","authorname":"David Seifert","body":"Signed-off-by: David Seifert ","commitid":"8fd5549edf07f4c19086252ca389a16720bd3700","committime":"2022-06-25T18:51:03","packageid":45811,"repoid":1,"summary":"sci-biology\/mafft: drop 7.305"},{"authoremail":"repomirrorci@gentoo.org","authorname":"Repository mirror & CI","commitid":"a454225ce74c684d6e81bbae326c8db0ab31692a","committime":"2022-06-19T18:17:56","packageid":45811,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"soap@gentoo.org","authorname":"David Seifert","body":"Signed-off-by: David Seifert ","commitid":"481e43cca963debc0db30e5c751dda55dc4ea5d7","committime":"2022-06-19T18:04:28","packageid":45811,"repoid":1,"summary":"sci-biology\/mafft: add 7.490"},{"authoremail":"repomirrorci@gentoo.org","authorname":"Repository mirror & CI","commitid":"e09fb731e1e423680e7686c41224fdce5e996fa7","committime":"2021-01-06T15:35:03","packageid":45811,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"grobian@gentoo.org","authorname":"Fabian Groffen","body":"Package-Manager: Portage-3.0.12, Repoman-3.0.2\nSigned-off-by: Fabian Groffen ","commitid":"379bdc341c1768897390b09c7211dd18686a9dcb","committime":"2021-01-06T15:08:55","packageid":45811,"repoid":1,"summary":"sci-biology\/mafft: drop x86-macos"},{"authoremail":"repomirrorci@gentoo.org","authorname":"Repository mirror & CI","commitid":"6b8aeccb3a0e86dee971afac16f62472304cdbb1","committime":"2020-04-22T09:42:57","packageid":45811,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"soap@gentoo.org","authorname":"David Seifert","body":"Package-Manager: Portage-2.3.99, Repoman-2.3.22\nSigned-off-by: David Seifert ","commitid":"cf8848d5138c458f814b893dcfd9fe0603653e93","committime":"2020-04-22T09:29:43","packageid":45811,"repoid":1,"summary":"sci-biology\/mafft: Remove old"},{"authoremail":"soap@gentoo.org","authorname":"David Seifert","body":"Closes: https:\/\/bugs.gentoo.org\/707738\nPackage-Manager: Portage-2.3.99, Repoman-2.3.22\nSigned-off-by: David Seifert ","commitid":"b2e205cd00f9cf8b4e13e159750a68f964b4862a","committime":"2020-04-22T09:29:40","packageid":45811,"repoid":1,"summary":"sci-biology\/mafft: Fix -fno-common \/ GCC 10"},{"authoremail":"repo-qa-checks@gentoo.org","authorname":"Repository QA checks","commitid":"2fbdfbc003d28cd80696303439a07a13ff2dc035","committime":"2018-05-21T17:29:55","packageid":45811,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"m.mairkeimberger@gmail.com","authorname":"Michael Mair-Keimberger","commitid":"b8057dabc8b51cfddf3d94aee03b1433e8eccdc0","committime":"2018-05-21T10:14:17","packageid":45811,"repoid":1,"summary":"sci-biology\/mafft: use HTTPs"},{"authoremail":"repo-qa-checks@gentoo.org","authorname":"Repository QA checks","commitid":"25093d6359f778b8d1052f66ba9e26fc29ded21a","committime":"2017-02-28T20:35:29","packageid":45811,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"robbat2@gentoo.org","authorname":"Robin H. Johnson","body":"Signed-off-by: Robin H. Johnson ","commitid":"61b861acd7b49083dab687e133f30f3331cb7480","committime":"2017-02-28T19:47:27","packageid":45811,"repoid":1,"summary":"Drop $Id$ per council decision in bug #611234."},{"authoremail":"repo-qa-checks@gentoo.org","authorname":"Repository QA checks","commitid":"bfea4b62d4886ed177225ccb7663a8e399e16e05","committime":"2016-09-03T23:22:37","packageid":45811,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"soap@gentoo.org","authorname":"David Seifert","body":"* EAPI=6\n\nPackage-Manager: portage-2.3.0","commitid":"b68b635822e44c2ef09f7bee420e93887f93e2ea","committime":"2016-09-03T23:02:55","packageid":45811,"repoid":1,"summary":"sci-biology\/mafft: Version bump to 7.305"},{"authoremail":"repo-qa-checks@gentoo.org","authorname":"Repository QA checks","commitid":"945f0d2a26da4f944fd06ad6a874f69d37ce1e06","committime":"2015-08-09T09:26:46","packageid":45811,"repoid":1,"summary":"2015-08-09 09:26:21 UTC"},{"authoremail":"robbat2@gentoo.org","authorname":"Robin H. Johnson","body":"This commit represents a new era for Gentoo:\nStoring the gentoo-x86 tree in Git, as converted from CVS.\n\nThis commit is the start of the NEW history.\nAny historical data is intended to be grafted onto this point.\n\nCreation process:\n1. Take final CVS checkout snapshot\n2. Remove ALL ChangeLog* files\n3. Transform all Manifests to thin\n4. Remove empty Manifests\n5. Convert all stale $Header$\/$Id$ CVS keywords to non-expanded Git $Id$\n5.1. Do not touch files with -kb\/-ko keyword flags.\n\nSigned-off-by: Robin H. Johnson \nX-Thanks: Alec Warner - did the GSoC 2006 migration tests\nX-Thanks: Robin H. Johnson - infra guy, herding this project\nX-Thanks: Nguyen Thai Ngoc Duy - Former Gentoo developer, wrote Git features for the migration\nX-Thanks: Brian Harring - wrote much python to improve cvs2svn\nX-Thanks: Rich Freeman - validation scripts\nX-Thanks: Patrick Lauer - Gentoo dev, running new 2014 work in migration\nX-Thanks: Michał Górny - scripts, QA, nagging\nX-Thanks: All of other Gentoo developers - many ideas and lots of paint on the bikeshed","commitid":"56bd759df1d0c750a065b8c845e93d5dfa6b549d","committime":"2015-08-08T20:49:04","packageid":45811,"repoid":1,"summary":"proj\/gentoo: Initial commit"},{"authoremail":"repo-qa-checks@gentoo.org","authorname":"Repository QA checks","commitid":"a637bd65b7fef8e2be4e7fc6e9097479372e0e2e","committime":"2015-06-19T16:38:33","packageid":45811,"repoid":1,"summary":"2015-06-19 16:35:30 UTC"}],"dependencies":[],"depending":[{"block":false,"categoryid":416,"description":"Maximum likelihood superpositioning and analysis of macromolecular structures","ebuildids":[713620,713620],"firstseen":"2012-03-21T20:52:40.034466","maintainer":"sci-chemistry@gentoo.org","maintainername":"Gentoo Chemistry Project","name":"theseus","packageid":59040}],"ebuilds":[{"archs":["~amd64","~amd64-linux","~x64-macos","~x86","~x86-linux"],"ebuildid":753654,"firstseen":"2022-06-19T19:34:09.739682","license":"BSD","moddate":"2024-12-17T22:35:47","packageid":45811,"repoid":1,"slot":"0","uses":[],"version":"7.490"}],"masks":[],"package":{"categoryid":353,"description":"Multiple sequence alignments using a variety of algorithms","firstseen":"2010-05-04T00:54:45.661860","maintainer":"sci-biology@gentoo.org","maintainername":"Gentoo Biology Project","name":"mafft","packageid":45811},"rdependencies":[],"repos":[{"branch":"master","lastcommit":"651fc8052593c76a95432cb9894d1c0f5deed9e4","name":"gentoo","path":"\/usr\/portage","repoid":1,"upstream":"origin"}],"tracked":false,"urls":["https:\/\/mafft.cbrc.jp\/alignment\/software\/index.html"],"uses":[]}