{"bugs":[{"bugid":900555,"firstseen":"2023-03-09T14:53:32.711508","severity":"normal","status":"CONFIRMED","summary":"sci-biology\/mcl-14.137 has implicit function declarations in configure logs (GCC-13-SYSTEM)"},{"bugid":927869,"firstseen":"2024-03-26T09:05:40.899344","severity":"normal","status":"CONFIRMED","summary":"sci-biology\/mcl-14.137 fails to compile: mcxquery.c:1237:58: error: passing argument 4 of get_cls_id from incompatible pointer type [-Wincompatible-pointer-types]"},{"bugid":944918,"firstseen":"2024-11-25T11:03:52.341341","severity":"normal","status":"CONFIRMED","summary":"sci-biology\/mcl-14.137 fails to compile: mclcm.c:330:6: error: conflicting types for usage; have void(const char )"}],"categories":[{"categoryid":353,"name":"sci-biology","summary":"The sci-biology category contains software that can be used in biological and related scientific environments."}],"changelog":[{"authoremail":"repomirrorci@gentoo.org","authorname":"Repository mirror & CI","commitid":"466febabf72f8d677b8060736a322376afa23a5c","committime":"2020-06-21T14:05:15","packageid":41928,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"soap@gentoo.org","authorname":"David Seifert","body":"Closes: https:\/\/bugs.gentoo.org\/706530\nPackage-Manager: Portage-2.3.101, Repoman-2.3.22\nSigned-off-by: David Seifert ","commitid":"4129eb414e8ac4027b2e7c4b9445aa8075fd8dea","committime":"2020-06-21T13:49:32","packageid":41928,"repoid":1,"summary":"sci-biology\/mcl: Fix building against GCC 10"},{"authoremail":"soap@gentoo.org","authorname":"David Seifert","body":"Closes: https:\/\/bugs.gentoo.org\/725326\nPackage-Manager: Portage-2.3.101, Repoman-2.3.22\nSigned-off-by: David Seifert ","commitid":"e551399e2f1a78e5037eb8930c0a53e11d97618c","committime":"2020-06-21T13:49:29","packageid":41928,"repoid":1,"summary":"sci-biology\/mcl: [QA] Call AM_PROG_AR"},{"authoremail":"repomirrorci@gentoo.org","authorname":"Repository mirror & CI","commitid":"445476d0981500915a61c82d8e19f60856fa6a00","committime":"2019-11-24T03:45:55","packageid":41928,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"bman@gentoo.org","authorname":"Aaron Bauman","body":"Signed-off-by: Aaron Bauman ","commitid":"58ddef9233b94795532f01b001f4505fc61309af","committime":"2019-11-24T03:11:06","packageid":41928,"repoid":1,"summary":"sci-biology\/mcl: drop old EAPI"},{"authoremail":"repo-qa-checks@gentoo.org","authorname":"Repository QA checks","commitid":"25093d6359f778b8d1052f66ba9e26fc29ded21a","committime":"2017-02-28T20:35:29","packageid":41928,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"robbat2@gentoo.org","authorname":"Robin H. Johnson","body":"Signed-off-by: Robin H. Johnson ","commitid":"61b861acd7b49083dab687e133f30f3331cb7480","committime":"2017-02-28T19:47:27","packageid":41928,"repoid":1,"summary":"Drop $Id$ per council decision in bug #611234."},{"authoremail":"repo-qa-checks@gentoo.org","authorname":"Repository QA checks","commitid":"2a988d6ed9aa6769d5a0612e107231d192588fc4","committime":"2015-12-25T12:58:24","packageid":41928,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"ted.tanberry@gmail.com","authorname":"Ted Tanberry","body":"Package-Manager: portage-2.2.26","commitid":"61b8654f706e0c48f79a631ee797be9ba5135b2c","committime":"2015-12-24T20:12:54","packageid":41928,"repoid":1,"summary":"sci-biology\/mcl: Version bump, fix bug 569040 and QA issues."},{"authoremail":"repo-qa-checks@gentoo.org","authorname":"Repository QA checks","commitid":"945f0d2a26da4f944fd06ad6a874f69d37ce1e06","committime":"2015-08-09T09:26:46","packageid":41928,"repoid":1,"summary":"2015-08-09 09:26:21 UTC"},{"authoremail":"robbat2@gentoo.org","authorname":"Robin H. Johnson","body":"This commit represents a new era for Gentoo:\nStoring the gentoo-x86 tree in Git, as converted from CVS.\n\nThis commit is the start of the NEW history.\nAny historical data is intended to be grafted onto this point.\n\nCreation process:\n1. Take final CVS checkout snapshot\n2. Remove ALL ChangeLog* files\n3. Transform all Manifests to thin\n4. Remove empty Manifests\n5. Convert all stale $Header$\/$Id$ CVS keywords to non-expanded Git $Id$\n5.1. Do not touch files with -kb\/-ko keyword flags.\n\nSigned-off-by: Robin H. Johnson \nX-Thanks: Alec Warner - did the GSoC 2006 migration tests\nX-Thanks: Robin H. Johnson - infra guy, herding this project\nX-Thanks: Nguyen Thai Ngoc Duy - Former Gentoo developer, wrote Git features for the migration\nX-Thanks: Brian Harring - wrote much python to improve cvs2svn\nX-Thanks: Rich Freeman - validation scripts\nX-Thanks: Patrick Lauer - Gentoo dev, running new 2014 work in migration\nX-Thanks: Michał Górny - scripts, QA, nagging\nX-Thanks: All of other Gentoo developers - many ideas and lots of paint on the bikeshed","commitid":"56bd759df1d0c750a065b8c845e93d5dfa6b549d","committime":"2015-08-08T20:49:04","packageid":41928,"repoid":1,"summary":"proj\/gentoo: Initial commit"},{"authoremail":"repo-qa-checks@gentoo.org","authorname":"Repository QA checks","commitid":"a637bd65b7fef8e2be4e7fc6e9097479372e0e2e","committime":"2015-06-19T16:38:33","packageid":41928,"repoid":1,"summary":"2015-06-19 16:35:30 UTC"}],"dependencies":[],"depending":[],"ebuilds":[{"archs":["~amd64","~x86"],"ebuildid":598819,"firstseen":"2015-12-25T14:36:07.552851","license":"GPL-2","moddate":"2024-12-17T22:35:47","packageid":41928,"repoid":1,"slot":"0","uses":["blast"],"version":"14.137"}],"masks":[],"package":{"categoryid":353,"description":"A Markov Cluster Algorithm implementation","firstseen":"2010-05-04T00:54:45.661860","maintainer":"sci-biology@gentoo.org","maintainername":"Gentoo Biology Project","name":"mcl","packageid":41928},"rdependencies":[],"repos":[{"branch":"master","lastcommit":"6dc5030b2c75e9a41efb25827478b80d66bedaae","name":"gentoo","path":"\/usr\/portage","repoid":1,"upstream":"origin"}],"tracked":false,"urls":["http:\/\/micans.org\/mcl\/"],"uses":[{"defaultflag":true,"description":"Add support for NCBI BLAST data","isdefault":true,"packageid":41928,"use":"blast"}]}