sci-biology / meme

The MEME/MAST system - Motif discovery and search

Official package sites : http://meme-suite.org/tools/meme ·

v4.11.2_p2 :: 0 :: gentoo

Modified
License
meme
Keywords
~amd64 ~x86
USE flags
debug doc examples mpi

General

debug
Enable extra debug codepaths, like asserts and extra output. If you want to get meaningful backtraces see https://wiki.gentoo.org/wiki/Project:Quality_Assurance/Backtraces
doc
Add extra documentation (API, Javadoc, etc). It is recommended to enable per package instead of globally
examples
Install examples, usually source code
mpi
Add MPI (Message Passing Interface) layer to the apps that support it

python_targets

python2_7
Build with Python 2.7

app-portage / elt-patches : Collection of patches for libtool.eclass

app-shells / tcsh : Enhanced version of the Berkeley C shell (csh)

app-text / ghostscript-gpl : Interpreter for the PostScript language and PDF

dev-lang / perl : Larry Wall's Practical Extraction and Report Language

dev-lang / python : An interpreted, interactive, object-oriented programming language

dev-lang / python-exec : Python script wrapper

dev-libs / libxml2 : XML C parser and toolkit

dev-libs / libxslt : XSLT libraries and tools

dev-perl / HTML-Parser : Parse <HEAD> section of HTML documents

dev-perl / HTML-Template : A Perl module to use HTML Templates

dev-perl / Log-Log4perl : Log4j implementation for Perl

dev-perl / Math-CDF : Generate probabilities and quantiles from statistical functions

dev-perl / XML-Compile-SOAP : Soap 1.1 XML Compiler

dev-perl / XML-Compile-WSDL11 : WSDL version 1.1 XML Compiler

dev-perl / XML-Parser : A Perl extension interface to James Clark's XML parser, expat

dev-perl / XML-Simple : An API for simple XML files

media-gfx / imagemagick : A collection of tools and libraries for many image formats

sys-devel / autoconf : Used to create autoconfiguration files

sys-devel / automake : Used to generate Makefile.in from Makefile.am

sys-devel / libtool : A shared library tool for developers

sys-libs / zlib : Standard (de)compression library

virtual / mpi : Virtual for Message Passing Interface (MPI) v2.0 implementation

virtual / perl-Data-Dumper : Virtual for Data-Dumper

virtual / perl-Exporter : Virtual for Exporter

virtual / perl-File-Path : Virtual for File-Path

virtual / perl-File-Spec : Virtual for File-Spec

virtual / perl-File-Temp : Virtual for File-Temp

virtual / perl-Getopt-Long : Virtual for Getopt-Long

virtual / perl-Scalar-List-Utils : Virtual for Scalar::Util and List::Util, also distributed as Scalar::List::Utils

virtual / perl-Time-HiRes : Virtual for Time-HiRes

app-shells / tcsh : Enhanced version of the Berkeley C shell (csh)

app-text / ghostscript-gpl : Interpreter for the PostScript language and PDF

dev-lang / perl : Larry Wall's Practical Extraction and Report Language

dev-lang / python : An interpreted, interactive, object-oriented programming language

dev-lang / python-exec : Python script wrapper

dev-libs / libxml2 : XML C parser and toolkit

dev-libs / libxslt : XSLT libraries and tools

dev-perl / HTML-Parser : Parse <HEAD> section of HTML documents

dev-perl / HTML-Template : A Perl module to use HTML Templates

dev-perl / Log-Log4perl : Log4j implementation for Perl

dev-perl / Math-CDF : Generate probabilities and quantiles from statistical functions

dev-perl / XML-Compile-SOAP : Soap 1.1 XML Compiler

dev-perl / XML-Compile-WSDL11 : WSDL version 1.1 XML Compiler

dev-perl / XML-Parser : A Perl extension interface to James Clark's XML parser, expat

dev-perl / XML-Simple : An API for simple XML files

media-gfx / imagemagick : A collection of tools and libraries for many image formats

sys-libs / zlib : Standard (de)compression library

virtual / mpi : Virtual for Message Passing Interface (MPI) v2.0 implementation

virtual / perl-Data-Dumper : Virtual for Data-Dumper

virtual / perl-Exporter : Virtual for Exporter

virtual / perl-File-Path : Virtual for File-Path

virtual / perl-File-Spec : Virtual for File-Spec

virtual / perl-File-Temp : Virtual for File-Temp

virtual / perl-Getopt-Long : Virtual for Getopt-Long

virtual / perl-Scalar-List-Utils : Virtual for Scalar::Util and List::Util, also distributed as Scalar::List::Utils

virtual / perl-Time-HiRes : Virtual for Time-HiRes

sci-biology / embassy-meme : EMBOSS integrated version of MEME - Multiple Em for Motif Elicitation

625502
sci-biology/meme fails tests ( FAIL: dreme1,dreme2,fasta-center1 ... )
Robin H. Johnson · gentoo
Drop $Id$ per council decision in bug #611234.
Signed-off-by: Robin H. Johnson <robbat2@gentoo.org>
David Seifert · gentoo
sci-biology/meme: Remove use of 'diropts'
Bug: https://bugs.gentoo.org/show_bug.cgi?id=608046 Package-Manager: Portage-2.3.3, Repoman-2.3.1
David Seifert · gentoo
sci-biology/meme: Remove old
Package-Manager: Portage-2.3.3, Repoman-2.3.1
T. Malfatti · gentoo
media-libs/portaudio: Version bump
David Seifert · gentoo
sci-biology/meme: Version bump to 4.11.2_p2
Gentoo-bug: 599860 * EAPI=6 * Install documentation and examples correctly * Install perl and python modules correctly * Add missing perl runtime dependencies Package-Manager: portage-2.3.2
Robin H. Johnson · gentoo
proj/gentoo: Initial commit
This commit represents a new era for Gentoo: Storing the gentoo-x86 tree in Git, as converted from CVS. This commit is the start of the NEW history. Any historical data is intended to be grafted onto this point. Creation process: 1. Take final CVS checkout snapshot 2. Remove ALL ChangeLog* files 3. Transform all Manifests to thin 4. Remove empty Manifests 5. Convert all stale $Header$/$Id$ CVS keywords to non-expanded Git $Id$ 5.1. Do not touch files with -kb/-ko keyword flags. Signed-off-by: Robin H. Johnson <robbat2@gentoo.org> X-Thanks: Alec Warner <antarus@gentoo.org> - did the GSoC 2006 migration tests X-Thanks: Robin H. Johnson <robbat2@gentoo.org> - infra guy, herding this project X-Thanks: Nguyen Thai Ngoc Duy <pclouds@gentoo.org> - Former Gentoo developer, wrote Git features for the migration X-Thanks: Brian Harring <ferringb@gentoo.org> - wrote much python to improve cvs2svn X-Thanks: Rich Freeman <rich0@gentoo.org> - validation scripts X-Thanks: Patrick Lauer <patrick@gentoo.org> - Gentoo dev, running new 2014 work in migration X-Thanks: Michał Górny <mgorny@gentoo.org> - scripts, QA, nagging X-Thanks: All of other Gentoo developers - many ideas and lots of paint on the bikeshed