{"bugs":[{"bugid":898120,"firstseen":"2025-07-11T02:48:40.189262","severity":"normal","status":"CONFIRMED","summary":"sci-biology\/mosaik-2.2.30 fails to compile (MUSL-CLANG-SYSTEM): SHA1.cpp:76:2: error: ISO C++17 does not allow register storage class specifier [-Wregister]"},{"bugid":913592,"firstseen":"2025-07-11T02:48:40.189262","severity":"normal","status":"CONFIRMED","summary":"sci-biology\/mosaik-2.2.30 - [clang] JumpDnaHash.cpp: error: use of undeclared identifier random_shuffle"}],"categories":[{"categoryid":353,"name":"sci-biology","summary":"The sci-biology category contains software that can be used in biological and related scientific environments."}],"changelog":[{"authoremail":"repomirrorci@gentoo.org","authorname":"Repository mirror & CI","commitid":"85ee7429a4bf389f06bfe6bebf8cbde766f2fbb2","committime":"2022-06-13T12:17:54","packageid":43693,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"sam@gentoo.org","authorname":"Sam James","body":"Closes: https:\/\/bugs.gentoo.org\/851669\nSigned-off-by: Sam James ","commitid":"3a8ddd083f460ba38a0950f1da70ff0ac2108bff","committime":"2022-06-13T12:09:55","packageid":43693,"repoid":1,"summary":"sci-biology\/mosaik: fix build with GCC 12"},{"authoremail":"repomirrorci@gentoo.org","authorname":"Repository mirror & CI","commitid":"82b37a27e889ff1af7cfc1e3a8c2f06ef8622566","committime":"2022-03-20T19:04:16","packageid":43693,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"sam@gentoo.org","authorname":"Sam James","body":"This can cause build problems for e.g. 32-bit (gcc -m32 ...)\n\nSigned-off-by: Sam James ","commitid":"cb339254365b65f490858cddbdac98cf7dd92a6b","committime":"2022-03-20T18:49:35","packageid":43693,"repoid":1,"summary":"sci-biology\/mosaik: [QA] fix tc-get* quoting"},{"authoremail":"repomirrorci@gentoo.org","authorname":"Repository mirror & CI","commitid":"12c225470576e53741cd5c506bc0016ace17ae34","committime":"2021-07-25T23:22:07","packageid":43693,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"soap@gentoo.org","authorname":"David Seifert","body":"Closes: https:\/\/bugs.gentoo.org\/788331\nSigned-off-by: David Seifert ","commitid":"60b0fd58e2765499b9d2a83c3293b7021b05908c","committime":"2021-07-25T23:06:31","packageid":43693,"repoid":1,"summary":"sci-biology\/mosaik: Fix GCC 11 build"},{"authoremail":"repo-qa-checks@gentoo.org","authorname":"Repository QA checks","commitid":"98ea3a7743390df7c16d881b59ad4c778c0f554c","committime":"2017-12-24T18:10:54","packageid":43693,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"soap@gentoo.org","authorname":"David Seifert","body":"Closes: https:\/\/bugs.gentoo.org\/638362\nPackage-Manager: Portage-2.3.19, Repoman-2.3.6","commitid":"482233a91158648368385cc8dd54fb0a77059020","committime":"2017-12-24T11:53:03","packageid":43693,"repoid":1,"summary":"sci-biology\/mosaik: Fix building with GCC 7"},{"authoremail":"repo-qa-checks@gentoo.org","authorname":"Repository QA checks","commitid":"25093d6359f778b8d1052f66ba9e26fc29ded21a","committime":"2017-02-28T20:35:29","packageid":43693,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"robbat2@gentoo.org","authorname":"Robin H. Johnson","body":"Signed-off-by: Robin H. Johnson ","commitid":"61b861acd7b49083dab687e133f30f3331cb7480","committime":"2017-02-28T19:47:27","packageid":43693,"repoid":1,"summary":"Drop $Id$ per council decision in bug #611234."},{"authoremail":"repo-qa-checks@gentoo.org","authorname":"Repository QA checks","commitid":"0db351898e22ad8be72dea6694a6ce2e8460a1d7","committime":"2017-02-25T17:22:09","packageid":43693,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"soap@gentoo.org","authorname":"David Seifert","body":"Package-Manager: Portage-2.3.3, Repoman-2.3.1\nCloses: https:\/\/github.com\/gentoo\/gentoo\/pull\/4076","commitid":"abe1e98a9ca7e95bb94345ef2c2c567a9d9d781a","committime":"2017-02-25T16:35:43","packageid":43693,"repoid":1,"summary":"sci-biology\/mosaik: Remove old"},{"authoremail":"repo-qa-checks@gentoo.org","authorname":"Repository QA checks","commitid":"600297ff7267a7e968867570ac9d2edf66851868","committime":"2016-09-04T13:27:04","packageid":43693,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"soap@gentoo.org","authorname":"David Seifert","body":"* EAPI=6\n* Make build system verbose\n* Honour CPPFLAGS and LDFLAGS\n* Handle LFS properly\n* Fix -Werror=format-security errors\n\nPackage-Manager: portage-2.3.0","commitid":"b57cefc0475955dc9dce44855af6a5795a78a001","committime":"2016-09-04T12:59:47","packageid":43693,"repoid":1,"summary":"sci-biology\/mosaik: Version bump to 2.2.30"},{"authoremail":"repo-qa-checks@gentoo.org","authorname":"Repository QA checks","commitid":"807d7c8ef7ce9a17a831c4b042b497afa97d470d","committime":"2015-08-24T14:06:35","packageid":43693,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"jlec@gentoo.org","authorname":"Justin Lecher","body":"Signed-off-by: Justin Lecher ","commitid":"dea7c3060641b628cd6a2e2d97db18903c86862e","committime":"2015-08-24T13:41:27","packageid":43693,"repoid":1,"summary":"Convert URIs for googlecode.com to https"},{"authoremail":"repo-qa-checks@gentoo.org","authorname":"Repository QA checks","commitid":"b8cce015b8b1869513a3bbb621225f2b688c56c8","committime":"2015-08-24T11:46:39","packageid":43693,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"jlec@gentoo.org","authorname":"Justin Lecher","body":"Signed-off-by: Justin Lecher ","commitid":"769c75f84ac0d1be61ecaeaff0fcc8c509063ec5","committime":"2015-08-24T11:35:05","packageid":43693,"repoid":1,"summary":"Enable https for all google URIs"},{"authoremail":"repo-qa-checks@gentoo.org","authorname":"Repository QA checks","commitid":"945f0d2a26da4f944fd06ad6a874f69d37ce1e06","committime":"2015-08-09T09:26:46","packageid":43693,"repoid":1,"summary":"2015-08-09 09:26:21 UTC"},{"authoremail":"robbat2@gentoo.org","authorname":"Robin H. Johnson","body":"This commit represents a new era for Gentoo:\nStoring the gentoo-x86 tree in Git, as converted from CVS.\n\nThis commit is the start of the NEW history.\nAny historical data is intended to be grafted onto this point.\n\nCreation process:\n1. Take final CVS checkout snapshot\n2. Remove ALL ChangeLog* files\n3. Transform all Manifests to thin\n4. Remove empty Manifests\n5. Convert all stale $Header$\/$Id$ CVS keywords to non-expanded Git $Id$\n5.1. Do not touch files with -kb\/-ko keyword flags.\n\nSigned-off-by: Robin H. Johnson \nX-Thanks: Alec Warner - did the GSoC 2006 migration tests\nX-Thanks: Robin H. Johnson - infra guy, herding this project\nX-Thanks: Nguyen Thai Ngoc Duy - Former Gentoo developer, wrote Git features for the migration\nX-Thanks: Brian Harring - wrote much python to improve cvs2svn\nX-Thanks: Rich Freeman - validation scripts\nX-Thanks: Patrick Lauer - Gentoo dev, running new 2014 work in migration\nX-Thanks: Michał Górny - scripts, QA, nagging\nX-Thanks: All of other Gentoo developers - many ideas and lots of paint on the bikeshed","commitid":"56bd759df1d0c750a065b8c845e93d5dfa6b549d","committime":"2015-08-08T20:49:04","packageid":43693,"repoid":1,"summary":"proj\/gentoo: Initial commit"},{"authoremail":"repo-qa-checks@gentoo.org","authorname":"Repository QA checks","commitid":"a637bd65b7fef8e2be4e7fc6e9097479372e0e2e","committime":"2015-06-19T16:38:33","packageid":43693,"repoid":1,"summary":"2015-06-19 16:35:30 UTC"}],"dependencies":[],"depending":[],"ebuilds":[{"archs":["~amd64","~x86"],"ebuildid":1711,"firstseen":"2016-09-04T13:38:59.097001","license":"GPL-2","moddate":"2026-03-22T20:20:57","packageid":43693,"repoid":1,"slot":"0","uses":[],"version":"2.2.30"}],"masks":[],"package":{"categoryid":353,"description":"A reference-guided aligner for next-generation sequencing technologies","firstseen":"2010-05-04T00:54:45.661860","maintainer":"sci-biology@gentoo.org","maintainername":"Gentoo Biology Project","name":"mosaik","packageid":43693},"rdependencies":[],"repos":[{"branch":"master","lastcommit":"f87ce2b74421571078063820dc1065e7089c9fa7","name":"gentoo","path":"\/usr\/portage","repoid":1,"upstream":"origin"}],"tracked":false,"urls":["https:\/\/github.com\/wanpinglee\/MOSAIK"],"uses":[]}