Versions
v1.48.0 :: 0 :: gentoo
- Modified
- License
- GPL-3
- Keywords
- amd64 ~x86
- USE flags
- boost gsl hdf5 mpi readline
v1.27.0-r1 :: 0 :: gentoo
- Modified
- License
- GPL-3
- Keywords
- amd64 ~x86
- USE flags
- mpi readline
USE flags
General
- boost
- Depend on dev-libs/boost for make.contigs to read .gz compressed files.
- gsl
- Use sci-libs/gsl to support diversity estimates for estimiator.single.
- hdf5
- Support Biom format 2.0 for the biom.info command via sci-libs/hdf5.
- mpi
- Add MPI (Message Passing Interface) layer to the apps that support it
- readline
- Enable support for libreadline, a GNU line-editing library that almost everyone wants
Dependencies
dev-libs / boost : Boost Libraries for C++
sci-biology / uchime : Fast, accurate chimera detection
sci-libs / gsl : The GNU Scientific Library
sci-libs / hdf5 : General purpose library and file format for storing scientific data
virtual / fortran : Virtual for Fortran Compiler
virtual / mpi : Virtual for Message Passing Interface (MPI) v2.0 implementation
Runtime Dependencies
dev-libs / boost : Boost Libraries for C++
sci-biology / uchime : Fast, accurate chimera detection
sci-libs / gsl : The GNU Scientific Library
sci-libs / hdf5 : General purpose library and file format for storing scientific data
virtual / fortran : Virtual for Fortran Compiler
virtual / mpi : Virtual for Message Passing Interface (MPI) v2.0 implementation
Bugs
Change logs
- Repository mirror & CI · gentoo
Merge updates from master - Sam James · gentoo
sci-biology/mothur: Stabilize 1.48.0 amd64, #945569
Signed-off-by: Sam James <sam@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - Sam James · gentoo
sci-biology/mothur: uncomment patch...
Closes: https://bugs.gentoo.org/927495 Signed-off-by: Sam James <sam@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - Sam James · gentoo
sci-biology/mothur: add 1.48.0
Filter LTO too, and no-SA. Not reported upstream as it has a lot of open bugs already and seems low activity. Closes: https://bugs.gentoo.org/862273 Signed-off-by: Sam James <sam@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - Arthur Zamarin · gentoo
sci-biology/mothur: destabilize for ~x86
Signed-off-by: Arthur Zamarin <arthurzam@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - David Seifert · gentoo
sci-biology/mothur: Port to EAPI 7
Package-Manager: Portage-3.0.18, Repoman-3.0.3 Signed-off-by: David Seifert <soap@gentoo.org> - Michael Mair-Keimberger · gentoo
sci-biology/mothur: use HTTPs - Robin H. Johnson · gentoo
Drop $Id$ per council decision in bug #611234.
Signed-off-by: Robin H. Johnson <robbat2@gentoo.org> - Justin Lecher · gentoo
sci-biology/mothur: Drop old
Package-Manager: portage-2.2.21 Signed-off-by: Justin Lecher <jlec@gentoo.org> - Agostino Sarubbo · gentoo
sci-biology/mothur: x86 stable wrt bug #556066
Package-Manager: portage-2.2.20.1 RepoMan-Options: --include-arches="x86" - Robin H. Johnson · gentoo
proj/gentoo: Initial commit
This commit represents a new era for Gentoo: Storing the gentoo-x86 tree in Git, as converted from CVS. This commit is the start of the NEW history. Any historical data is intended to be grafted onto this point. Creation process: 1. Take final CVS checkout snapshot 2. Remove ALL ChangeLog* files 3. Transform all Manifests to thin 4. Remove empty Manifests 5. Convert all stale $Header$/$Id$ CVS keywords to non-expanded Git $Id$ 5.1. Do not touch files with -kb/-ko keyword flags. Signed-off-by: Robin H. Johnson <robbat2@gentoo.org> X-Thanks: Alec Warner <antarus@gentoo.org> - did the GSoC 2006 migration tests X-Thanks: Robin H. Johnson <robbat2@gentoo.org> - infra guy, herding this project X-Thanks: Nguyen Thai Ngoc Duy <pclouds@gentoo.org> - Former Gentoo developer, wrote Git features for the migration X-Thanks: Brian Harring <ferringb@gentoo.org> - wrote much python to improve cvs2svn X-Thanks: Rich Freeman <rich0@gentoo.org> - validation scripts X-Thanks: Patrick Lauer <patrick@gentoo.org> - Gentoo dev, running new 2014 work in migration X-Thanks: Michał Górny <mgorny@gentoo.org> - scripts, QA, nagging X-Thanks: All of other Gentoo developers - many ideas and lots of paint on the bikeshed