{"bugs":[{"bugid":832184,"firstseen":"2022-01-28T10:02:35.606493","severity":"normal","status":"CONFIRMED","summary":"sci-biology\/mrbayes-3.2.7 fails to compile: avxintrin.h:318:1: error: inlining failed in call to always_inline _mm256_mul_ps: target specific option mismatch"}],"categories":[{"categoryid":353,"name":"sci-biology","summary":"The sci-biology category contains software that can be used in biological and related scientific environments."},{"categoryid":381,"name":"sys-libs","summary":"The sys-libs category contains various system-level libraries."},{"categoryid":396,"name":"virtual","summary":"The virtual category contains packages which satisfy virtual dependencies."}],"changelog":[{"authoremail":"repomirrorci@gentoo.org","authorname":"Repository mirror & CI","commitid":"e817756739654c06c8a96e8fb68a3da1ba3af055","committime":"2024-04-30T18:48:55","packageid":49915,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"watermanpaint@posteo.net","authorname":"Lucio Sauer","body":"bump copyright of touched ebuilds to 2024\n\nSigned-off-by: Lucio Sauer \nSigned-off-by: Michał Górny ","commitid":"794061a3298b5716db015defa7b3e2c583b73980","committime":"2024-04-12T10:47:52","packageid":49915,"repoid":1,"summary":"*\/*: inline mirror:\/\/sourceforge"},{"authoremail":"repomirrorci@gentoo.org","authorname":"Repository mirror & CI","commitid":"d51c9d5c19ebb657362f470b725a146d71c2d18f","committime":"2023-05-25T20:02:08","packageid":49915,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"grobian@gentoo.org","authorname":"Fabian Groffen","body":"Signed-off-by: Fabian Groffen ","commitid":"4aebe55f8c434205f2ea3d28ffacb834a401bc1f","committime":"2023-05-25T19:49:16","packageid":49915,"repoid":1,"summary":"*\/*: remove sparc-solaris keyword"},{"authoremail":"repomirrorci@gentoo.org","authorname":"Repository mirror & CI","commitid":"82b37a27e889ff1af7cfc1e3a8c2f06ef8622566","committime":"2022-03-20T19:04:16","packageid":49915,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"sam@gentoo.org","authorname":"Sam James","body":"This can cause build problems for e.g. 32-bit (gcc -m32 ...)\n\nSigned-off-by: Sam James ","commitid":"7761f837e81d76fa9d1637c4d6808e1a88f45f82","committime":"2022-03-20T18:49:38","packageid":49915,"repoid":1,"summary":"sci-biology\/mrbayes: [QA] fix tc-get* quoting"},{"authoremail":"repomirrorci@gentoo.org","authorname":"Repository mirror & CI","commitid":"78f850ab9c49a357adf2f4a597afc44dc67a8c6f","committime":"2022-01-27T16:51:43","packageid":49915,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"andrewammerlaan@gentoo.org","authorname":"Andrew Ammerlaan","body":"Closes: https:\/\/bugs.gentoo.org\/521510\nPackage-Manager: Portage-3.0.30, Repoman-3.0.3\nSigned-off-by: Andrew Ammerlaan ","commitid":"e95dd20d9eaea3e8fa32f9337c8b3beb7ba5eddb","committime":"2022-01-27T16:33:02","packageid":49915,"repoid":1,"summary":"sci-biology\/mrbayes: add version 3.2.7"},{"authoremail":"repomirrorci@gentoo.org","authorname":"Repository mirror & CI","commitid":"3d4eaa9a9790c5956e454eda213b853490da09f7","committime":"2021-08-22T19:51:19","packageid":49915,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"jakov.smolic@sartura.hr","authorname":"Jakov Smolic","body":"Signed-off-by: Jakov Smolic \nSigned-off-by: David Seifert ","commitid":"3151038a1d2b980f87cf46bf6079a119a01ea3cc","committime":"2021-08-22T19:37:18","packageid":49915,"repoid":1,"summary":"sci-biology\/mrbayes: Port to EAPI 8"},{"authoremail":"repomirrorci@gentoo.org","authorname":"Repository mirror & CI","commitid":"1dff16feef2bb9d2ccf6e0e5f2a4f87e02f7a94d","committime":"2021-04-18T06:22:06","packageid":49915,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"sam@gentoo.org","authorname":"Sam James","body":"Package-Manager: Portage-3.0.14-prefix, Repoman-3.0.2\nSigned-off-by: Sam James ","commitid":"644cfb555263d19004fbb9af84c7533b404562e3","committime":"2021-04-16T13:56:42","packageid":49915,"repoid":1,"summary":"sci-biology\/mrbayes: eutils->epatch"},{"authoremail":"repomirrorci@gentoo.org","authorname":"Repository mirror & CI","commitid":"0da74f9e557ec388bdcfe974722f0f8c59012b4f","committime":"2019-12-11T00:25:48","packageid":49915,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"soap@gentoo.org","authorname":"David Seifert","body":"Package-Manager: Portage-2.3.81, Repoman-2.3.20\nSigned-off-by: David Seifert ","commitid":"c55800cb358f245934db72bc33a50b276d345621","committime":"2019-12-10T23:48:22","packageid":49915,"repoid":1,"summary":"sci-biology\/mrbayes: Remove old"},{"authoremail":"repo-qa-checks@gentoo.org","authorname":"Repository QA checks","commitid":"25093d6359f778b8d1052f66ba9e26fc29ded21a","committime":"2017-02-28T20:35:29","packageid":49915,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"robbat2@gentoo.org","authorname":"Robin H. Johnson","body":"Signed-off-by: Robin H. Johnson ","commitid":"61b861acd7b49083dab687e133f30f3331cb7480","committime":"2017-02-28T19:47:27","packageid":49915,"repoid":1,"summary":"Drop $Id$ per council decision in bug #611234."},{"authoremail":"repo-qa-checks@gentoo.org","authorname":"Repository QA checks","commitid":"e5d43d82f580d5cde9db124f78af363ce7588e04","committime":"2016-05-14T23:42:39","packageid":49915,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"soap@gentoo.org","authorname":"David Seifert","body":"Package-Manager: portage-2.2.28","commitid":"0d8b3c19635b79481bb060bf5ea7c6d4e1583807","committime":"2016-05-14T21:51:23","packageid":49915,"repoid":1,"summary":"sci-biology\/mrbayes: Fix QA MissingSlotDep"},{"authoremail":"repo-qa-checks@gentoo.org","authorname":"Repository QA checks","commitid":"945f0d2a26da4f944fd06ad6a874f69d37ce1e06","committime":"2015-08-09T09:26:46","packageid":49915,"repoid":1,"summary":"2015-08-09 09:26:21 UTC"},{"authoremail":"robbat2@gentoo.org","authorname":"Robin H. Johnson","body":"This commit represents a new era for Gentoo:\nStoring the gentoo-x86 tree in Git, as converted from CVS.\n\nThis commit is the start of the NEW history.\nAny historical data is intended to be grafted onto this point.\n\nCreation process:\n1. Take final CVS checkout snapshot\n2. Remove ALL ChangeLog* files\n3. Transform all Manifests to thin\n4. Remove empty Manifests\n5. Convert all stale $Header$\/$Id$ CVS keywords to non-expanded Git $Id$\n5.1. Do not touch files with -kb\/-ko keyword flags.\n\nSigned-off-by: Robin H. Johnson \nX-Thanks: Alec Warner - did the GSoC 2006 migration tests\nX-Thanks: Robin H. Johnson - infra guy, herding this project\nX-Thanks: Nguyen Thai Ngoc Duy - Former Gentoo developer, wrote Git features for the migration\nX-Thanks: Brian Harring - wrote much python to improve cvs2svn\nX-Thanks: Rich Freeman - validation scripts\nX-Thanks: Patrick Lauer - Gentoo dev, running new 2014 work in migration\nX-Thanks: Michał Górny - scripts, QA, nagging\nX-Thanks: All of other Gentoo developers - many ideas and lots of paint on the bikeshed","commitid":"56bd759df1d0c750a065b8c845e93d5dfa6b549d","committime":"2015-08-08T20:49:04","packageid":49915,"repoid":1,"summary":"proj\/gentoo: Initial commit"},{"authoremail":"repo-qa-checks@gentoo.org","authorname":"Repository QA checks","commitid":"a637bd65b7fef8e2be4e7fc6e9097479372e0e2e","committime":"2015-06-19T16:38:33","packageid":49915,"repoid":1,"summary":"2015-06-19 16:35:30 UTC"}],"dependencies":[{"block":false,"categoryid":396,"description":"Virtual for Message Passing Interface (MPI) v2.0 implementation","ebuildids":[541888,737708],"firstseen":"2010-05-04T00:54:45.661860","maintainer":"cluster@gentoo.org","maintainername":"Gentoo Cluster Project","name":"mpi","packageid":42101},{"block":false,"categoryid":381,"description":"Console display library","ebuildids":[541888,737708],"firstseen":"2010-05-04T00:54:45.661860","maintainer":"base-system@gentoo.org","maintainername":"Gentoo Base System","name":"ncurses","packageid":45285},{"block":false,"categoryid":381,"description":"Another cute console display library","ebuildids":[541888,737708],"firstseen":"2010-05-04T00:54:45.661860","maintainer":"base-system@gentoo.org","maintainername":"Gentoo Base System","name":"readline","packageid":53265}],"depending":[],"ebuilds":[{"archs":["~amd64","~amd64-linux","~ppc-macos","~x86","~x86-linux"],"ebuildid":737708,"firstseen":"2022-01-27T17:05:35.212556","license":"GPL-2","moddate":"2023-05-25T20:14:13","packageid":49915,"repoid":1,"slot":"0","uses":["debug","mpi","readline"],"version":"3.2.7"},{"archs":["~amd64","~amd64-linux","~ppc-macos","~x86","~x86-linux"],"ebuildid":541888,"firstseen":"2015-04-17T13:36:07.876201","license":"GPL-2","moddate":"2024-12-17T22:35:47","packageid":49915,"repoid":1,"slot":"0","uses":["debug","mpi","readline"],"version":"3.1.2-r2"}],"masks":[],"package":{"categoryid":353,"description":"Bayesian Inference of Phylogeny","firstseen":"2010-05-04T00:54:45.661860","maintainer":"sci-biology@gentoo.org","maintainername":"Gentoo Biology Project","name":"mrbayes","packageid":49915,"summary":"MrBayes is a program for the Bayesian estimation of phylogeny. Bayesian inference of phylogeny is based upon a quantity called the posterior probability distribution of trees, which is the probability of a tree conditioned on the observations. The conditioning is accomplished using Bayes's theorem. The posterior probability distribution of trees is impossible to calculate analytically; instead, MrBayes uses a simulation technique called Markov chain Monte Carlo (or MCMC) to approximate the posterior probabilities of trees."},"rdependencies":[{"block":false,"categoryid":396,"description":"Virtual for Message Passing Interface (MPI) v2.0 implementation","ebuildids":[541888,737708],"firstseen":"2010-05-04T00:54:45.661860","maintainer":"cluster@gentoo.org","maintainername":"Gentoo Cluster Project","name":"mpi","packageid":42101},{"block":false,"categoryid":381,"description":"Console display library","ebuildids":[541888,737708],"firstseen":"2010-05-04T00:54:45.661860","maintainer":"base-system@gentoo.org","maintainername":"Gentoo Base System","name":"ncurses","packageid":45285},{"block":false,"categoryid":381,"description":"Another cute console display library","ebuildids":[541888,737708],"firstseen":"2010-05-04T00:54:45.661860","maintainer":"base-system@gentoo.org","maintainername":"Gentoo Base System","name":"readline","packageid":53265}],"repos":[{"branch":"master","lastcommit":"651fc8052593c76a95432cb9894d1c0f5deed9e4","name":"gentoo","path":"\/usr\/portage","repoid":1,"upstream":"origin"}],"tracked":false,"urls":["https:\/\/nbisweden.github.io\/MrBayes\/"],"uses":[{"description":"Enable extra debug codepaths, like asserts and extra output. If you want to get meaningful backtraces see https:\/\/wiki.gentoo.org\/wiki\/Project:Quality_Assurance\/Backtraces","isdefault":false,"use":"debug"},{"description":"Add MPI (Message Passing Interface) layer to the apps that support it","isdefault":false,"use":"mpi"},{"description":"Enable support for libreadline, a GNU line-editing library that almost everyone wants","isdefault":false,"use":"readline"}]}