sci-biology / muscle

Multiple sequence comparison by log-expectation

Official package sites : https://www.drive5.com/muscle/ ·

v5.1.0 :: 0 :: gentoo

Modified
License
public-domain
Keywords
~amd64 ~ppc ~x86

v3.8.31 :: 0 :: gentoo

Modified
License
public-domain
Keywords
amd64 ~ppc ~x86

sci-libs / libmuscle : Library for sci-biology/mauve

sci-biology / piler : Analysis of repetitive DNA found in genome sequences

sci-biology / seaview : A graphical multiple sequence alignment editor

sci-chemistry / theseus : Maximum likelihood superpositioning and analysis of macromolecular structures

sci-libs / libmuscle : Library for sci-biology/mauve

927355
sci-biology/muscle-5.1.0 - x86_64-pc-linux-gnu-g++: fatal error: cannot read spec file libgomp.spec: No such file or directory
Repository mirror & CI · gentoo
Merge updates from master
Sam James · gentoo
sci-biology/muscle: fix variable order
Signed-off-by: Sam James <sam@gentoo.org>
Sam James · gentoo
sci-biology/muscle: drop unused flag-o-matic from 5.1.0
Signed-off-by: Sam James <sam@gentoo.org>
Eli Schwartz · gentoo
sci-biology/muscle: add 5.1.0
Major new release, major new build system that is majorly broken. <3 scientific code. This package has not been updated since before the import of gentoo into git, so I shall simply assume this major version is safe. From the homepage, it is a "major rewrite", "based on new algorithms", which is "much more accurate, is often faster, and scales to much larger datasets". I think that's another way of saying "same old program but with fixes". Signed-off-by: Eli Schwartz <eschwartz93@gmail.com> Signed-off-by: Sam James <sam@gentoo.org>
Eli Schwartz · gentoo
sci-biology/muscle: mark as LTO-unsafe, strict-aliasing unsafe
Closes: https://bugs.gentoo.org/862276 Signed-off-by: Eli Schwartz <eschwartz93@gmail.com> Signed-off-by: Sam James <sam@gentoo.org>
Repository mirror & CI · gentoo
Merge updates from master
Arthur Zamarin · gentoo
sci-biology/muscle: destabilize for ~x86
Signed-off-by: Arthur Zamarin <arthurzam@gentoo.org>
Repository mirror & CI · gentoo
Merge updates from master
Michael Mair-Keimberger · gentoo
sci-biology/muscle: use HTTPS
Signed-off-by: Michael Mair-Keimberger <mmk@levelnine.at> Portage 3.0.34 / pkgdev 0.2.1 / pkgcheck 0.10.11 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
Repository mirror & CI · gentoo
Merge updates from master
Georgy Yakovlev · gentoo
sci-biology/muscle: de-stabilize for ~ppc, bug #823768
Bug: https://bugs.gentoo.org/823768 Signed-off-by: Georgy Yakovlev <gyakovlev@gentoo.org>
Repository mirror & CI · gentoo
Merge updates from master
David Seifert · gentoo
sci-biology/muscle: Port to EAPI 7
Package-Manager: Portage-3.0.8, Repoman-3.0.2 Signed-off-by: David Seifert <soap@gentoo.org>
Robin H. Johnson · gentoo
Drop $Id$ per council decision in bug #611234.
Signed-off-by: Robin H. Johnson <robbat2@gentoo.org>
Robin H. Johnson · gentoo
proj/gentoo: Initial commit
This commit represents a new era for Gentoo: Storing the gentoo-x86 tree in Git, as converted from CVS. This commit is the start of the NEW history. Any historical data is intended to be grafted onto this point. Creation process: 1. Take final CVS checkout snapshot 2. Remove ALL ChangeLog* files 3. Transform all Manifests to thin 4. Remove empty Manifests 5. Convert all stale $Header$/$Id$ CVS keywords to non-expanded Git $Id$ 5.1. Do not touch files with -kb/-ko keyword flags. Signed-off-by: Robin H. Johnson <robbat2@gentoo.org> X-Thanks: Alec Warner <antarus@gentoo.org> - did the GSoC 2006 migration tests X-Thanks: Robin H. Johnson <robbat2@gentoo.org> - infra guy, herding this project X-Thanks: Nguyen Thai Ngoc Duy <pclouds@gentoo.org> - Former Gentoo developer, wrote Git features for the migration X-Thanks: Brian Harring <ferringb@gentoo.org> - wrote much python to improve cvs2svn X-Thanks: Rich Freeman <rich0@gentoo.org> - validation scripts X-Thanks: Patrick Lauer <patrick@gentoo.org> - Gentoo dev, running new 2014 work in migration X-Thanks: Michał Górny <mgorny@gentoo.org> - scripts, QA, nagging X-Thanks: All of other Gentoo developers - many ideas and lots of paint on the bikeshed