Versions
v2.2.26-r3 :: 0 :: gentoo
- Modified
- License
- public-domain
- Keywords
- amd64 ppc64 x86 ~alpha ~amd64-linux ~ppc-macos ~x86-linux
- USE flags
- X doc static-libs
USE flags
General
- X
- Add support for X11
- doc
- Add extra documentation (API, Javadoc, etc). It is recommended to enable per package instead of globally
- static-libs
- Build static versions of dynamic libraries as well
Dependencies
app-shells / tcsh : Enhanced version of the Berkeley C shell (csh)
dev-lang / perl : Larry Wall's Practical Extraction and Report Language
media-libs / fontconfig : A library for configuring and customizing font access
media-libs / libpng : Portable Network Graphics library
virtual / glu : Virtual for OpenGL utility library
virtual / opengl : Virtual for OpenGL implementation
virtual / pkgconfig : Virtual for the pkg-config implementation
x11-libs / libICE : X.Org Inter-Client Exchange library
x11-libs / libX11 : X.Org X11 library
x11-libs / libXft : X.Org Xft library
x11-libs / libXmu : X.Org Xmu library
x11-libs / libXt : X.Org X Toolkit Intrinsics library
x11-libs / motif : The Motif user interface component toolkit
Runtime Dependencies
app-shells / tcsh : Enhanced version of the Berkeley C shell (csh)
dev-lang / perl : Larry Wall's Practical Extraction and Report Language
media-libs / fontconfig : A library for configuring and customizing font access
media-libs / libpng : Portable Network Graphics library
virtual / glu : Virtual for OpenGL utility library
virtual / opengl : Virtual for OpenGL implementation
x11-libs / libICE : X.Org Inter-Client Exchange library
x11-libs / libX11 : X.Org X11 library
x11-libs / libXft : X.Org Xft library
x11-libs / libXmu : X.Org Xmu library
x11-libs / libXt : X.Org X Toolkit Intrinsics library
x11-libs / motif : The Motif user interface component toolkit
Depending packages
sci-biology / njplot : A phylogenetic tree drawing program which supports tree rooting
sci-biology / psipred : Protein Secondary Structure Prediction
sci-libs / rosetta-fragments : Fragment library for rosetta
Bugs
- 295584
- sci-biology/ncbi-tools: hardcoded path to seg(1) is wrong
- 457972
- sci-biology/rmblast bundles half of sci-biology/ncbi-tools++
- 586982
- sci-biology/ncbi-tools-2.2.26-r2 - undo ${EPREFIX}${EPREFIX} in ncbi/platform/*
- 607632
- [science overlay] sci-libs/profphd-utils-1.0.10-r1 file collision with sci-biology/ncbi-tools++-12.0.0 on /usr/bin/convert_seq
- 649930
- sci-biology/ncbi-tools-2.2.26-r2 : /.../ld: cannot find -lXp
- 701340
- sci-biology/ncbi-tools-2.2.26-r2 requires libXp if USE="X"
- 710338
- sci-biology/ncbi-tools-2.2.26-r2 : sed: -e expression #9, char 82: unknown option to s
- 715636
- sci-biology/ncbi-tools-2.2.26-r2 : * (no error message)
- 741188
- sci-biology/ncbi-tools-2.2.26-r2 calls commands that do not exist (lsb_release: Command not found.)
- 782790
- sci-biology/ncbi-tools-2.2.26-r2 - ncbi_socket.c: internal compiler error:<snip> Segmentation fault
- 798015
- sci-biology/ncbi-tools-2.2.26-r3 - /.../ld: cannot find -lXp
Change logs
- Repository mirror & CI · gentoo
Merge updates from master - Sam James · gentoo
sci-biology/ncbi-tools: add pkgconfig or pkgconfig-referenced libs deps
Add dependencies for either virtual/pkgconfig, move it into BDEPEND where applicable, or add dependencies for libraries we're trying to find with pkgconfig. Package-Manager: Portage-3.0.18-prefix, Repoman-3.0.3 Signed-off-by: Sam James <sam@gentoo.org> Signed-off-by: David Seifert <soap@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - Sam James · gentoo
sci-biology/ncbi-tools: eutils->epatch
Package-Manager: Portage-3.0.14-prefix, Repoman-3.0.2 Signed-off-by: Sam James <sam@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - Sam James · gentoo
sci-biology/ncbi-tools: add missing pkgconfig (B)DEPEND
Package-Manager: Portage-3.0.18, Repoman-3.0.3 Signed-off-by: Sam James <sam@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - David Seifert · gentoo
*/*: [QA] Remove redundant `|| die` guards
* Since all ebuilds in the tree are EAPI>=4, `|| die` on builtin commands is redundant and dead code. Closes: https://github.com/gentoo/gentoo/pull/13940 Reviewed-by: Ulrich Müller <ulm@gentoo.org> Reviewed-by: Michał Górny <mgorny@gentoo.org> Reviewed-by: Andreas K. Hüttel <dilfridge@gentoo.org> Signed-off-by: David Seifert <soap@gentoo.org> - Michael Mair-Keimberger · gentoo
sci-biology/ncbi-tools: use HTTPs - Robin H. Johnson · gentoo
Drop $Id$ per council decision in bug #611234.
Signed-off-by: Robin H. Johnson <robbat2@gentoo.org> - David Seifert · gentoo
sci-biology/ncbi-tools: Fix overlong DESCRIPTION
Package-Manager: Portage-2.3.3, Repoman-2.3.1 Closes: https://github.com/gentoo/gentoo/pull/3856 - Robin H. Johnson · gentoo
proj/gentoo: Initial commit
This commit represents a new era for Gentoo: Storing the gentoo-x86 tree in Git, as converted from CVS. This commit is the start of the NEW history. Any historical data is intended to be grafted onto this point. Creation process: 1. Take final CVS checkout snapshot 2. Remove ALL ChangeLog* files 3. Transform all Manifests to thin 4. Remove empty Manifests 5. Convert all stale $Header$/$Id$ CVS keywords to non-expanded Git $Id$ 5.1. Do not touch files with -kb/-ko keyword flags. Signed-off-by: Robin H. Johnson <robbat2@gentoo.org> X-Thanks: Alec Warner <antarus@gentoo.org> - did the GSoC 2006 migration tests X-Thanks: Robin H. Johnson <robbat2@gentoo.org> - infra guy, herding this project X-Thanks: Nguyen Thai Ngoc Duy <pclouds@gentoo.org> - Former Gentoo developer, wrote Git features for the migration X-Thanks: Brian Harring <ferringb@gentoo.org> - wrote much python to improve cvs2svn X-Thanks: Rich Freeman <rich0@gentoo.org> - validation scripts X-Thanks: Patrick Lauer <patrick@gentoo.org> - Gentoo dev, running new 2014 work in migration X-Thanks: Michał Górny <mgorny@gentoo.org> - scripts, QA, nagging X-Thanks: All of other Gentoo developers - many ideas and lots of paint on the bikeshed