sci-biology / ncbi-tools

Development toolkit and applications for computational biology, including BLAST

Official package sites : https://www.ncbi.nlm.nih.gov/ ·

v2.2.26-r2 :: 0 :: gentoo

Modified
License
public-domain
Keywords
amd64 ppc64 x86 ~alpha ~amd64-linux ~ppc-macos ~x86-linux
USE flags
X doc static-libs

General

X
Add support for X11
doc
Add extra documentation (API, Javadoc, etc). It is recommended to enable per package instead of globally
static-libs
Build static versions of dynamic libraries as well

app-shells / tcsh : Enhanced version of the Berkeley C shell (csh)

dev-lang / perl : Larry Wall's Practical Extraction and Report Language

media-libs / fontconfig : A library for configuring and customizing font access

media-libs / libpng : Portable Network Graphics library

x11-libs / libICE : X.Org Inter-Client Exchange library

x11-libs / libX11 : X.Org X11 library

x11-libs / libXft : X.Org Xft library

x11-libs / libXmu : X.Org Xmu library

x11-libs / libXt : X.Org X Toolkit Intrinsics library

x11-libs / motif : The Motif user interface component toolkit

app-shells / tcsh : Enhanced version of the Berkeley C shell (csh)

dev-lang / perl : Larry Wall's Practical Extraction and Report Language

media-libs / fontconfig : A library for configuring and customizing font access

media-libs / libpng : Portable Network Graphics library

x11-libs / libICE : X.Org Inter-Client Exchange library

x11-libs / libX11 : X.Org X11 library

x11-libs / libXft : X.Org Xft library

x11-libs / libXmu : X.Org Xmu library

x11-libs / libXt : X.Org X Toolkit Intrinsics library

x11-libs / motif : The Motif user interface component toolkit

sci-biology / ariadne : Protein sequences and profiles comparison

sci-biology / njplot : A phylogenetic tree drawing program which supports tree rooting

sci-biology / psipred : Protein Secondary Structure Prediction

sci-libs / rosetta-fragments : Fragment library for rosetta

295584
sci-biology/ncbi-tools: hardcoded path to seg(1) is wrong
457972
sci-biology/rmblast bundles half of sci-biology/ncbi-tools++
586982
sci-biology/ncbi-tools-2.2.26-r2 - undo ${EPREFIX}${EPREFIX} in ncbi/platform/*
607632
[science overlay] sci-libs/profphd-utils-1.0.10-r1 file collision with sci-biology/ncbi-tools++-12.0.0 on /usr/bin/convert_seq
649930
sci-biology/ncbi-tools-2.2.26-r2 : /.../ld: cannot find -lXp
Michael Mair-Keimberger · gentoo
sci-biology/ncbi-tools: use HTTPs
Robin H. Johnson · gentoo
Drop $Id$ per council decision in bug #611234.
Signed-off-by: Robin H. Johnson <robbat2@gentoo.org>
David Seifert · gentoo
sci-biology/ncbi-tools: Fix overlong DESCRIPTION
Package-Manager: Portage-2.3.3, Repoman-2.3.1 Closes: https://github.com/gentoo/gentoo/pull/3856
Robin H. Johnson · gentoo
proj/gentoo: Initial commit
This commit represents a new era for Gentoo: Storing the gentoo-x86 tree in Git, as converted from CVS. This commit is the start of the NEW history. Any historical data is intended to be grafted onto this point. Creation process: 1. Take final CVS checkout snapshot 2. Remove ALL ChangeLog* files 3. Transform all Manifests to thin 4. Remove empty Manifests 5. Convert all stale $Header$/$Id$ CVS keywords to non-expanded Git $Id$ 5.1. Do not touch files with -kb/-ko keyword flags. Signed-off-by: Robin H. Johnson <robbat2@gentoo.org> X-Thanks: Alec Warner <antarus@gentoo.org> - did the GSoC 2006 migration tests X-Thanks: Robin H. Johnson <robbat2@gentoo.org> - infra guy, herding this project X-Thanks: Nguyen Thai Ngoc Duy <pclouds@gentoo.org> - Former Gentoo developer, wrote Git features for the migration X-Thanks: Brian Harring <ferringb@gentoo.org> - wrote much python to improve cvs2svn X-Thanks: Rich Freeman <rich0@gentoo.org> - validation scripts X-Thanks: Patrick Lauer <patrick@gentoo.org> - Gentoo dev, running new 2014 work in migration X-Thanks: Michał Górny <mgorny@gentoo.org> - scripts, QA, nagging X-Thanks: All of other Gentoo developers - many ideas and lots of paint on the bikeshed