sci-biology / newick-utils

Tools for processing phylogenetic trees

Official package sites : https://web.archive.org/web/20120206012743/http://cegg.unige.ch/newick_utils ·

v1.6-r2 :: 0 :: gentoo

Modified
License
BSD
Keywords
~amd64 ~x86
USE flags
xml

General

xml
Uses dev-libs/libxml2 to handle ornaments

dev-libs / libxml2 : XML C parser and toolkit

dev-games / libnw : Tools and libraries for NWN file manipulation

dev-libs / libxml2 : XML C parser and toolkit

dev-games / libnw : Tools and libraries for NWN file manipulation

836856
sci-biology/newick-utils-1.6-r1 fails tests on MUSL: FAIL: test_nw_gen.sh
944181
sci-biology/newick-utils-1.6-r2 - [libtool] [gcc-15] display.c: error: too many arguments to function destroy_all_rnodes
Repository mirror & CI · gentoo
Merge updates from master
Eli Schwartz · gentoo
sci-biology/newick-utils: update EAPI 7 -> 8
Signed-off-by: Eli Schwartz <eschwartz93@gmail.com> Signed-off-by: Sam James <sam@gentoo.org>
Eli Schwartz · gentoo
sci-biology/newick-utils: update HOMEPAGE, SRC_URI to archive.org
The whole thing is a redirect now to a website with no real info, that points to a github repo without even any tags. Signed-off-by: Eli Schwartz <eschwartz93@gmail.com> Signed-off-by: Sam James <sam@gentoo.org>
Eli Schwartz · gentoo
sci-biology/newick-utils: mark as LTO-unsafe
Closes: https://bugs.gentoo.org/862279 Signed-off-by: Eli Schwartz <eschwartz93@gmail.com> Signed-off-by: Sam James <sam@gentoo.org>
Repository mirror & CI · gentoo
Merge updates from master
David Seifert · gentoo
sci-biology/newick-utils: Port to EAPI 7
* Don't build static libraries by default * Fix GCC 10 / -fno-common * Disable automagic guile and lua Closes: https://bugs.gentoo.org/708534 Closes: https://bugs.gentoo.org/712312 Closes: https://bugs.gentoo.org/727986 Package-Manager: Portage-3.0.8, Repoman-3.0.2 Signed-off-by: David Seifert <soap@gentoo.org>
Robin H. Johnson · gentoo
Drop $Id$ per council decision in bug #611234.
Signed-off-by: Robin H. Johnson <robbat2@gentoo.org>
David Seifert · gentoo
sci-biology/newick-utils: Remove old
Package-Manager: Portage-2.3.3, Repoman-2.3.1 Closes: https://github.com/gentoo/gentoo/pull/3856
David Seifert · gentoo
sci-biology/newick-utils: Version bump to 1.6
Gentoo-Bug: 521644 * Remove use of 'einstall' * EAPI=6 Package-Manager: portage-2.2.26
Robin H. Johnson · gentoo
proj/gentoo: Initial commit
This commit represents a new era for Gentoo: Storing the gentoo-x86 tree in Git, as converted from CVS. This commit is the start of the NEW history. Any historical data is intended to be grafted onto this point. Creation process: 1. Take final CVS checkout snapshot 2. Remove ALL ChangeLog* files 3. Transform all Manifests to thin 4. Remove empty Manifests 5. Convert all stale $Header$/$Id$ CVS keywords to non-expanded Git $Id$ 5.1. Do not touch files with -kb/-ko keyword flags. Signed-off-by: Robin H. Johnson <robbat2@gentoo.org> X-Thanks: Alec Warner <antarus@gentoo.org> - did the GSoC 2006 migration tests X-Thanks: Robin H. Johnson <robbat2@gentoo.org> - infra guy, herding this project X-Thanks: Nguyen Thai Ngoc Duy <pclouds@gentoo.org> - Former Gentoo developer, wrote Git features for the migration X-Thanks: Brian Harring <ferringb@gentoo.org> - wrote much python to improve cvs2svn X-Thanks: Rich Freeman <rich0@gentoo.org> - validation scripts X-Thanks: Patrick Lauer <patrick@gentoo.org> - Gentoo dev, running new 2014 work in migration X-Thanks: Michał Górny <mgorny@gentoo.org> - scripts, QA, nagging X-Thanks: All of other Gentoo developers - many ideas and lots of paint on the bikeshed