{"bugs":[{"bugid":944917,"firstseen":"2024-11-25T11:03:52.341341","severity":"normal","status":"CONFIRMED","summary":"sci-biology\/paml-4.10.7 fails to compile: treesub.c:8631:5: error: conflicting types for ProcessNodeAnnotation; have int(int )"}],"categories":[{"categoryid":353,"name":"sci-biology","summary":"The sci-biology category contains software that can be used in biological and related scientific environments."}],"changelog":[{"authoremail":"repomirrorci@gentoo.org","authorname":"Repository mirror & CI","commitid":"4f3cfa1a064a104ae120f73aaaec8959bacc8791","committime":"2024-05-08T17:07:40","packageid":54907,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"sam@gentoo.org","authorname":"Sam James","body":"Unclear why it was dropped.\n\nSigned-off-by: Sam James ","commitid":"c80ef338dca21186181598572dd02a4cb8daf68e","committime":"2024-05-08T16:55:53","packageid":54907,"repoid":1,"summary":"sci-biology\/paml: restore ~x86"},{"authoremail":"sam@gentoo.org","authorname":"Sam James","body":"Signed-off-by: Sam James ","commitid":"26ed15e9e7d3fea5414e009936290fbb52e0c0a9","committime":"2024-05-08T16:55:15","packageid":54907,"repoid":1,"summary":"sci-biology\/paml: respect CC, CPPFLAGS, LDFLAGS"},{"authoremail":"jy6x2b32pie9@yahoo.com","authorname":"NHOrus","body":"Project source is now hosted on github.\n\nCloses: https:\/\/bugs.gentoo.org\/831488\nCloses: https:\/\/bugs.gentoo.org\/919885\nSigned-off-by: NHOrus \nCloses: https:\/\/github.com\/gentoo\/gentoo\/pull\/36048\nSigned-off-by: Sam James ","commitid":"8a73a8d755084a19bb9071502667bf7783f86baa","committime":"2024-04-01T18:08:48","packageid":54907,"repoid":1,"summary":"sci-biology\/paml: add 4.10.7"},{"authoremail":"repomirrorci@gentoo.org","authorname":"Repository mirror & CI","commitid":"e332bcf48978c21cd488743047c02d61bc77bcce","committime":"2020-11-01T19:05:14","packageid":54907,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"soap@gentoo.org","authorname":"David Seifert","body":"Closes: https:\/\/bugs.gentoo.org\/706708\nPackage-Manager: Portage-3.0.8, Repoman-3.0.2\nSigned-off-by: David Seifert ","commitid":"5e71680b7a85431b46e92a2bb86e9f0507fcee3e","committime":"2020-11-01T18:35:56","packageid":54907,"repoid":1,"summary":"sci-biology\/paml: Remove old 4.4c-r1"},{"authoremail":"soap@gentoo.org","authorname":"David Seifert","body":"Bug: https:\/\/bugs.gentoo.org\/706708\nPackage-Manager: Portage-3.0.8, Repoman-3.0.2\nSigned-off-by: David Seifert ","commitid":"9d4c4862d17a28af87e503a3f30b866efd544aad","committime":"2020-11-01T18:35:53","packageid":54907,"repoid":1,"summary":"sci-biology\/paml: Version bump to 4.9j"},{"authoremail":"repo-qa-checks@gentoo.org","authorname":"Repository QA checks","commitid":"25093d6359f778b8d1052f66ba9e26fc29ded21a","committime":"2017-02-28T20:35:29","packageid":54907,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"robbat2@gentoo.org","authorname":"Robin H. Johnson","body":"Signed-off-by: Robin H. Johnson ","commitid":"61b861acd7b49083dab687e133f30f3331cb7480","committime":"2017-02-28T19:47:27","packageid":54907,"repoid":1,"summary":"Drop $Id$ per council decision in bug #611234."},{"authoremail":"repo-qa-checks@gentoo.org","authorname":"Repository QA checks","commitid":"945f0d2a26da4f944fd06ad6a874f69d37ce1e06","committime":"2015-08-09T09:26:46","packageid":54907,"repoid":1,"summary":"2015-08-09 09:26:21 UTC"},{"authoremail":"robbat2@gentoo.org","authorname":"Robin H. Johnson","body":"This commit represents a new era for Gentoo:\nStoring the gentoo-x86 tree in Git, as converted from CVS.\n\nThis commit is the start of the NEW history.\nAny historical data is intended to be grafted onto this point.\n\nCreation process:\n1. Take final CVS checkout snapshot\n2. Remove ALL ChangeLog* files\n3. Transform all Manifests to thin\n4. Remove empty Manifests\n5. Convert all stale $Header$\/$Id$ CVS keywords to non-expanded Git $Id$\n5.1. Do not touch files with -kb\/-ko keyword flags.\n\nSigned-off-by: Robin H. Johnson \nX-Thanks: Alec Warner - did the GSoC 2006 migration tests\nX-Thanks: Robin H. Johnson - infra guy, herding this project\nX-Thanks: Nguyen Thai Ngoc Duy - Former Gentoo developer, wrote Git features for the migration\nX-Thanks: Brian Harring - wrote much python to improve cvs2svn\nX-Thanks: Rich Freeman - validation scripts\nX-Thanks: Patrick Lauer - Gentoo dev, running new 2014 work in migration\nX-Thanks: Michał Górny - scripts, QA, nagging\nX-Thanks: All of other Gentoo developers - many ideas and lots of paint on the bikeshed","commitid":"56bd759df1d0c750a065b8c845e93d5dfa6b549d","committime":"2015-08-08T20:49:04","packageid":54907,"repoid":1,"summary":"proj\/gentoo: Initial commit"},{"authoremail":"repo-qa-checks@gentoo.org","authorname":"Repository QA checks","commitid":"a637bd65b7fef8e2be4e7fc6e9097479372e0e2e","committime":"2015-06-19T16:38:33","packageid":54907,"repoid":1,"summary":"2015-06-19 16:35:30 UTC"}],"dependencies":[],"depending":[],"ebuilds":[{"archs":["~amd64","~x86"],"ebuildid":825398,"firstseen":"2024-05-08T18:18:10.407427","license":"free-noncomm","moddate":"2024-12-17T22:35:47","packageid":54907,"repoid":1,"slot":"0","uses":[],"version":"4.10.7"},{"archs":["~amd64","~x86"],"ebuildid":690568,"firstseen":"2020-11-01T19:19:41.272296","license":"free-noncomm","moddate":"2024-12-17T22:35:47","packageid":54907,"repoid":1,"slot":"0","uses":[],"version":"4.9j"}],"masks":[],"package":{"categoryid":353,"description":"Phylogenetic Analysis by Maximum Likelihood","firstseen":"2010-05-04T00:54:45.661860","maintainer":"sci-biology@gentoo.org","maintainername":"Gentoo Biology Project","name":"paml","packageid":54907},"rdependencies":[],"repos":[{"branch":"master","lastcommit":"68bd347a2eb1e6a4a09e30e9b50840d7a3af8cc8","name":"gentoo","path":"\/usr\/portage","repoid":1,"upstream":"origin"}],"tracked":false,"urls":["https:\/\/abacus.gene.ucl.ac.uk\/software\/paml.html"],"uses":[]}