{"bugs":[{"bugid":944876,"firstseen":"2025-07-11T02:48:40.189262","severity":"normal","status":"CONFIRMED","summary":"sci-biology\/phyml-2.4.5-r4 fails to compile: optimiz.c:1296:7: error: too many arguments to function func"},{"bugid":945724,"firstseen":"2025-07-11T02:48:40.189262","severity":"normal","status":"CONFIRMED","summary":"sci-biology\/phyml-2.4.5-r4 fails to compile: optimiz.c:1199:14: error: passing argument 6 of BFGS from incompatible pointer type [-Wincompatible-pointer-types]"}],"categories":[{"categoryid":353,"name":"sci-biology","summary":"The sci-biology category contains software that can be used in biological and related scientific environments."}],"changelog":[{"authoremail":"repomirrorci@gentoo.org","authorname":"Repository mirror & CI","commitid":"f2979793991144637956e4225ce4d0235900c1a2","committime":"2023-06-09T15:16:56","packageid":47059,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"arthurzam@gentoo.org","authorname":"Arthur Zamarin","body":"Signed-off-by: Arthur Zamarin ","commitid":"1af4d98b20527bc460eaf1c39bf4f44df89ebd33","committime":"2023-06-03T14:46:16","packageid":47059,"repoid":1,"summary":"sci-biology\/phyml: destabilize for ~x86"},{"authoremail":"repomirrorci@gentoo.org","authorname":"Repository mirror & CI","commitid":"af6f0e8ef0bcb907ba1d0760fbc87f04990100a3","committime":"2022-07-07T20:01:37","packageid":47059,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"soap@gentoo.org","authorname":"David Seifert","body":"Signed-off-by: David Seifert ","commitid":"3b223ffb668ba126802b80bec18d831256533b9f","committime":"2022-07-07T19:57:05","packageid":47059,"repoid":1,"summary":"sci-biology\/phyml: update EAPI 6 -> 8"},{"authoremail":"repomirrorci@gentoo.org","authorname":"Repository mirror & CI","commitid":"39da18b49f0f1c5486a1cddc64d32bac28abc59b","committime":"2021-11-19T00:07:44","packageid":47059,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"gyakovlev@gentoo.org","authorname":"Georgy Yakovlev","body":"Bug: https:\/\/bugs.gentoo.org\/823768\nSigned-off-by: Georgy Yakovlev ","commitid":"5962e374169cb166ee9747e4fdb260b1898e16a6","committime":"2021-11-18T23:44:48","packageid":47059,"repoid":1,"summary":"sci-biology\/phyml: de-stabilize for ~ppc, bug #823768"},{"authoremail":"repo-qa-checks@gentoo.org","authorname":"Repository QA checks","commitid":"25093d6359f778b8d1052f66ba9e26fc29ded21a","committime":"2017-02-28T20:35:29","packageid":47059,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"robbat2@gentoo.org","authorname":"Robin H. Johnson","body":"Signed-off-by: Robin H. Johnson ","commitid":"61b861acd7b49083dab687e133f30f3331cb7480","committime":"2017-02-28T19:47:27","packageid":47059,"repoid":1,"summary":"Drop $Id$ per council decision in bug #611234."},{"authoremail":"repo-qa-checks@gentoo.org","authorname":"Repository QA checks","commitid":"4a224c038e4263e9ca434347030b31cc8855e226","committime":"2017-02-25T20:32:18","packageid":47059,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"soap@gentoo.org","authorname":"David Seifert","body":"Package-Manager: Portage-2.3.3, Repoman-2.3.1","commitid":"efcfc0c566bab9663adf112beb9f02051a02c91a","committime":"2017-02-25T20:00:12","packageid":47059,"repoid":1,"summary":"sci-biology\/phyml: Modernise to EAPI 6"},{"authoremail":"repo-qa-checks@gentoo.org","authorname":"Repository QA checks","commitid":"945f0d2a26da4f944fd06ad6a874f69d37ce1e06","committime":"2015-08-09T09:26:46","packageid":47059,"repoid":1,"summary":"2015-08-09 09:26:21 UTC"},{"authoremail":"robbat2@gentoo.org","authorname":"Robin H. Johnson","body":"This commit represents a new era for Gentoo:\nStoring the gentoo-x86 tree in Git, as converted from CVS.\n\nThis commit is the start of the NEW history.\nAny historical data is intended to be grafted onto this point.\n\nCreation process:\n1. Take final CVS checkout snapshot\n2. Remove ALL ChangeLog* files\n3. Transform all Manifests to thin\n4. Remove empty Manifests\n5. Convert all stale $Header$\/$Id$ CVS keywords to non-expanded Git $Id$\n5.1. Do not touch files with -kb\/-ko keyword flags.\n\nSigned-off-by: Robin H. Johnson \nX-Thanks: Alec Warner - did the GSoC 2006 migration tests\nX-Thanks: Robin H. Johnson - infra guy, herding this project\nX-Thanks: Nguyen Thai Ngoc Duy - Former Gentoo developer, wrote Git features for the migration\nX-Thanks: Brian Harring - wrote much python to improve cvs2svn\nX-Thanks: Rich Freeman - validation scripts\nX-Thanks: Patrick Lauer - Gentoo dev, running new 2014 work in migration\nX-Thanks: Michał Górny - scripts, QA, nagging\nX-Thanks: All of other Gentoo developers - many ideas and lots of paint on the bikeshed","commitid":"56bd759df1d0c750a065b8c845e93d5dfa6b549d","committime":"2015-08-08T20:49:04","packageid":47059,"repoid":1,"summary":"proj\/gentoo: Initial commit"},{"authoremail":"repo-qa-checks@gentoo.org","authorname":"Repository QA checks","commitid":"a637bd65b7fef8e2be4e7fc6e9097479372e0e2e","committime":"2015-06-19T16:38:33","packageid":47059,"repoid":1,"summary":"2015-06-19 16:35:30 UTC"}],"dependencies":[],"depending":[{"block":false,"categoryid":353,"description":"A graphical multiple sequence alignment editor","ebuildids":[849074,849074],"firstseen":"2010-05-04T00:54:45.661860","maintainer":"sci-biology@gentoo.org","maintainername":"Gentoo Biology Project","name":"seaview","packageid":54725,"summary":"SeaView is a graphical multiple sequence alignment editor developped by Manolo Gouy. SeaView is able to read and write various alignment formats (NEXUS, MSF, CLUSTAL, FASTA, PHYLIP, MASE). It allows to manually edit the alignment, and also to run DOT-PLOT or CLUSTALW programs to locally improve the alignment."}],"ebuilds":[{"archs":["amd64","~ppc","~x86"],"ebuildid":755473,"firstseen":"2022-07-07T21:10:47.213865","license":"GPL-2","moddate":"2026-03-22T20:20:57","packageid":47059,"repoid":1,"slot":"0","uses":[],"version":"2.4.5-r4"}],"masks":[],"package":{"categoryid":353,"description":"Estimation of large phylogenies by maximum likelihood","firstseen":"2010-05-04T00:54:45.661860","maintainer":"sci-biology@gentoo.org","maintainername":"Gentoo Biology Project","name":"phyml","packageid":47059,"summary":"Phyml is a simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. Given input sequence files, it estimates phylogenies using maximum likelihood, and is capable of processing large amounts of phylogenetic data."},"rdependencies":[],"repos":[{"branch":"master","lastcommit":"1f58741385367db432e79500a838ced67b2a773d","name":"gentoo","path":"\/usr\/portage","repoid":1,"upstream":"origin"}],"tracked":false,"urls":["http:\/\/atgc.lirmm.fr\/phyml\/"],"uses":[]}