{"bugs":[{"bugid":589068,"firstseen":"2025-07-11T02:48:40.189262","severity":"normal","status":"UNCONFIRMED","summary":"sci-biology\/plink-1.90_pre140514 - plink_matrix.h:52:19: fatal error: cblas.h: No such file or directory"},{"bugid":595984,"firstseen":"2025-07-11T02:48:40.189262","severity":"normal","status":"CONFIRMED","summary":"sci-biology\/plink-1.90_pre140514 : plink_cluster.c:(.text+): undefined reference to `dsyevr_'"},{"bugid":689202,"firstseen":"2025-07-11T02:48:40.189262","severity":"normal","status":"CONFIRMED","summary":"sci-biology\/plink-1.90_pre140514 : plink_calc.c:(.text+): undefined reference to cblas_dger"},{"bugid":725310,"firstseen":"2025-07-11T02:48:40.189262","severity":"normal","status":"CONFIRMED","summary":"sci-biology\/plink-1.90_pre140514 does not respect LDFLAGS"}],"categories":[{"categoryid":353,"name":"sci-biology","summary":"The sci-biology category contains software that can be used in biological and related scientific environments."},{"categoryid":396,"name":"virtual","summary":"The virtual category contains packages which satisfy virtual dependencies."}],"changelog":[{"authoremail":"repomirrorci@gentoo.org","authorname":"Repository mirror & CI","commitid":"00b4cc6bb3b864fbeaa6dca1da399c3716afed16","committime":"2025-11-04T09:50:46","packageid":44464,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"mgorny@gentoo.org","authorname":"Michał Górny","body":"Done via:\n\n```\ngit grep -l virtual\/zlib$ | xargs sed -i -e 's@virtual\/zlib$@&:=@'\n```\n\nSigned-off-by: Michał Górny ","commitid":"6a3644bf2f9aace46ad9bbab2e4f3bccd747079e","committime":"2025-11-04T09:36:27","packageid":44464,"repoid":1,"summary":"*\/*: Add := to virtual\/zlib deps, part 1"},{"authoremail":"repomirrorci@gentoo.org","authorname":"Repository mirror & CI","commitid":"5a1adb610b1d91ab6683cbe671e266f424224c16","committime":"2025-11-04T08:35:48","packageid":44464,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"mgorny@gentoo.org","authorname":"Michał Górny","body":"Update done using:\n\n```\ngit grep -l sys-libs\/zlib dev-* | xargs sed -i -e s@sys-libs\/zlib@virtual\/zlib@g\ngit diff --name-only | xargs copybump\ngit diff --name-only | xargs grep -l PYTHON_COMPAT | xargs gpy-impl -@dead\npkgcheck scan --commits -c SourcingCheck,VisibilityCheck --exit error\n```\n\nSigned-off-by: Michał Górny ","commitid":"f1351833569f8b22abc3dc9e74abeed7e8641096","committime":"2025-11-04T08:17:06","packageid":44464,"repoid":1,"summary":"sci-*\/*: update for virtual\/zlib"},{"authoremail":"repomirrorci@gentoo.org","authorname":"Repository mirror & CI","commitid":"82b37a27e889ff1af7cfc1e3a8c2f06ef8622566","committime":"2022-03-20T19:04:16","packageid":44464,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"sam@gentoo.org","authorname":"Sam James","body":"This can cause build problems for e.g. 32-bit (gcc -m32 ...)\n\nSigned-off-by: Sam James ","commitid":"d781456f57fcaeec251e9adfc5b3bbce087f6410","committime":"2022-03-20T18:49:41","packageid":44464,"repoid":1,"summary":"sci-biology\/plink: [QA] fix tc-get* quoting"},{"authoremail":"repomirrorci@gentoo.org","authorname":"Repository mirror & CI","commitid":"3d4eaa9a9790c5956e454eda213b853490da09f7","committime":"2021-08-22T19:51:19","packageid":44464,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"jakov.smolic@sartura.hr","authorname":"Jakov Smolic","body":"Signed-off-by: Jakov Smolic \nSigned-off-by: David Seifert ","commitid":"946948c8d23cfdc67d6f877730a5a6986fdf94c7","committime":"2021-08-22T19:37:17","packageid":44464,"repoid":1,"summary":"sci-biology\/plink: Port to EAPI 8"},{"authoremail":"repomirrorci@gentoo.org","authorname":"Repository mirror & CI","commitid":"5938f2c30abac366b7520b6ea0ca9be7375cdaba","committime":"2021-06-18T21:20:03","packageid":44464,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"sam@gentoo.org","authorname":"Sam James","body":"Signed-off-by: Sam James \nSigned-off-by: David Seifert ","commitid":"4c10dee6a9d1fe5986611685758e59724e60c2cf","committime":"2021-06-18T21:05:36","packageid":44464,"repoid":1,"summary":"sci-biology\/plink: include DEPEND in RDEPEND"},{"authoremail":"repomirrorci@gentoo.org","authorname":"Repository mirror & CI","commitid":"1dff16feef2bb9d2ccf6e0e5f2a4f87e02f7a94d","committime":"2021-04-18T06:22:06","packageid":44464,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"sam@gentoo.org","authorname":"Sam James","body":"Package-Manager: Portage-3.0.18-prefix, Repoman-3.0.3\nSigned-off-by: Sam James ","commitid":"e8e28c1ef937f230641f43c0fee859bd6c773ea3","committime":"2021-04-16T19:34:59","packageid":44464,"repoid":1,"summary":"sci-biology\/plink: eutils--"},{"authoremail":"repomirrorci@gentoo.org","authorname":"Repository mirror & CI","commitid":"0da74f9e557ec388bdcfe974722f0f8c59012b4f","committime":"2019-12-11T00:25:48","packageid":44464,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"soap@gentoo.org","authorname":"David Seifert","body":"Package-Manager: Portage-2.3.81, Repoman-2.3.20\nSigned-off-by: David Seifert ","commitid":"03d68993ae99b4ef037f5f4e60e1837420bb4744","committime":"2019-12-10T23:48:19","packageid":44464,"repoid":1,"summary":"sci-biology\/plink: Remove old"},{"authoremail":"repo-qa-checks@gentoo.org","authorname":"Repository QA checks","commitid":"25093d6359f778b8d1052f66ba9e26fc29ded21a","committime":"2017-02-28T20:35:29","packageid":44464,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"robbat2@gentoo.org","authorname":"Robin H. Johnson","body":"Signed-off-by: Robin H. Johnson ","commitid":"61b861acd7b49083dab687e133f30f3331cb7480","committime":"2017-02-28T19:47:27","packageid":44464,"repoid":1,"summary":"Drop $Id$ per council decision in bug #611234."},{"authoremail":"repo-qa-checks@gentoo.org","authorname":"Repository QA checks","commitid":"945f0d2a26da4f944fd06ad6a874f69d37ce1e06","committime":"2015-08-09T09:26:46","packageid":44464,"repoid":1,"summary":"2015-08-09 09:26:21 UTC"},{"authoremail":"robbat2@gentoo.org","authorname":"Robin H. Johnson","body":"This commit represents a new era for Gentoo:\nStoring the gentoo-x86 tree in Git, as converted from CVS.\n\nThis commit is the start of the NEW history.\nAny historical data is intended to be grafted onto this point.\n\nCreation process:\n1. Take final CVS checkout snapshot\n2. Remove ALL ChangeLog* files\n3. Transform all Manifests to thin\n4. Remove empty Manifests\n5. Convert all stale $Header$\/$Id$ CVS keywords to non-expanded Git $Id$\n5.1. Do not touch files with -kb\/-ko keyword flags.\n\nSigned-off-by: Robin H. Johnson \nX-Thanks: Alec Warner - did the GSoC 2006 migration tests\nX-Thanks: Robin H. Johnson - infra guy, herding this project\nX-Thanks: Nguyen Thai Ngoc Duy - Former Gentoo developer, wrote Git features for the migration\nX-Thanks: Brian Harring - wrote much python to improve cvs2svn\nX-Thanks: Rich Freeman - validation scripts\nX-Thanks: Patrick Lauer - Gentoo dev, running new 2014 work in migration\nX-Thanks: Michał Górny - scripts, QA, nagging\nX-Thanks: All of other Gentoo developers - many ideas and lots of paint on the bikeshed","commitid":"56bd759df1d0c750a065b8c845e93d5dfa6b549d","committime":"2015-08-08T20:49:04","packageid":44464,"repoid":1,"summary":"proj\/gentoo: Initial commit"},{"authoremail":"repo-qa-checks@gentoo.org","authorname":"Repository QA checks","commitid":"a637bd65b7fef8e2be4e7fc6e9097479372e0e2e","committime":"2015-06-19T16:38:33","packageid":44464,"repoid":1,"summary":"2015-06-19 16:35:30 UTC"}],"dependencies":[{"block":false,"categoryid":396,"description":"Virtual for BLAS C implementation","ebuildids":[515673],"firstseen":"2010-05-04T00:54:45.661860","maintainer":"sci@gentoo.org","maintainername":"Gentoo Science Project","name":"cblas","packageid":47056},{"block":false,"categoryid":396,"description":"Virtual for Linear Algebra Package FORTRAN 77 (LAPACK) implementation","ebuildids":[515673],"firstseen":"2010-05-04T00:54:45.661860","maintainer":"sci@gentoo.org","maintainername":"Gentoo Science Project","name":"lapack","packageid":55481},{"block":false,"categoryid":396,"description":"Virtual for libz.so providers","ebuildids":[515673],"firstseen":"2025-11-04T07:31:41.418357","name":"zlib","packageid":78605}],"depending":[],"ebuilds":[{"archs":["~amd64","~x86"],"ebuildid":515673,"firstseen":"2014-05-20T13:36:07.954840","license":"GPL-2","moddate":"2026-03-22T20:20:57","packageid":44464,"repoid":1,"slot":"0","uses":[],"version":"1.90_pre140514"}],"masks":[],"package":{"categoryid":353,"description":"Whole genome association analysis toolset","firstseen":"2010-05-04T00:54:45.661860","maintainer":"sci-biology@gentoo.org","maintainername":"Gentoo Biology Project","name":"plink","packageid":44464},"rdependencies":[{"block":false,"categoryid":396,"description":"Virtual for BLAS C implementation","ebuildids":[515673],"firstseen":"2010-05-04T00:54:45.661860","maintainer":"sci@gentoo.org","maintainername":"Gentoo Science Project","name":"cblas","packageid":47056},{"block":false,"categoryid":396,"description":"Virtual for Linear Algebra Package FORTRAN 77 (LAPACK) implementation","ebuildids":[515673],"firstseen":"2010-05-04T00:54:45.661860","maintainer":"sci@gentoo.org","maintainername":"Gentoo Science Project","name":"lapack","packageid":55481},{"block":false,"categoryid":396,"description":"Virtual for libz.so providers","ebuildids":[515673],"firstseen":"2025-11-04T07:31:41.418357","name":"zlib","packageid":78605}],"repos":[{"branch":"master","lastcommit":"52197549fd3431fa256b8edbafdcd3702dd0e134","name":"gentoo","path":"\/usr\/portage","repoid":1,"upstream":"origin"}],"tracked":false,"urls":["http:\/\/pngu.mgh.harvard.edu\/~purcell\/plink\/"],"uses":[]}