Versions
v9999 :: 0 :: gentoo
- Modified
- License
- MIT
- USE flags
- test
v0.22.1 :: 0 :: gentoo
- Modified
- License
- MIT
- Keywords
- ~amd64 ~x86
- USE flags
- test
USE flags
General
- test
- Enable dependencies and/or preparations necessary to run tests (usually controlled by FEATURES=test but can be toggled independently)
python_targets
- python3_10
- Build with Python 3.10
- python3_11
- Build with Python 3.11
- python3_12
- Build with Python 3.12
Dependencies
dev-python / cython : A Python to C compiler
dev-python / setuptools : Collection of extensions to Distutils
sci-libs / htslib : C library for high-throughput sequencing data formats
Runtime Dependencies
dev-lang / python : Freethreading (no-GIL) version of Python programming language
sci-libs / htslib : C library for high-throughput sequencing data formats
Bugs
- 910017
- sci-biology/pysam-0.22.1: needs to use PEP517 build (DistutilsNonPEP517Build)
Change logs
- Repository mirror & CI · gentoo
Merge updates from master - David Seifert · gentoo
sci-biology/pysam: drop 0.21.0
Closes: https://bugs.gentoo.org/923243 Closes: https://bugs.gentoo.org/927872 Closes: https://bugs.gentoo.org/929754 Signed-off-by: David Seifert <soap@gentoo.org> - David Seifert · gentoo
sci-biology/pysam: add 0.22.1
Signed-off-by: David Seifert <soap@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - David Seifert · gentoo
sci-biology/pysam: fix build with cython 3
Closes: https://bugs.gentoo.org/898730 Signed-off-by: David Seifert <soap@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - David Seifert · gentoo
sci-biology/pysam: drop 0.20.0
Closes: https://bugs.gentoo.org/836857 Signed-off-by: David Seifert <soap@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - David Seifert · gentoo
sci-biology/pysam: add 0.21.0
Bug: https://bugs.gentoo.org/836857 Signed-off-by: David Seifert <soap@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - David Seifert · gentoo
sci-biology/pysam: add 9999
Signed-off-by: David Seifert <soap@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - David Seifert · gentoo
sci-biology/pysam: drop 0.19.1
Signed-off-by: David Seifert <soap@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - David Seifert · gentoo
sci-biology/pysam: add 0.20.0
Signed-off-by: David Seifert <soap@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - David Seifert · gentoo
*/*: remove py3.8 from PYTHON_COMPAT
Signed-off-by: David Seifert <soap@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - David Seifert · gentoo
sci-biology/pysam: enable py3.11
Signed-off-by: David Seifert <soap@gentoo.org> - David Seifert · gentoo
sci-biology/pysam: drop 0.17.0
Signed-off-by: David Seifert <soap@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - David Seifert · gentoo
sci-biology/pysam: add 0.19.1
Signed-off-by: David Seifert <soap@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - David Seifert · gentoo
sci-biology/pysam: drop 0.16.0.1-r1
Closes: https://bugs.gentoo.org/812242 Signed-off-by: David Seifert <soap@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - Arthur Zamarin · gentoo
sci-biology/pysam: block <setuptools-58 for 0.16.0.1
Was fixed for 0.17.0 Bug: https://bugs.gentoo.org/812242 Signed-off-by: Arthur Zamarin <arthurzam@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - David Seifert · gentoo
sci-biology/pysam: add 0.17.0
Signed-off-by: David Seifert <soap@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - Michał Górny · gentoo
*/*: Remove obsolete values from PYTHON_COMPAT
Signed-off-by: Michał Górny <mgorny@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - David Seifert · gentoo
sci-biology/pysam: Remove old
Closes: https://bugs.gentoo.org/645060 Closes: https://bugs.gentoo.org/646986 Closes: https://bugs.gentoo.org/718472 Package-Manager: Portage-3.0.1, Repoman-2.3.23 Signed-off-by: David Seifert <soap@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - David Seifert · gentoo
sci-biology/pysam: Bump to 0.16.0.1
Bug: https://bugs.gentoo.org/645060 Bug: https://bugs.gentoo.org/646986 Bug: https://bugs.gentoo.org/718472 Package-Manager: Portage-3.0.1, Repoman-2.3.23 Signed-off-by: David Seifert <soap@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - Michał Górny · gentoo
sci-biology/pysam: Remove py2
Signed-off-by: Michał Górny <mgorny@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - Michał Górny · gentoo
*/*: Clean PYTHON_COMPAT of obsolete impls
Closes: https://github.com/gentoo/gentoo/pull/14246 Signed-off-by: Michał Górny <mgorny@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - Michał Górny · gentoo
*/*: Remove python3_4 PYTHON_COMPAT correctly
Signed-off-by: Michał Górny <mgorny@gentoo.org> - Michael Mair-Keimberger · gentoo
update pypi HOMEPAGE to avoid redirection
Closes: https://github.com/gentoo/gentoo/pull/8080 - Mike Gilbert · gentoo
Replace pypi.python.org with pypi.org in HOMEPAGE
Bug: https://bugs.gentoo.org/653540 - David Seifert · gentoo
sci-biology/pysam: Remove old
Package-Manager: Portage-2.3.8, Repoman-2.3.3 - David Seifert · gentoo
sci-biology/pysam: Version bump to 0.12.0.1
Package-Manager: Portage-2.3.8, Repoman-2.3.3 - David Seifert · gentoo
sci-biology/pysam: Fix broken relative -I
Bug: https://bugs.gentoo.org/show_bug.cgi?id=629670 Package-Manager: Portage-2.3.8, Repoman-2.3.3 - David Seifert · gentoo
sci-biology/pysam: Remove old
Package-Manager: Portage-2.3.8, Repoman-2.3.3 Closes: https://github.com/gentoo/gentoo/pull/5593 - David Seifert · gentoo
sci-biology/pysam: Bump to 0.12
Package-Manager: Portage-2.3.8, Repoman-2.3.3 - Robin H. Johnson · gentoo
Drop $Id$ per council decision in bug #611234.
Signed-off-by: Robin H. Johnson <robbat2@gentoo.org> - David Seifert · gentoo
sci-biology/pysam: Remove old
Package-Manager: portage-2.2.28 - David Seifert · gentoo
sci-biology/pysam: Version bump, add py3 support
Package-Manager: portage-2.2.28 - Justin Lecher · gentoo
Convert URIs for googlecode.com to https
Signed-off-by: Justin Lecher <jlec@gentoo.org> - Justin Lecher · gentoo
Enable https for all google URIs
Signed-off-by: Justin Lecher <jlec@gentoo.org> - Justin Lecher · gentoo
Use https by default
Signed-off-by: Justin Lecher <jlec@gentoo.org> - Robin H. Johnson · gentoo
proj/gentoo: Initial commit
This commit represents a new era for Gentoo: Storing the gentoo-x86 tree in Git, as converted from CVS. This commit is the start of the NEW history. Any historical data is intended to be grafted onto this point. Creation process: 1. Take final CVS checkout snapshot 2. Remove ALL ChangeLog* files 3. Transform all Manifests to thin 4. Remove empty Manifests 5. Convert all stale $Header$/$Id$ CVS keywords to non-expanded Git $Id$ 5.1. Do not touch files with -kb/-ko keyword flags. Signed-off-by: Robin H. Johnson <robbat2@gentoo.org> X-Thanks: Alec Warner <antarus@gentoo.org> - did the GSoC 2006 migration tests X-Thanks: Robin H. Johnson <robbat2@gentoo.org> - infra guy, herding this project X-Thanks: Nguyen Thai Ngoc Duy <pclouds@gentoo.org> - Former Gentoo developer, wrote Git features for the migration X-Thanks: Brian Harring <ferringb@gentoo.org> - wrote much python to improve cvs2svn X-Thanks: Rich Freeman <rich0@gentoo.org> - validation scripts X-Thanks: Patrick Lauer <patrick@gentoo.org> - Gentoo dev, running new 2014 work in migration X-Thanks: Michał Górny <mgorny@gentoo.org> - scripts, QA, nagging X-Thanks: All of other Gentoo developers - many ideas and lots of paint on the bikeshed