sci-biology / qrna

Prototype ncRNA genefinder

Official package sites : http://eddylab.org/software.html ·

v2.0.4 :: 0 :: gentoo

Modified
License
GPL-2
Keywords
~amd64 ~x86
USE flags
examples

v2.0.3c-r3 :: 0 :: gentoo

Modified
License
GPL-2
Keywords
~amd64 ~x86

General

examples
Install examples, usually source code

dev-lang / perl : Larry Wall's Practical Extraction and Report Language

sci-biology / hmmer : Sequence analysis using profile hidden Markov models

dev-lang / perl : Larry Wall's Practical Extraction and Report Language

sci-biology / hmmer : Sequence analysis using profile hidden Markov models

Repository mirror & CI · gentoo
Merge updates from master
Eli Schwartz · gentoo
sci-biology/qrna: add 2.0.4
This is the 2006 edition of the software. It has a bunch of useful fixes: - it fixes Modern C porting issues - it fixes LTO errors - it incorporates the glibc-2.10 patch just by upgrading! It's about time we upgrade, since it is 18 years later. Along the way we fix up the ebuild a bit: - bump to EAPI 8 - acquire an actual SRC_URI, not just the gentoo mirror - update the homepage along with the SRC_URI. The original homepage is dead, and the domain redirects to a new domain (whence comes the new distfile). It has some shortcomings too: - the distfile comes with free .svn directories, which have to be pruned. - the distfile comes without the 80mb demos To solve this, we use the old distfile (which I think only exists on Gentoo's mirror network) and gate it behind a USE=examples flag, in case anyone needs them. Closes: https://bugs.gentoo.org/862285 Closes: https://bugs.gentoo.org/884283 Signed-off-by: Eli Schwartz <eschwartz93@gmail.com> Signed-off-by: Sam James <sam@gentoo.org>
Repository mirror & CI · gentoo
Merge updates from master
David Seifert · gentoo
sci-biology/qrna: Port to EAPI 7
Closes: https://bugs.gentoo.org/710554 Package-Manager: Portage-2.3.89, Repoman-2.3.20 Signed-off-by: David Seifert <soap@gentoo.org>
Andreas Sturmlechner · gentoo
sci-biology/qrna: Drop old
Package-Manager: Portage-2.3.28, Repoman-2.3.9
Martin Mokrejš · gentoo
sci-biology/qrna: DEPEND on sci-biology/hmmer:2
Closes: https://github.com/gentoo/gentoo/pull/7134
Robin H. Johnson · gentoo
Drop $Id$ per council decision in bug #611234.
Signed-off-by: Robin H. Johnson <robbat2@gentoo.org>
David Seifert · gentoo
sci-biology/qrna: Modernise to EAPI 6
* Remove ppc from KEYWORDS Package-Manager: Portage-2.3.3, Repoman-2.3.1 Closes: https://github.com/gentoo/gentoo/pull/3856
Robin H. Johnson · gentoo
proj/gentoo: Initial commit
This commit represents a new era for Gentoo: Storing the gentoo-x86 tree in Git, as converted from CVS. This commit is the start of the NEW history. Any historical data is intended to be grafted onto this point. Creation process: 1. Take final CVS checkout snapshot 2. Remove ALL ChangeLog* files 3. Transform all Manifests to thin 4. Remove empty Manifests 5. Convert all stale $Header$/$Id$ CVS keywords to non-expanded Git $Id$ 5.1. Do not touch files with -kb/-ko keyword flags. Signed-off-by: Robin H. Johnson <robbat2@gentoo.org> X-Thanks: Alec Warner <antarus@gentoo.org> - did the GSoC 2006 migration tests X-Thanks: Robin H. Johnson <robbat2@gentoo.org> - infra guy, herding this project X-Thanks: Nguyen Thai Ngoc Duy <pclouds@gentoo.org> - Former Gentoo developer, wrote Git features for the migration X-Thanks: Brian Harring <ferringb@gentoo.org> - wrote much python to improve cvs2svn X-Thanks: Rich Freeman <rich0@gentoo.org> - validation scripts X-Thanks: Patrick Lauer <patrick@gentoo.org> - Gentoo dev, running new 2014 work in migration X-Thanks: Michał Górny <mgorny@gentoo.org> - scripts, QA, nagging X-Thanks: All of other Gentoo developers - many ideas and lots of paint on the bikeshed