sci-biology / rmblast

RepeatMasker compatible version of NCBI BLAST+

Official package sites : http://www.repeatmasker.org/RMBlast.html ·

v1.2-r1 :: 0 :: gentoo

Modified
License
OSL-2.1
Keywords
~amd64 ~x86

app-arch / cpio : A file archival tool which can also read and write tar files

dev-libs / boost : Boost Libraries for C++

dev-libs / boost : Boost Libraries for C++

sci-biology / repeatmasker : Screen DNA sequences for interspersed repeats and low complexity DNA

457972
sci-biology/rmblast bundles half of sci-biology/ncbi-tools++
515962
sci-biology/rmblast-1.2-r1 insecure RUNPATHs
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sci-biology/rmblast-1.2-r1 : /.../test_boost.cpp:60:40: fatal error: boost/.../test_observer.hpp: No such file or directory
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sci-biology/rmblast-1.2-r1 : /.../ncbistr.hpp:2826:61: error: cannot convert ncbi::AutoPtr<ncbi::IStringEncoder>::element_type*
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sci-biology/rmblast-1.2-r1 : ebuild uses colon (:) as a sed delimiter
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sci-biology/rmblast-1.2-r1 : /.../ncbi_stack_linux.cpp: fatal error: execinfo.h: No such file or directory
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sci-biology/rmblast-1.2-r1 : configure: error: Do not know how to build MT-safe with compiler /usr/bin/x86_64-pc-linux-gnu-g++ 10.
Repository mirror & CI · gentoo
Merge updates from master
Sam James · gentoo
sci-biology/rmblast: eutils->epatch
Package-Manager: Portage-3.0.14-prefix, Repoman-3.0.2 Signed-off-by: Sam James <sam@gentoo.org>
Michał Górny · gentoo
sci-biology/rmblast: [QA] Move patch to a distfile
Closes: https://bugs.gentoo.org/620616
Robin H. Johnson · gentoo
Drop $Id$ per council decision in bug #611234.
Signed-off-by: Robin H. Johnson <robbat2@gentoo.org>
Ted Tanberry · gentoo
sci-biology/rmblast: Fix bug 569622.
Package-Manager: portage-2.2.26
Robin H. Johnson · gentoo
proj/gentoo: Initial commit
This commit represents a new era for Gentoo: Storing the gentoo-x86 tree in Git, as converted from CVS. This commit is the start of the NEW history. Any historical data is intended to be grafted onto this point. Creation process: 1. Take final CVS checkout snapshot 2. Remove ALL ChangeLog* files 3. Transform all Manifests to thin 4. Remove empty Manifests 5. Convert all stale $Header$/$Id$ CVS keywords to non-expanded Git $Id$ 5.1. Do not touch files with -kb/-ko keyword flags. Signed-off-by: Robin H. Johnson <robbat2@gentoo.org> X-Thanks: Alec Warner <antarus@gentoo.org> - did the GSoC 2006 migration tests X-Thanks: Robin H. Johnson <robbat2@gentoo.org> - infra guy, herding this project X-Thanks: Nguyen Thai Ngoc Duy <pclouds@gentoo.org> - Former Gentoo developer, wrote Git features for the migration X-Thanks: Brian Harring <ferringb@gentoo.org> - wrote much python to improve cvs2svn X-Thanks: Rich Freeman <rich0@gentoo.org> - validation scripts X-Thanks: Patrick Lauer <patrick@gentoo.org> - Gentoo dev, running new 2014 work in migration X-Thanks: Michał Górny <mgorny@gentoo.org> - scripts, QA, nagging X-Thanks: All of other Gentoo developers - many ideas and lots of paint on the bikeshed