Summary
SeaView is a graphical multiple sequence alignment editor developped by Manolo Gouy. SeaView is able to read and write various alignment formats (NEXUS, MSF, CLUSTAL, FASTA, PHYLIP, MASE). It allows to manually edit the alignment, and also to run DOT-PLOT or CLUSTALW programs to locally improve the alignment.
Versions
v4.6-r1 :: 0 :: gentoo
- Modified
- License
- public-domain
- Keywords
- ~amd64 ~x86
- USE flags
- xft
USE flags
General
- xft
- Build with support for XFT font renderer (x11-libs/libXft)
Dependencies
sci-biology / clustalw : General purpose multiple alignment program for DNA and proteins
sci-biology / muscle : Multiple sequence comparison by log-expectation
sci-biology / phyml : Estimation of large phylogenies by maximum likelihood
sci-libs / libmuscle : Library for sci-biology/mauve
sys-libs / zlib : Standard (de)compression library
x11-libs / fltk : C++ user interface toolkit for X and OpenGL
Runtime Dependencies
sci-biology / clustalw : General purpose multiple alignment program for DNA and proteins
sci-biology / muscle : Multiple sequence comparison by log-expectation
sci-biology / phyml : Estimation of large phylogenies by maximum likelihood
sci-libs / libmuscle : Library for sci-biology/mauve
sys-libs / zlib : Standard (de)compression library
x11-libs / fltk : C++ user interface toolkit for X and OpenGL
Bugs
Change logs
- Repository mirror & CI · gentoo
Merge updates from master - David Seifert · gentoo
sci-biology/seaview: Remove old 4.5.4
Closes: https://bugs.gentoo.org/588506 Package-Manager: Portage-3.0.8, Repoman-3.0.2 Signed-off-by: David Seifert <soap@gentoo.org> - David Seifert · gentoo
sci-biology/seaview: Port to EAPI 7
* Fix building against GCC 10 / -fno-common * Fix building against Clang Closes: https://bugs.gentoo.org/707842 Closes: https://bugs.gentoo.org/741198 Package-Manager: Portage-3.0.8, Repoman-3.0.2 Signed-off-by: David Seifert <soap@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - Aaron Bauman · gentoo
sci-biology/seaview: drop old EAPI=5
Signed-off-by: Aaron Bauman <bman@gentoo.org> - Robin H. Johnson · gentoo
Drop $Id$ per council decision in bug #611234.
Signed-off-by: Robin H. Johnson <robbat2@gentoo.org> - David Seifert · gentoo
sci-biology/seaview: Remove ppc from KEYWORDS
Package-Manager: Portage-2.3.3, Repoman-2.3.1 Closes: https://github.com/gentoo/gentoo/pull/3856 - David Seifert · gentoo
sci-biology/seaview: version bump
* EAPI=6 Package-Manager: portage-2.3.0 - Agostino Sarubbo · gentoo
sci-biology/seaview: ppc stable wrt bug #575914
Package-Manager: portage-2.2.26 RepoMan-Options: --include-arches="ppc" Signed-off-by: Agostino Sarubbo <ago@gentoo.org> - Agostino Sarubbo · gentoo
sci-biology/seaview: x86 stable wrt bug #575914
Package-Manager: portage-2.2.26 RepoMan-Options: --include-arches="x86" Signed-off-by: Agostino Sarubbo <ago@gentoo.org> - Ian Delaney · gentoo
Merge remote-tracking branch 'remotes/sbraz/syncthing'
Pull Request: https://github.com/gentoo/gentoo/pull/990 - Agostino Sarubbo · gentoo
sci-biology/seaview: amd64 stable wrt bug #575914
Package-Manager: portage-2.2.26 RepoMan-Options: --include-arches="amd64" Signed-off-by: Agostino Sarubbo <ago@gentoo.org> - Justin Lecher · gentoo
sci-biology/seaview: Version Bump
fixes compilation problems with newer fltk Gentoo-Bug: https://bugs.gentoo.org/show_bug.cgi?id=556750 Package-Manager: portage-2.2.25 Signed-off-by: Justin Lecher <jlec@gentoo.org> - Robin H. Johnson · gentoo
proj/gentoo: Initial commit
This commit represents a new era for Gentoo: Storing the gentoo-x86 tree in Git, as converted from CVS. This commit is the start of the NEW history. Any historical data is intended to be grafted onto this point. Creation process: 1. Take final CVS checkout snapshot 2. Remove ALL ChangeLog* files 3. Transform all Manifests to thin 4. Remove empty Manifests 5. Convert all stale $Header$/$Id$ CVS keywords to non-expanded Git $Id$ 5.1. Do not touch files with -kb/-ko keyword flags. Signed-off-by: Robin H. Johnson <robbat2@gentoo.org> X-Thanks: Alec Warner <antarus@gentoo.org> - did the GSoC 2006 migration tests X-Thanks: Robin H. Johnson <robbat2@gentoo.org> - infra guy, herding this project X-Thanks: Nguyen Thai Ngoc Duy <pclouds@gentoo.org> - Former Gentoo developer, wrote Git features for the migration X-Thanks: Brian Harring <ferringb@gentoo.org> - wrote much python to improve cvs2svn X-Thanks: Rich Freeman <rich0@gentoo.org> - validation scripts X-Thanks: Patrick Lauer <patrick@gentoo.org> - Gentoo dev, running new 2014 work in migration X-Thanks: Michał Górny <mgorny@gentoo.org> - scripts, QA, nagging X-Thanks: All of other Gentoo developers - many ideas and lots of paint on the bikeshed