sci-biology / seqan

C++ Sequence Analysis Library

Official package sites : https://www.seqan.de/ ·

v3.1.0 :: 0 :: gentoo

Modified
License
BSD GPL-3
Keywords
~amd64 ~amd64-linux ~x86

v2.4.0-r1 :: 0 :: gentoo

Modified
License
BSD GPL-3
Keywords
~amd64 ~amd64-linux ~x86 ~x86-linux
USE flags
tools

General

tools
Build and install SeqAn commandline tools, such as the Yara aligner

cpu_flags_x86

sse4_1
Enable SSE4.1 instruction support
sse4_2
Enable SSE4.2 instruction support

app-arch / bzip2 : A high-quality data compressor used extensively by Gentoo Linux

dev-cpp / range-v3 : Range library for C++14/17/20, basis for C++20's std::ranges

dev-libs / cereal : Header-only C++11 serialization library

sci-libs / lemon : C++ template static library of common data structures and algorithms

sys-libs / zlib : Standard (de)compression library

app-arch / bzip2 : A high-quality data compressor used extensively by Gentoo Linux

dev-cpp / range-v3 : Range library for C++14/17/20, basis for C++20's std::ranges

dev-libs / cereal : Header-only C++11 serialization library

sci-libs / lemon : C++ template static library of common data structures and algorithms

sys-libs / zlib : Standard (de)compression library

Repository mirror & CI · gentoo
Merge updates from master
Jakov Smolić · gentoo
sci-biology/seqan: Keyword 3.1.0 x86, #834863
Signed-off-by: Jakov Smolić <jsmolic@gentoo.org>
Repository mirror & CI · gentoo
Merge updates from master
David Seifert · gentoo
sci-biology/seqan: [QA] use tc-check-openmp correctly
Signed-off-by: David Seifert <soap@gentoo.org>
Repository mirror & CI · gentoo
Merge updates from master
Andrew Ammerlaan · gentoo
sci-biology/seqan: add version 3.1.0
Closes: https://bugs.gentoo.org/774702 Package-Manager: Portage-3.0.30, Repoman-3.0.3 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
Repository mirror & CI · gentoo
Merge updates from master
Andreas Sturmlechner · gentoo
sci-biology/seqan: Drop unmaintained live ebuild
Package-Manager: Portage-3.0.16, Repoman-3.0.2 Signed-off-by: Andreas Sturmlechner <asturm@gentoo.org>
Andreas Sturmlechner · gentoo
sci-biology/seqan: Drop 2.4.0 (r0)
Package-Manager: Portage-3.0.16, Repoman-3.0.2 Signed-off-by: Andreas Sturmlechner <asturm@gentoo.org>
Andreas Sturmlechner · gentoo
sci-biology/seqan: Port to EAPI-7, cmake.eclass, https
- Fix cmake config install path - Fix pkgconfig install path - Fix examples install path - Fix build with BUILD_SHARED_LIBS=ON default Package-Manager: Portage-3.0.16, Repoman-3.0.2 Signed-off-by: Andreas Sturmlechner <asturm@gentoo.org>
Repository mirror & CI · gentoo
Merge updates from master
Michał Górny · gentoo
sci-biology/seqan: Eradicate doc (python2)
Closes: https://bugs.gentoo.org/735442 Signed-off-by: Michał Górny <mgorny@gentoo.org>
Michał Górny · gentoo
sci-biology/seqan: Remove old (drop to ~arch)
Signed-off-by: Michał Górny <mgorny@gentoo.org>
Repository mirror & CI · gentoo
Merge updates from master
Michał Górny · gentoo
*/*: [QA] Fix trivial cases of MissingTestRestrict
The result was achieved via the following pipeline: pkgcheck scan -c RestrictTestCheck -R FormatReporter \ --format '{category}/{package}/{package}-{version}.ebuild' | xargs -n32 grep -L RESTRICT | xargs -n32 sed -i -e '/^IUSE=.*test/aRESTRICT="!test? ( test )"' The resulting metadata was compared before and after the change. Few Go ebuilds had to be fixed manually due to implicit RESTRICT=strip added by the eclass. Two ebuilds have to be fixed because of multiline IUSE. Suggested-by: Robin H. Johnson <robbat2@gentoo.org> Closes: https://github.com/gentoo/gentoo/pull/13942 Signed-off-by: Michał Górny <mgorny@gentoo.org>
Andreas Sturmlechner · gentoo
sci-biology/seqan: inherit versionator
Package-Manager: Portage-2.3.38, Repoman-2.3.9
Andreas Sturmlechner · gentoo
sci-biology/seqan: inherit versionator
Package-Manager: Portage-2.3.38, Repoman-2.3.9
David Seifert · gentoo
sci-biology/seqan: Add live ebuild
Package-Manager: Portage-2.3.24, Repoman-2.3.6
David Seifert · gentoo
sci-biology/seqan: Version bump to 2.4.0
* Add USE=tools option to install command-line tools Closes: https://bugs.gentoo.org/618278 Package-Manager: Portage-2.3.24, Repoman-2.3.6
David Seifert · gentoo
sci-biology/seqan: [QA] Add missing python metadata variables
Package-Manager: Portage-2.3.5, Repoman-2.3.2
Robin H. Johnson · gentoo
Drop $Id$ per council decision in bug #611234.
Signed-off-by: Robin H. Johnson <robbat2@gentoo.org>
T. Malfatti · gentoo
media-libs/portaudio: Version bump
Agostino Sarubbo · gentoo
sci-biology/seqan: x86 stable wrt bug #525628
Package-Manager: portage-2.3.0 RepoMan-Options: --include-arches="x86" Signed-off-by: Agostino Sarubbo <ago@gentoo.org>
Aaron Bauman · gentoo
sci-biology/seqan: amd64 stable wrt bug #525628
David Seifert · gentoo
sci-biology/seqan: Add blocker for older SLOTs
Gentoo-bug: 602508 Package-Manager: portage-2.3.3
David Seifert · gentoo
sci-biology/seqan: version bump
Package-Manager: portage-2.3.0
David Seifert · gentoo
sci-biology/seqan: Remove old and broken ebuilds
Package-Manager: portage-2.2.28
David Seifert · gentoo
sci-biology/seqan: SLOT 1.4 and 2.1, allow for parallel installation
Gentoo-Bug: 566502 * EAPI=6 Package-Manager: portage-2.2.28
Sergey Popov · gentoo
sci-biology/seqan: drop SSE instruction check in pkg_pretend(), which sometimes fails on correct situations, add -msse4.1 unconditionally
Package-Manager: portage-2.2.20
Sergey Popov · gentoo
sci-biology/seqan: correct dependency on sci-biology/samtools
Seqan 1.3.1 does not compile with samtools greater than 0.1.19 Also it does not compile with GCC 4.9 or higher, so restrict this too Gentoo-Bug: 514250 Package-Manager: portage-2.2.20
Robin H. Johnson · gentoo
proj/gentoo: Initial commit
This commit represents a new era for Gentoo: Storing the gentoo-x86 tree in Git, as converted from CVS. This commit is the start of the NEW history. Any historical data is intended to be grafted onto this point. Creation process: 1. Take final CVS checkout snapshot 2. Remove ALL ChangeLog* files 3. Transform all Manifests to thin 4. Remove empty Manifests 5. Convert all stale $Header$/$Id$ CVS keywords to non-expanded Git $Id$ 5.1. Do not touch files with -kb/-ko keyword flags. Signed-off-by: Robin H. Johnson <robbat2@gentoo.org> X-Thanks: Alec Warner <antarus@gentoo.org> - did the GSoC 2006 migration tests X-Thanks: Robin H. Johnson <robbat2@gentoo.org> - infra guy, herding this project X-Thanks: Nguyen Thai Ngoc Duy <pclouds@gentoo.org> - Former Gentoo developer, wrote Git features for the migration X-Thanks: Brian Harring <ferringb@gentoo.org> - wrote much python to improve cvs2svn X-Thanks: Rich Freeman <rich0@gentoo.org> - validation scripts X-Thanks: Patrick Lauer <patrick@gentoo.org> - Gentoo dev, running new 2014 work in migration X-Thanks: Michał Górny <mgorny@gentoo.org> - scripts, QA, nagging X-Thanks: All of other Gentoo developers - many ideas and lots of paint on the bikeshed