sci-biology / seqan

C++ Sequence Analysis Library

Official package sites : http://www.seqan.de/ ·

v9999 :: 0 :: gentoo

Modified
License
BSD GPL-3
USE flags
doc tools

v2.4.0 :: 0 :: gentoo

Modified
License
BSD GPL-3
Keywords
~amd64 ~amd64-linux ~x86 ~x86-linux
USE flags
doc tools

v2.2.0-r1 :: 0 :: gentoo

Modified
License
BSD GPL-3
Keywords
~amd64 ~amd64-linux ~x86 ~x86-linux
USE flags
doc test

v1.4.2-r1 :: 1.4 :: gentoo

Modified
License
BSD GPL-3
Keywords
amd64 x86 ~amd64-linux ~x86-linux
USE flags
test

General

doc
Add extra documentation (API, Javadoc, etc). It is recommended to enable per package instead of globally
test
Enable dependencies and/or preparations necessary to run tests (usually controlled by FEATURES=test but can be toggled independently)
tools
Build and install SeqAn commandline tools, such as the Yara aligner

cpu_flags_x86

sse4_1
Enable SSE4.1 instruction support

app-arch / bzip2 : A high-quality data compressor used extensively by Gentoo Linux

dev-lang / python : An interpreted, interactive, object-oriented programming language

dev-python / nose : Unittest extension with automatic test suite discovery and easy test authoring

dev-python / sphinx : Python documentation generator

dev-util / cmake : Cross platform Make

dev-util / ninja : A small build system similar to make

dev-vcs / git : stupid content tracker: distributed VCS designed for speed and efficiency

sys-devel / make : Standard tool to compile source trees

sys-libs / zlib : Standard (de)compression library

app-arch / bzip2 : A high-quality data compressor used extensively by Gentoo Linux

sys-libs / zlib : Standard (de)compression library

sci-biology / bowtie : Popular short read aligner for Next-generation sequencing data

sci-biology / tophat : Python-based splice junction mapper for RNA-Seq reads using bowtie2

659194
sci-biology/seqan-1.4.2-r1 : [QA] One or more CMake variables were not used by the project:
Andreas Sturmlechner · gentoo
sci-biology/seqan: inherit versionator
Package-Manager: Portage-2.3.38, Repoman-2.3.9
Andreas Sturmlechner · gentoo
sci-biology/seqan: inherit versionator
Package-Manager: Portage-2.3.38, Repoman-2.3.9
David Seifert · gentoo
sci-biology/seqan: Add live ebuild
Package-Manager: Portage-2.3.24, Repoman-2.3.6
David Seifert · gentoo
sci-biology/seqan: Version bump to 2.4.0
* Add USE=tools option to install command-line tools Closes: https://bugs.gentoo.org/618278 Package-Manager: Portage-2.3.24, Repoman-2.3.6
David Seifert · gentoo
sci-biology/seqan: [QA] Add missing python metadata variables
Package-Manager: Portage-2.3.5, Repoman-2.3.2
Robin H. Johnson · gentoo
Drop $Id$ per council decision in bug #611234.
Signed-off-by: Robin H. Johnson <robbat2@gentoo.org>
T. Malfatti · gentoo
media-libs/portaudio: Version bump
Agostino Sarubbo · gentoo
sci-biology/seqan: x86 stable wrt bug #525628
Package-Manager: portage-2.3.0 RepoMan-Options: --include-arches="x86" Signed-off-by: Agostino Sarubbo <ago@gentoo.org>
Aaron Bauman · gentoo
sci-biology/seqan: amd64 stable wrt bug #525628
David Seifert · gentoo
sci-biology/seqan: Add blocker for older SLOTs
Gentoo-bug: 602508 Package-Manager: portage-2.3.3
David Seifert · gentoo
sci-biology/seqan: version bump
Package-Manager: portage-2.3.0
David Seifert · gentoo
sci-biology/seqan: Remove old and broken ebuilds
Package-Manager: portage-2.2.28
David Seifert · gentoo
sci-biology/seqan: SLOT 1.4 and 2.1, allow for parallel installation
Gentoo-Bug: 566502 * EAPI=6 Package-Manager: portage-2.2.28
Sergey Popov · gentoo
sci-biology/seqan: drop SSE instruction check in pkg_pretend(), which sometimes fails on correct situations, add -msse4.1 unconditionally
Package-Manager: portage-2.2.20
Sergey Popov · gentoo
sci-biology/seqan: correct dependency on sci-biology/samtools
Seqan 1.3.1 does not compile with samtools greater than 0.1.19 Also it does not compile with GCC 4.9 or higher, so restrict this too Gentoo-Bug: 514250 Package-Manager: portage-2.2.20
Robin H. Johnson · gentoo
proj/gentoo: Initial commit
This commit represents a new era for Gentoo: Storing the gentoo-x86 tree in Git, as converted from CVS. This commit is the start of the NEW history. Any historical data is intended to be grafted onto this point. Creation process: 1. Take final CVS checkout snapshot 2. Remove ALL ChangeLog* files 3. Transform all Manifests to thin 4. Remove empty Manifests 5. Convert all stale $Header$/$Id$ CVS keywords to non-expanded Git $Id$ 5.1. Do not touch files with -kb/-ko keyword flags. Signed-off-by: Robin H. Johnson <robbat2@gentoo.org> X-Thanks: Alec Warner <antarus@gentoo.org> - did the GSoC 2006 migration tests X-Thanks: Robin H. Johnson <robbat2@gentoo.org> - infra guy, herding this project X-Thanks: Nguyen Thai Ngoc Duy <pclouds@gentoo.org> - Former Gentoo developer, wrote Git features for the migration X-Thanks: Brian Harring <ferringb@gentoo.org> - wrote much python to improve cvs2svn X-Thanks: Rich Freeman <rich0@gentoo.org> - validation scripts X-Thanks: Patrick Lauer <patrick@gentoo.org> - Gentoo dev, running new 2014 work in migration X-Thanks: Michał Górny <mgorny@gentoo.org> - scripts, QA, nagging X-Thanks: All of other Gentoo developers - many ideas and lots of paint on the bikeshed