{"bugs":[{"bugid":894622,"firstseen":"2023-02-15T18:54:45.299881","severity":"normal","status":"CONFIRMED","summary":"sci-biology\/seqan-3.1.0: The SDSL library is required, but wasn't found"},{"bugid":940694,"firstseen":"2024-10-03T10:02:24.231764","severity":"normal","status":"CONFIRMED","summary":"sci-biology\/seqan-3.1.0 - [libtool] [gcc-15] -- Configuring incomplete, errors occurred!"}],"categories":[{"categoryid":449,"name":"app-arch","summary":"The app-arch category contains tools for archiving, compressing and uncompressing files or groups of files."},{"categoryid":429,"name":"dev-cpp","summary":"The dev-cpp category contains libraries and utilities relevant to the c++ programming language."},{"categoryid":393,"name":"dev-libs","summary":"The dev-libs category contains various miscellaneous programming libraries."},{"categoryid":353,"name":"sci-biology","summary":"The sci-biology category contains software that can be used in biological and related scientific environments."},{"categoryid":318,"name":"sci-libs","summary":"The sci-libs category contains various science-related libraries."},{"categoryid":381,"name":"sys-libs","summary":"The sys-libs category contains various system-level libraries."}],"changelog":[{"authoremail":"repomirrorci@gentoo.org","authorname":"Repository mirror & CI","commitid":"2dc68489aaf363ddca284e479a70fedb91d644e7","committime":"2022-12-19T15:02:03","packageid":60538,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"asturm@gentoo.org","authorname":"Andreas Sturmlechner","body":"Signed-off-by: Andreas Sturmlechner ","commitid":"949a896e4942213cd4cb80667746e31590b21e03","committime":"2022-12-18T12:29:55","packageid":60538,"repoid":1,"summary":"sci-biology\/seqan: drop 2.4.0-r1"},{"authoremail":"repomirrorci@gentoo.org","authorname":"Repository mirror & CI","commitid":"006027088446293dc4e3f3b4ddffa8c07ce8765d","committime":"2022-06-01T12:22:43","packageid":60538,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"jsmolic@gentoo.org","authorname":"Jakov Smolić","body":"Signed-off-by: Jakov Smolić ","commitid":"865e84b9099e01f7fd92ac1b8b30a948a06e8bc9","committime":"2022-06-01T12:03:51","packageid":60538,"repoid":1,"summary":"sci-biology\/seqan: Keyword 3.1.0 x86, #834863"},{"authoremail":"repomirrorci@gentoo.org","authorname":"Repository mirror & CI","commitid":"65775d41a86668f3af4f28f4f2890d460cc93f1c","committime":"2022-05-16T08:18:00","packageid":60538,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"soap@gentoo.org","authorname":"David Seifert","body":"Signed-off-by: David Seifert ","commitid":"70d003c62bd0ba9a96609f2522a6854d99ba4148","committime":"2022-05-16T08:12:13","packageid":60538,"repoid":1,"summary":"sci-biology\/seqan: [QA] use tc-check-openmp correctly"},{"authoremail":"repomirrorci@gentoo.org","authorname":"Repository mirror & CI","commitid":"4de959426e6023ecc529c6465657f8000739205e","committime":"2022-02-24T16:07:10","packageid":60538,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"andrewammerlaan@gentoo.org","authorname":"Andrew Ammerlaan","body":"Closes: https:\/\/bugs.gentoo.org\/774702\nPackage-Manager: Portage-3.0.30, Repoman-3.0.3\nSigned-off-by: Andrew Ammerlaan ","commitid":"8ae0a404819aea5af6bc920231434c3523fb8281","committime":"2022-02-24T15:48:06","packageid":60538,"repoid":1,"summary":"sci-biology\/seqan: add version 3.1.0"},{"authoremail":"repomirrorci@gentoo.org","authorname":"Repository mirror & CI","commitid":"cc30be1f0a0f9cbf0aeeeb8652bb3dd2d5a493a2","committime":"2021-03-07T19:05:47","packageid":60538,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"asturm@gentoo.org","authorname":"Andreas Sturmlechner","body":"Package-Manager: Portage-3.0.16, Repoman-3.0.2\nSigned-off-by: Andreas Sturmlechner ","commitid":"eba558dccec830283c42e6250e25e7cedcbf4432","committime":"2021-03-07T18:51:15","packageid":60538,"repoid":1,"summary":"sci-biology\/seqan: Drop unmaintained live ebuild"},{"authoremail":"asturm@gentoo.org","authorname":"Andreas Sturmlechner","body":"Package-Manager: Portage-3.0.16, Repoman-3.0.2\nSigned-off-by: Andreas Sturmlechner ","commitid":"b9213e262c897736fc78b3184c6d846c7fd9ae7d","committime":"2021-03-07T18:47:40","packageid":60538,"repoid":1,"summary":"sci-biology\/seqan: Drop 2.4.0 (r0)"},{"authoremail":"asturm@gentoo.org","authorname":"Andreas Sturmlechner","body":"- Fix cmake config install path\n- Fix pkgconfig install path\n- Fix examples install path\n- Fix build with BUILD_SHARED_LIBS=ON default\n\nPackage-Manager: Portage-3.0.16, Repoman-3.0.2\nSigned-off-by: Andreas Sturmlechner ","commitid":"e7bef38a50bcb75a40e9738e75bdfc37a9ded969","committime":"2021-03-07T16:31:44","packageid":60538,"repoid":1,"summary":"sci-biology\/seqan: Port to EAPI-7, cmake.eclass, https"},{"authoremail":"repomirrorci@gentoo.org","authorname":"Repository mirror & CI","commitid":"3d3e4684f177c123765283df6ea708c75d6d8937","committime":"2020-09-09T11:05:24","packageid":60538,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"mgorny@gentoo.org","authorname":"Michał Górny","body":"Closes: https:\/\/bugs.gentoo.org\/735442\nSigned-off-by: Michał Górny ","commitid":"2236a5f7ab3440ef27da0f5adc86a93ea557b63a","committime":"2020-09-09T10:29:59","packageid":60538,"repoid":1,"summary":"sci-biology\/seqan: Eradicate doc (python2)"},{"authoremail":"mgorny@gentoo.org","authorname":"Michał Górny","body":"Signed-off-by: Michał Górny ","commitid":"3e408d3f2978b724a7e8b870a6f20100e9a3d7f2","committime":"2020-09-09T10:24:35","packageid":60538,"repoid":1,"summary":"sci-biology\/seqan: Remove old (drop to ~arch)"},{"authoremail":"repomirrorci@gentoo.org","authorname":"Repository mirror & CI","commitid":"fef742528aacdd4ffa4e59ea0354106ca161650e","committime":"2019-12-10T23:48:11","packageid":60538,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"mgorny@gentoo.org","authorname":"Michał Górny","body":"The result was achieved via the following pipeline:\n\n pkgcheck scan -c RestrictTestCheck -R FormatReporter \\\n --format '{category}\/{package}\/{package}-{version}.ebuild' |\n xargs -n32 grep -L RESTRICT |\n xargs -n32 sed -i -e '\/^IUSE=.*test\/aRESTRICT=\"!test? ( test )\"'\n\nThe resulting metadata was compared before and after the change.\nFew Go ebuilds had to be fixed manually due to implicit RESTRICT=strip\nadded by the eclass. Two ebuilds have to be fixed because of multiline\nIUSE.\n\nSuggested-by: Robin H. Johnson \nCloses: https:\/\/github.com\/gentoo\/gentoo\/pull\/13942\nSigned-off-by: Michał Górny ","commitid":"064af661d0c9a31cecdf348632bc5603333a9149","committime":"2019-12-10T22:02:54","packageid":60538,"repoid":1,"summary":"*\/*: [QA] Fix trivial cases of MissingTestRestrict"},{"authoremail":"repo-qa-checks@gentoo.org","authorname":"Repository QA checks","commitid":"cee36d9b7ecba719580e05bb733cd7b8c962102d","committime":"2018-05-18T23:06:13","packageid":60538,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"asturm@gentoo.org","authorname":"Andreas Sturmlechner","body":"Package-Manager: Portage-2.3.38, Repoman-2.3.9","commitid":"fa6632773009f7c76041c9db3aa608d7f0bdcb4a","committime":"2018-05-18T22:26:53","packageid":60538,"repoid":1,"summary":"sci-biology\/seqan: inherit versionator"},{"authoremail":"repo-qa-checks@gentoo.org","authorname":"Repository QA checks","commitid":"3de3e33a78e9aed6e200767c7e944ed2da65fe25","committime":"2018-05-18T22:03:18","packageid":60538,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"asturm@gentoo.org","authorname":"Andreas Sturmlechner","body":"Package-Manager: Portage-2.3.38, Repoman-2.3.9","commitid":"178d628ab66b25fc08078bde0d49fe3e8f9f8fc6","committime":"2018-05-18T21:15:33","packageid":60538,"repoid":1,"summary":"sci-biology\/seqan: inherit versionator"},{"authoremail":"repo-qa-checks@gentoo.org","authorname":"Repository QA checks","commitid":"d748f3e6e3e4008ab389924d9abad739ee1967db","committime":"2018-02-11T13:06:17","packageid":60538,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"soap@gentoo.org","authorname":"David Seifert","body":"Package-Manager: Portage-2.3.24, Repoman-2.3.6","commitid":"a1b3056e6cae31c803fd4cd3a77adbd5a9cd4937","committime":"2018-02-11T12:20:51","packageid":60538,"repoid":1,"summary":"sci-biology\/seqan: Add live ebuild"},{"authoremail":"soap@gentoo.org","authorname":"David Seifert","body":"* Add USE=tools option to install command-line tools\n\nCloses: https:\/\/bugs.gentoo.org\/618278\nPackage-Manager: Portage-2.3.24, Repoman-2.3.6","commitid":"3155495650f555369e58b58f54fc6766e9691f20","committime":"2018-02-11T12:20:48","packageid":60538,"repoid":1,"summary":"sci-biology\/seqan: Version bump to 2.4.0"},{"authoremail":"repo-qa-checks@gentoo.org","authorname":"Repository QA checks","commitid":"221fd86adb4df2ca5ca562929f4bed1b848fba55","committime":"2017-04-20T17:02:07","packageid":60538,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"soap@gentoo.org","authorname":"David Seifert","body":"Package-Manager: Portage-2.3.5, Repoman-2.3.2","commitid":"bf671c6314a8faa990c51d5593d3b4d2d61ed31e","committime":"2017-04-20T14:47:13","packageid":60538,"repoid":1,"summary":"sci-biology\/seqan: [QA] Add missing python metadata variables"},{"authoremail":"repo-qa-checks@gentoo.org","authorname":"Repository QA checks","commitid":"25093d6359f778b8d1052f66ba9e26fc29ded21a","committime":"2017-02-28T20:35:29","packageid":60538,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"robbat2@gentoo.org","authorname":"Robin H. Johnson","body":"Signed-off-by: Robin H. Johnson ","commitid":"61b861acd7b49083dab687e133f30f3331cb7480","committime":"2017-02-28T19:47:27","packageid":60538,"repoid":1,"summary":"Drop $Id$ per council decision in bug #611234."},{"authoremail":"malfatti@neuro.ufrn.br","authorname":"T. Malfatti","commitid":"8457ba6f9fd6f0dbafcca1fb375788eeea02aae1","committime":"2017-01-26T18:44:34","packageid":60538,"repoid":1,"summary":"media-libs\/portaudio: Version bump"},{"authoremail":"repo-qa-checks@gentoo.org","authorname":"Repository QA checks","commitid":"e981d79f3217f21edd0b00df54a843e64ebcf119","committime":"2016-12-29T11:02:12","packageid":60538,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"ago@gentoo.org","authorname":"Agostino Sarubbo","body":"Package-Manager: portage-2.3.0\nRepoMan-Options: --include-arches=\"x86\"\nSigned-off-by: Agostino Sarubbo ","commitid":"4f115c5b19fe6c1e8bc018e50617e2b47bccdffa","committime":"2016-12-29T10:38:20","packageid":60538,"repoid":1,"summary":"sci-biology\/seqan: x86 stable wrt bug #525628"},{"authoremail":"repo-qa-checks@gentoo.org","authorname":"Repository QA checks","commitid":"b4b2a6fc3fffe550119c154293dc2b1f5c4e92d2","committime":"2016-12-26T13:42:20","packageid":60538,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"bman@gentoo.org","authorname":"Aaron Bauman","commitid":"cb197f2a398adf85a3fff67a741de2f9384e9656","committime":"2016-12-26T13:12:26","packageid":60538,"repoid":1,"summary":"sci-biology\/seqan: amd64 stable wrt bug #525628"},{"authoremail":"repo-qa-checks@gentoo.org","authorname":"Repository QA checks","commitid":"7e3447da18e812da0fb143f901a71c43e91da0f6","committime":"2016-12-14T20:41:49","packageid":60538,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"soap@gentoo.org","authorname":"David Seifert","body":"Gentoo-bug: 602508\n\nPackage-Manager: portage-2.3.3","commitid":"da90f594219f91865c4310e86f154dbc7dd8d3cd","committime":"2016-12-14T20:28:14","packageid":60538,"repoid":1,"summary":"sci-biology\/seqan: Add blocker for older SLOTs"},{"authoremail":"repo-qa-checks@gentoo.org","authorname":"Repository QA checks","commitid":"f1e373928b1919accb4bde4f03f5f5cf4151a4f6","committime":"2016-07-30T10:22:03","packageid":60538,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"soap@gentoo.org","authorname":"David Seifert","body":"Package-Manager: portage-2.3.0","commitid":"633977dde15ac4778ad467b010ae27c8a2f5611a","committime":"2016-07-30T10:06:46","packageid":60538,"repoid":1,"summary":"sci-biology\/seqan: version bump"},{"authoremail":"repo-qa-checks@gentoo.org","authorname":"Repository QA checks","commitid":"e67ae1c313e3cda88357396590b166101c8801cb","committime":"2016-04-09T19:02:25","packageid":60538,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"soap@gentoo.org","authorname":"David Seifert","body":"Package-Manager: portage-2.2.28","commitid":"bc0e06623a12a5686bc1fd87f95ab8d3344eab78","committime":"2016-04-09T18:56:34","packageid":60538,"repoid":1,"summary":"sci-biology\/seqan: Remove old and broken ebuilds"},{"authoremail":"soap@gentoo.org","authorname":"David Seifert","body":"Gentoo-Bug: 566502\n* EAPI=6\n\nPackage-Manager: portage-2.2.28","commitid":"6cd6d4f4e02a28fd020929485c88caaebc6b84c5","committime":"2016-04-09T18:23:54","packageid":60538,"repoid":1,"summary":"sci-biology\/seqan: SLOT 1.4 and 2.1, allow for parallel installation"},{"authoremail":"repo-qa-checks@gentoo.org","authorname":"Repository QA checks","commitid":"aef3dbdca607e645959fdadd12c93612b15b1cf6","committime":"2015-10-19T21:03:47","packageid":60538,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"pinkbyte@gentoo.org","authorname":"Sergey Popov","body":"Package-Manager: portage-2.2.20","commitid":"c72d47c69f192bd9877544f84c0de48e63f99ed5","committime":"2015-10-19T20:42:53","packageid":60538,"repoid":1,"summary":"sci-biology\/seqan: drop SSE instruction check in pkg_pretend(), which sometimes fails on correct situations, add -msse4.1 unconditionally"},{"authoremail":"repo-qa-checks@gentoo.org","authorname":"Repository QA checks","commitid":"2a0e55a20129b0dce16ea92f1792fe9da4f55613","committime":"2015-10-19T17:22:00","packageid":60538,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"pinkbyte@gentoo.org","authorname":"Sergey Popov","body":"Seqan 1.3.1 does not compile with samtools greater than 0.1.19\nAlso it does not compile with GCC 4.9 or higher, so restrict this too\n\nGentoo-Bug: 514250\n\nPackage-Manager: portage-2.2.20","commitid":"c337e46391e9fbbc1e639f860cd7b3eb72bdb536","committime":"2015-10-19T17:11:00","packageid":60538,"repoid":1,"summary":"sci-biology\/seqan: correct dependency on sci-biology\/samtools"},{"authoremail":"repo-qa-checks@gentoo.org","authorname":"Repository QA checks","commitid":"945f0d2a26da4f944fd06ad6a874f69d37ce1e06","committime":"2015-08-09T09:26:46","packageid":60538,"repoid":1,"summary":"2015-08-09 09:26:21 UTC"},{"authoremail":"robbat2@gentoo.org","authorname":"Robin H. Johnson","body":"This commit represents a new era for Gentoo:\nStoring the gentoo-x86 tree in Git, as converted from CVS.\n\nThis commit is the start of the NEW history.\nAny historical data is intended to be grafted onto this point.\n\nCreation process:\n1. Take final CVS checkout snapshot\n2. Remove ALL ChangeLog* files\n3. Transform all Manifests to thin\n4. Remove empty Manifests\n5. Convert all stale $Header$\/$Id$ CVS keywords to non-expanded Git $Id$\n5.1. Do not touch files with -kb\/-ko keyword flags.\n\nSigned-off-by: Robin H. Johnson \nX-Thanks: Alec Warner - did the GSoC 2006 migration tests\nX-Thanks: Robin H. Johnson - infra guy, herding this project\nX-Thanks: Nguyen Thai Ngoc Duy - Former Gentoo developer, wrote Git features for the migration\nX-Thanks: Brian Harring - wrote much python to improve cvs2svn\nX-Thanks: Rich Freeman - validation scripts\nX-Thanks: Patrick Lauer - Gentoo dev, running new 2014 work in migration\nX-Thanks: Michał Górny - scripts, QA, nagging\nX-Thanks: All of other Gentoo developers - many ideas and lots of paint on the bikeshed","commitid":"56bd759df1d0c750a065b8c845e93d5dfa6b549d","committime":"2015-08-08T20:49:04","packageid":60538,"repoid":1,"summary":"proj\/gentoo: Initial commit"},{"authoremail":"repo-qa-checks@gentoo.org","authorname":"Repository QA checks","commitid":"a637bd65b7fef8e2be4e7fc6e9097479372e0e2e","committime":"2015-06-19T16:38:33","packageid":60538,"repoid":1,"summary":"2015-06-19 16:35:30 UTC"}],"dependencies":[{"block":false,"categoryid":449,"description":"A high-quality data compressor used extensively by Gentoo Linux","ebuildids":[741441],"firstseen":"2010-05-04T00:54:45.661860","maintainer":"base-system@gentoo.org","maintainername":"Gentoo Base System","name":"bzip2","packageid":47649},{"block":false,"categoryid":381,"description":"Standard (de)compression library","ebuildids":[741441],"firstseen":"2010-05-04T00:54:45.661860","maintainer":"base-system@gentoo.org","maintainername":"Gentoo Base System","name":"zlib","packageid":55408},{"block":false,"categoryid":318,"description":"C++ template static library of common data structures and algorithms","ebuildids":[741441],"firstseen":"2014-01-14T14:46:49.842361","maintainer":"mmokrejs@gmail.com","maintainername":"Martin Mokrejs","name":"lemon","packageid":61807,"summary":"LEMON stands for Library for Efficient Modeling and Optimization in Networks. 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Unlike other range-like solutions which seek to do away with iterators, in range-v3 ranges are an abstration layer on top of iterators."}],"depending":[],"ebuilds":[{"archs":["~amd64","~amd64-linux","~x86"],"ebuildid":741441,"firstseen":"2022-02-28T18:31:39.467293","license":"BSD GPL-3","moddate":"2025-01-28T07:55:44","packageid":60538,"repoid":1,"slot":"0","uses":["cpu_flags_x86_sse4_2"],"version":"3.1.0"}],"masks":[],"package":{"categoryid":353,"description":"C++ Sequence Analysis Library","firstseen":"2013-03-14T14:36:03.414471","maintainer":"sci-biology@gentoo.org","maintainername":"Gentoo Biology Project","name":"seqan","packageid":60538},"rdependencies":[{"block":false,"categoryid":449,"description":"A high-quality data compressor used extensively by Gentoo Linux","ebuildids":[741441],"firstseen":"2010-05-04T00:54:45.661860","maintainer":"base-system@gentoo.org","maintainername":"Gentoo Base System","name":"bzip2","packageid":47649},{"block":false,"categoryid":381,"description":"Standard (de)compression library","ebuildids":[741441],"firstseen":"2010-05-04T00:54:45.661860","maintainer":"base-system@gentoo.org","maintainername":"Gentoo Base System","name":"zlib","packageid":55408},{"block":false,"categoryid":318,"description":"C++ template static library of common data structures and algorithms","ebuildids":[741441],"firstseen":"2014-01-14T14:46:49.842361","maintainer":"mmokrejs@gmail.com","maintainername":"Martin Mokrejs","name":"lemon","packageid":61807,"summary":"LEMON stands for Library for Efficient Modeling and Optimization in Networks. 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Unlike other range-like solutions which seek to do away with iterators, in range-v3 ranges are an abstration layer on top of iterators."}],"repos":[{"branch":"master","lastcommit":"80d925425254fefe2aa63b033753274b410beb57","name":"gentoo","path":"\/usr\/portage","repoid":1,"upstream":"origin"}],"tracked":false,"urls":["https:\/\/www.seqan.de\/"],"uses":[{"description":"Enable SSE4.2 instruction support","group":"cpu_flags_x86","isdefault":false,"use":"sse4_2"}]}