sci-biology / t-coffee

A multiple sequence alignment package

Official package sites : http://www.tcoffee.org/Projects_home_page/t_coffee_home_page.html ·

T-Coffee is a multiple sequence alignment package. Given a set of sequences (Proteins or DNA), T-Coffee generates a multiple sequence alignment. Version 2.00 and higher can mix sequences and structures. T-Coffee allows the combination of a collection of multiple/pairwise, global or local alignments into a single model. It also allows to estimate the level of consistency of each position within the new alignment with the rest of the alignments.

v11.00-r2 :: 0 :: gentoo

Modified
License
GPL-2
Keywords
~amd64 ~amd64-linux ~ppc ~ppc64 ~x86 ~x86-linux

sci-biology / clustalw : General purpose multiple alignment program for DNA and proteins

sci-chemistry / tm-align : Quick & Accurate Structural Alignment

sci-chemistry / theseus : Maximum likelihood superpositioning and analysis of macromolecular structures

David Seifert · gentoo
sci-biology/t-coffee: Remove old
Package-Manager: Portage-2.3.19, Repoman-2.3.6
David Seifert · gentoo
sci-biology/t-coffee: Fix building with GCC 7
Closes: https://bugs.gentoo.org/639832 Package-Manager: Portage-2.3.19, Repoman-2.3.6
Robin H. Johnson · gentoo
Drop $Id$ per council decision in bug #611234.
Signed-off-by: Robin H. Johnson <robbat2@gentoo.org>
Justin Lecher · gentoo
sci-biology/t-coffee: Import fix for CVE-2015-8621
Gentoo-Bug: https://bugs.gentoo.org/show_bug.cgi?id=569650 Package-Manager: portage-2.2.26 Signed-off-by: Justin Lecher <jlec@gentoo.org>
Robin H. Johnson · gentoo
proj/gentoo: Initial commit
This commit represents a new era for Gentoo: Storing the gentoo-x86 tree in Git, as converted from CVS. This commit is the start of the NEW history. Any historical data is intended to be grafted onto this point. Creation process: 1. Take final CVS checkout snapshot 2. Remove ALL ChangeLog* files 3. Transform all Manifests to thin 4. Remove empty Manifests 5. Convert all stale $Header$/$Id$ CVS keywords to non-expanded Git $Id$ 5.1. Do not touch files with -kb/-ko keyword flags. Signed-off-by: Robin H. Johnson <robbat2@gentoo.org> X-Thanks: Alec Warner <antarus@gentoo.org> - did the GSoC 2006 migration tests X-Thanks: Robin H. Johnson <robbat2@gentoo.org> - infra guy, herding this project X-Thanks: Nguyen Thai Ngoc Duy <pclouds@gentoo.org> - Former Gentoo developer, wrote Git features for the migration X-Thanks: Brian Harring <ferringb@gentoo.org> - wrote much python to improve cvs2svn X-Thanks: Rich Freeman <rich0@gentoo.org> - validation scripts X-Thanks: Patrick Lauer <patrick@gentoo.org> - Gentoo dev, running new 2014 work in migration X-Thanks: Michał Górny <mgorny@gentoo.org> - scripts, QA, nagging X-Thanks: All of other Gentoo developers - many ideas and lots of paint on the bikeshed