sci-biology / transfac

A database of eucaryotic transcription factors

Official package sites : ·

TRANSFAC® is a database of eukaryotic transcription factors, of their genomic binding sites and DNA-binding profiles. TRANSFAC 3.2 is an old public version available at the European Bioinformatics Institute. TRANSFAC® is currently maintained by the BIOBASE company. Altough they offer public access to a more recent version of the database, they offer no free downloadable version.

v3.2-r1 :: 3 :: gentoo

~amd64 ~amd64-linux ~x86 ~x86-linux
USE flags
emboss minimal


Add support for the European Molecular Biology Open Software Suite
Install a very minimal build (disables, for example, plugins, fonts, most drivers, non-critical features)

sci-biology / emboss : The European Molecular Biology Open Software Suite - A sequence analysis package

sci-biology / emboss : The European Molecular Biology Open Software Suite - A sequence analysis package

sci-biology/transfac-3.2 fails to install because of Segmentation fault during indexing
sci-biology/transfac-3.2 : * ERROR: sci-biology/transfac-3.2::gentoo failed (compile phase):
sci-biology/transfac-3.2-r1 - /.../environment:line <snip>: <snip> Segmentation fault EMBOSS_DATA=. tfextract -auto -infile class.
Robin H. Johnson · gentoo
Drop $Id$ per council decision in bug #611234.
Signed-off-by: Robin H. Johnson <>
David Seifert · gentoo
sci-biology/transfac: Modernise to EAPI 6
Package-Manager: Portage-2.3.3, Repoman-2.3.1
David Seifert · gentoo
sci-biology/transfac: Drop to unstable
Package-Manager: Portage-2.3.3, Repoman-2.3.1 Closes:
David Seifert · gentoo
sci-biology/transfac: Remove ppc from KEYWORDS
Package-Manager: Portage-2.3.3, Repoman-2.3.1 Closes:
Robin H. Johnson · gentoo
proj/gentoo: Initial commit
This commit represents a new era for Gentoo: Storing the gentoo-x86 tree in Git, as converted from CVS. This commit is the start of the NEW history. Any historical data is intended to be grafted onto this point. Creation process: 1. Take final CVS checkout snapshot 2. Remove ALL ChangeLog* files 3. Transform all Manifests to thin 4. Remove empty Manifests 5. Convert all stale $Header$/$Id$ CVS keywords to non-expanded Git $Id$ 5.1. Do not touch files with -kb/-ko keyword flags. Signed-off-by: Robin H. Johnson <> X-Thanks: Alec Warner <> - did the GSoC 2006 migration tests X-Thanks: Robin H. Johnson <> - infra guy, herding this project X-Thanks: Nguyen Thai Ngoc Duy <> - Former Gentoo developer, wrote Git features for the migration X-Thanks: Brian Harring <> - wrote much python to improve cvs2svn X-Thanks: Rich Freeman <> - validation scripts X-Thanks: Patrick Lauer <> - Gentoo dev, running new 2014 work in migration X-Thanks: Michał Górny <> - scripts, QA, nagging X-Thanks: All of other Gentoo developers - many ideas and lots of paint on the bikeshed