Summary
tRNAscan-SE detects ~99% of eukaryotic nuclear or prokaryotic tRNA genes, with a false positive rate of less than one per 15 gigabases, and with a search speed of about 30 kb/second. It was implemented for large-scale human genome sequence analysis, but is applicable to other DNAs as well.
Versions
v1.31-r3 :: 0 :: gentoo
- Modified
- License
- GPL-2
- Keywords
- ~amd64 ~x86
Runtime Dependencies
dev-lang / perl : Larry Wall's Practical Extraction and Report Language
Change logs
- Repository mirror & CI · gentoo
Merge updates from master - Ionen Wolkens · gentoo
sci-biology/trnascan-se: fix build w/ clang16, pass -std=gnu89
Closes: https://bugs.gentoo.org/874477 Signed-off-by: Ionen Wolkens <ionen@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - David Seifert · gentoo
sci-biology/trnascan-se: drop 1.31
Signed-off-by: David Seifert <soap@gentoo.org> - David Seifert · gentoo
sci-biology/trnascan-se: improve makefile
Signed-off-by: David Seifert <soap@gentoo.org> - Repository mirror & CI · gentoo
Merge updates from master - Sam James · gentoo
sci-biology/trnascan-se: update EAPI 6 -> 8
Closes: https://bugs.gentoo.org/710970 Signed-off-by: Sam James <sam@gentoo.org> - Justin Lecher · gentoo
sci-biology/trnascan-se: Drop old
Package-Manager: Portage-2.3.5, Repoman-2.3.2 Signed-off-by: Justin Lecher <jlec@gentoo.org> - Agostino Sarubbo · gentoo
sci-biology/trnascan-se: x86 stable wrt bug #615564
Package-Manager: Portage-2.3.3, Repoman-2.3.1 RepoMan-Options: --include-arches="x86" Signed-off-by: Agostino Sarubbo <ago@gentoo.org> - Agostino Sarubbo · gentoo
sci-biology/trnascan-se: amd64 stable wrt bug #615564
Package-Manager: Portage-2.3.3, Repoman-2.3.1 RepoMan-Options: --include-arches="amd64" Signed-off-by: Agostino Sarubbo <ago@gentoo.org> - Justin Lecher · gentoo
sci-biology/trnascan-se: Bump EAPI to 6
Package-Manager: Portage-2.3.5, Repoman-2.3.2 Signed-off-by: Justin Lecher <jlec@gentoo.org> - Robin H. Johnson · gentoo
Drop $Id$ per council decision in bug #611234.
Signed-off-by: Robin H. Johnson <robbat2@gentoo.org> - Robin H. Johnson · gentoo
proj/gentoo: Initial commit
This commit represents a new era for Gentoo: Storing the gentoo-x86 tree in Git, as converted from CVS. This commit is the start of the NEW history. Any historical data is intended to be grafted onto this point. Creation process: 1. Take final CVS checkout snapshot 2. Remove ALL ChangeLog* files 3. Transform all Manifests to thin 4. Remove empty Manifests 5. Convert all stale $Header$/$Id$ CVS keywords to non-expanded Git $Id$ 5.1. Do not touch files with -kb/-ko keyword flags. Signed-off-by: Robin H. Johnson <robbat2@gentoo.org> X-Thanks: Alec Warner <antarus@gentoo.org> - did the GSoC 2006 migration tests X-Thanks: Robin H. Johnson <robbat2@gentoo.org> - infra guy, herding this project X-Thanks: Nguyen Thai Ngoc Duy <pclouds@gentoo.org> - Former Gentoo developer, wrote Git features for the migration X-Thanks: Brian Harring <ferringb@gentoo.org> - wrote much python to improve cvs2svn X-Thanks: Rich Freeman <rich0@gentoo.org> - validation scripts X-Thanks: Patrick Lauer <patrick@gentoo.org> - Gentoo dev, running new 2014 work in migration X-Thanks: Michał Górny <mgorny@gentoo.org> - scripts, QA, nagging X-Thanks: All of other Gentoo developers - many ideas and lots of paint on the bikeshed