sci-biology / uchime

Fast, accurate chimera detection

Official package sites : http://www.drive5.com/uchime/ ·

UCHIME is a new algorithm for detecting chimeric sequences. It was developed in collaboration with Brian Haas, Jose Carlos Clemente, Chris Quince and Rob Knight. Chimeras are commonly created during DNA sample amplification by PCR, especially in community sequencing experiments using single regions such as the 16S rRNA gene in bacteria or the fungal ITS region. UCHIME can detect chimeras using a reference database or de novo using abundance information on the assumption that chimeras are less abundant than their parents because they must have undergone fewer rounds of amplification.

v4.2.40 :: 0 :: gentoo

Modified
License
public-domain
Keywords
amd64 x86 ~amd64-linux ~x86-linux
USE flags
debug

General

debug
Enable extra debug codepaths, like asserts and extra output. If you want to get meaningful backtraces see https://wiki.gentoo.org/wiki/Project:Quality_Assurance/Backtraces

dev-util / cmake : Cross platform Make

sys-devel / make : Standard tool to compile source trees

sci-biology / mothur : A suite of algorithms for ecological bioinformatics

Robin H. Johnson · gentoo
Drop $Id$ per council decision in bug #611234.
Signed-off-by: Robin H. Johnson <robbat2@gentoo.org>
Johannes Huber · gentoo
sci-biology/uchime: EAPI 6
Package-Manager: Portage-2.3.3, Repoman-2.3.1
Agostino Sarubbo · gentoo
sci-biology/uchime: x86 stable wrt bug #556066
Package-Manager: portage-2.2.20.1 RepoMan-Options: --include-arches="x86"
Robin H. Johnson · gentoo
proj/gentoo: Initial commit
This commit represents a new era for Gentoo: Storing the gentoo-x86 tree in Git, as converted from CVS. This commit is the start of the NEW history. Any historical data is intended to be grafted onto this point. Creation process: 1. Take final CVS checkout snapshot 2. Remove ALL ChangeLog* files 3. Transform all Manifests to thin 4. Remove empty Manifests 5. Convert all stale $Header$/$Id$ CVS keywords to non-expanded Git $Id$ 5.1. Do not touch files with -kb/-ko keyword flags. Signed-off-by: Robin H. Johnson <robbat2@gentoo.org> X-Thanks: Alec Warner <antarus@gentoo.org> - did the GSoC 2006 migration tests X-Thanks: Robin H. Johnson <robbat2@gentoo.org> - infra guy, herding this project X-Thanks: Nguyen Thai Ngoc Duy <pclouds@gentoo.org> - Former Gentoo developer, wrote Git features for the migration X-Thanks: Brian Harring <ferringb@gentoo.org> - wrote much python to improve cvs2svn X-Thanks: Rich Freeman <rich0@gentoo.org> - validation scripts X-Thanks: Patrick Lauer <patrick@gentoo.org> - Gentoo dev, running new 2014 work in migration X-Thanks: Michał Górny <mgorny@gentoo.org> - scripts, QA, nagging X-Thanks: All of other Gentoo developers - many ideas and lots of paint on the bikeshed