{"bugs":[],"categories":[{"categoryid":353,"name":"sci-biology","summary":"The sci-biology category contains software that can be used in biological and related scientific environments."}],"changelog":[{"authoremail":"repomirrorci@gentoo.org","authorname":"Repository mirror & CI","commitid":"a198e862478387fe37b4d232d51a3edb558cd3e0","committime":"2025-12-19T10:01:01","packageid":59697,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"grobian@gentoo.org","authorname":"Fabian Groffen","body":"Bug: https:\/\/bugs.gentoo.org\/473598\nBug: https:\/\/bugs.gentoo.org\/720224\nSigned-off-by: Fabian Groffen ","commitid":"2d25fad95cbaa525c8945d8e582c749d49524f49","committime":"2025-12-19T09:25:43","packageid":59697,"repoid":1,"summary":"*\/*: drop *-linux keywords"},{"authoremail":"repomirrorci@gentoo.org","authorname":"Repository mirror & CI","commitid":"71bd9032701a39f032076a4206bc3beb92be5d78","committime":"2025-10-05T18:03:52","packageid":59697,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"asturm@gentoo.org","authorname":"Andreas Sturmlechner","body":"Raise cmake_minimum_required to 3.31\n\nCloses: https:\/\/bugs.gentoo.org\/957440\nSigned-off-by: Andreas Sturmlechner ","commitid":"f527c122d42327668756e73ea831ca0345410e75","committime":"2025-10-05T14:12:29","packageid":59697,"repoid":1,"summary":"sci-biology\/uchime: Fix build w\/ cmake-4"},{"authoremail":"repomirrorci@gentoo.org","authorname":"Repository mirror & CI","commitid":"f2979793991144637956e4225ce4d0235900c1a2","committime":"2023-06-09T15:16:56","packageid":59697,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"arthurzam@gentoo.org","authorname":"Arthur Zamarin","body":"Signed-off-by: Arthur Zamarin ","commitid":"d0eaea76e3d13dfdb708a50767410903db35298f","committime":"2023-06-03T14:46:44","packageid":59697,"repoid":1,"summary":"sci-biology\/uchime: destabilize for ~x86"},{"authoremail":"repomirrorci@gentoo.org","authorname":"Repository mirror & CI","commitid":"2dbcfbecc86e179a964e328f8e5ac037ad374e4b","committime":"2022-07-15T08:33:31","packageid":59697,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"soap@gentoo.org","authorname":"David Seifert","body":"Signed-off-by: David Seifert ","commitid":"37c6ef284900aec1695de5b39f830b83415792ca","committime":"2022-07-15T08:23:58","packageid":59697,"repoid":1,"summary":"sci-biology\/uchime: update EAPI 7 -> 8"},{"authoremail":"repomirrorci@gentoo.org","authorname":"Repository mirror & CI","commitid":"add702528e5298dd9fa59d068970d8117cb89e03","committime":"2022-07-15T08:18:39","packageid":59697,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"sam@gentoo.org","authorname":"Sam James","body":"Signed-off-by: Sam James ","commitid":"77f6cb64b11c91d7fac1418731ac29bf204d6327","committime":"2022-07-15T08:03:51","packageid":59697,"repoid":1,"summary":"sci-biology\/uchime: use append-cxxflags"},{"authoremail":"repomirrorci@gentoo.org","authorname":"Repository mirror & CI","commitid":"8271a1f86bd7875249856b0b23183d7ffc6ecd66","committime":"2021-06-15T02:49:55","packageid":59697,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"sam@gentoo.org","authorname":"Sam James","body":"Force C++14 for now because we don't really want a large patch for\ntypedefs.\n\nCloses: https:\/\/bugs.gentoo.org\/786297\nSigned-off-by: Sam James ","commitid":"9bb2017d31f4467386be5262aa036ecf5dabf97a","committime":"2021-06-15T02:35:24","packageid":59697,"repoid":1,"summary":"sci-biology\/uchime: workaround failure with GCC 11"},{"authoremail":"repomirrorci@gentoo.org","authorname":"Repository mirror & CI","commitid":"cc30be1f0a0f9cbf0aeeeb8652bb3dd2d5a493a2","committime":"2021-03-07T19:05:47","packageid":59697,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"asturm@gentoo.org","authorname":"Andreas Sturmlechner","body":"Package-Manager: Portage-3.0.16, Repoman-3.0.2\nSigned-off-by: Andreas Sturmlechner ","commitid":"132247f2a76e16d49fa38bfc3933ca61f4db78e6","committime":"2021-03-07T16:51:50","packageid":59697,"repoid":1,"summary":"sci-biology\/uchime: EAPI-7 bump, use cmake.eclass, https, fix HOMEPAGE"},{"authoremail":"repo-qa-checks@gentoo.org","authorname":"Repository QA checks","commitid":"25093d6359f778b8d1052f66ba9e26fc29ded21a","committime":"2017-02-28T20:35:29","packageid":59697,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"robbat2@gentoo.org","authorname":"Robin H. Johnson","body":"Signed-off-by: Robin H. Johnson ","commitid":"61b861acd7b49083dab687e133f30f3331cb7480","committime":"2017-02-28T19:47:27","packageid":59697,"repoid":1,"summary":"Drop $Id$ per council decision in bug #611234."},{"authoremail":"repo-qa-checks@gentoo.org","authorname":"Repository QA checks","commitid":"91cbec870a14110ae43f5a173cc1adcd9899700e","committime":"2017-02-08T12:41:53","packageid":59697,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"johu@gentoo.org","authorname":"Johannes Huber","body":"Package-Manager: Portage-2.3.3, Repoman-2.3.1","commitid":"8ae066be32756c3fd9c4398878c71ac31f261056","committime":"2017-02-08T12:34:44","packageid":59697,"repoid":1,"summary":"sci-biology\/uchime: EAPI 6"},{"authoremail":"repo-qa-checks@gentoo.org","authorname":"Repository QA checks","commitid":"f73652f9bc764aad100866df8c87b5b7949d7c9a","committime":"2015-09-25T14:41:43","packageid":59697,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"ago@gentoo.org","authorname":"Agostino Sarubbo","body":"Package-Manager: portage-2.2.20.1\nRepoMan-Options: --include-arches=\"x86\"","commitid":"64aa73a6893547ccd963d564e6fcede78605c78e","committime":"2015-09-25T14:23:15","packageid":59697,"repoid":1,"summary":"sci-biology\/uchime: x86 stable wrt bug #556066"},{"authoremail":"repo-qa-checks@gentoo.org","authorname":"Repository QA checks","commitid":"945f0d2a26da4f944fd06ad6a874f69d37ce1e06","committime":"2015-08-09T09:26:46","packageid":59697,"repoid":1,"summary":"2015-08-09 09:26:21 UTC"},{"authoremail":"robbat2@gentoo.org","authorname":"Robin H. Johnson","body":"This commit represents a new era for Gentoo:\nStoring the gentoo-x86 tree in Git, as converted from CVS.\n\nThis commit is the start of the NEW history.\nAny historical data is intended to be grafted onto this point.\n\nCreation process:\n1. Take final CVS checkout snapshot\n2. Remove ALL ChangeLog* files\n3. Transform all Manifests to thin\n4. Remove empty Manifests\n5. Convert all stale $Header$\/$Id$ CVS keywords to non-expanded Git $Id$\n5.1. Do not touch files with -kb\/-ko keyword flags.\n\nSigned-off-by: Robin H. Johnson \nX-Thanks: Alec Warner - did the GSoC 2006 migration tests\nX-Thanks: Robin H. Johnson - infra guy, herding this project\nX-Thanks: Nguyen Thai Ngoc Duy - Former Gentoo developer, wrote Git features for the migration\nX-Thanks: Brian Harring - wrote much python to improve cvs2svn\nX-Thanks: Rich Freeman - validation scripts\nX-Thanks: Patrick Lauer - Gentoo dev, running new 2014 work in migration\nX-Thanks: Michał Górny - scripts, QA, nagging\nX-Thanks: All of other Gentoo developers - many ideas and lots of paint on the bikeshed","commitid":"56bd759df1d0c750a065b8c845e93d5dfa6b549d","committime":"2015-08-08T20:49:04","packageid":59697,"repoid":1,"summary":"proj\/gentoo: Initial commit"},{"authoremail":"repo-qa-checks@gentoo.org","authorname":"Repository QA checks","commitid":"08e6a967afc640a2d2a881b970374144624cdac2","committime":"2015-08-03T14:32:44","packageid":59697,"repoid":1,"summary":"2015-08-03 14:32:29 UTC"},{"authoremail":"repo-qa-checks@gentoo.org","authorname":"Repository QA checks","commitid":"a637bd65b7fef8e2be4e7fc6e9097479372e0e2e","committime":"2015-06-19T16:38:33","packageid":59697,"repoid":1,"summary":"2015-06-19 16:35:30 UTC"}],"dependencies":[],"depending":[{"block":false,"categoryid":353,"description":"Suite of algorithms for ecological bioinformatics","ebuildids":[887332,887332],"firstseen":"2010-05-04T00:54:45.661860","maintainer":"sci-biology@gentoo.org","maintainername":"Gentoo Biology Project","name":"mothur","packageid":45640}],"ebuilds":[{"archs":["amd64","~x86"],"ebuildid":756353,"firstseen":"2022-07-15T09:42:03.040085","license":"public-domain","moddate":"2026-03-28T18:04:21","packageid":59697,"repoid":1,"slot":"0","uses":[],"version":"4.2.40-r1"}],"masks":[],"package":{"categoryid":353,"description":"Fast, accurate chimera detection","firstseen":"2012-08-15T14:43:37.194721","maintainer":"sci-biology@gentoo.org","maintainername":"Gentoo Biology Project","name":"uchime","packageid":59697,"summary":"UCHIME is a new algorithm for detecting chimeric sequences. It was developed in collaboration with Brian Haas, Jose Carlos Clemente, Chris Quince and Rob Knight. Chimeras are commonly created during DNA sample amplification by PCR, especially in community sequencing experiments using single regions such as the 16S rRNA gene in bacteria or the fungal ITS region. UCHIME can detect chimeras using a reference database or de novo using abundance information on the assumption that chimeras are less abundant than their parents because they must have undergone fewer rounds of amplification."},"rdependencies":[],"repos":[{"branch":"master","lastcommit":"a0f336e103abca93ea825fce9742e955005e7e3d","name":"gentoo","path":"\/usr\/portage","repoid":1,"upstream":"origin"}],"tracked":false,"urls":["https:\/\/www.drive5.com\/usearch\/manual\/uchime_algo.html"],"uses":[]}