sci-biology / ucsc-genome-browser

The UCSC genome browser suite, also known as Jim Kent's library and GoldenPath

Official package sites : http://genome.ucsc.edu/ ·

v260-r2 :: 0 :: gentoo

Modified
License
blat
Keywords
~amd64 ~x86
USE flags
mysql server static-libs vhosts

General

mysql
Add mySQL Database support
server
Install genome browser Web application. If this flag is off, only libraries and utilities from the suite are installed.
static-libs
Build static versions of dynamic libraries as well
vhosts
Add support for installing web-based applications into a virtual-hosting environment

app-admin / webapp-config : Gentoo's installer for web-based applications

dev-db / mysql-connector-c : C client library for MariaDB/MySQL

dev-libs / openssl : Robust, full-featured Open Source Toolkit for the Transport Layer Security (TLS)

media-libs / libpng : Portable Network Graphics library

virtual / httpd-cgi : Virtual for CGI-enabled webservers

app-admin / webapp-config : Gentoo's installer for web-based applications

dev-db / mysql-connector-c : C client library for MariaDB/MySQL

dev-libs / openssl : Robust, full-featured Open Source Toolkit for the Transport Layer Security (TLS)

media-libs / libpng : Portable Network Graphics library

virtual / httpd-cgi : Virtual for CGI-enabled webservers

402835
sci-biology/ucsc-genome-browser: add -fPIC to CFLAGS and USE=+static-libs
Repository mirror & CI · gentoo
Merge updates from master
Sam James · gentoo
sci-biology/ucsc-genome-browser: BDEPEND on cpio
Closes: https://bugs.gentoo.org/688748 Signed-off-by: Sam James <sam@gentoo.org>
Sam James · gentoo
sci-biology/ucsc-genome-browser: EAPI 8
Signed-off-by: Sam James <sam@gentoo.org>
Sam James · gentoo
sci-biology/ucsc-genome-browser: fix USE=-server
Signed-off-by: Sam James <sam@gentoo.org>
Sam James · gentoo
sci-biology/ucsc-genome-browser: workaround modern C issues
Build with -std=gnu89 as it has many issues. Closes: https://bugs.gentoo.org/831491 Closes: https://bugs.gentoo.org/919200 Closes: https://bugs.gentoo.org/921261 Signed-off-by: Sam James <sam@gentoo.org>
Repository mirror & CI · gentoo
Merge updates from master
Sam James · gentoo
sci-biology/ucsc-genome-browser: fix VariableScope ((E)ROOT)
Signed-off-by: Sam James <sam@gentoo.org>
Repository mirror & CI · gentoo
Merge updates from master
Sam James · gentoo
sci-biology/ucsc-genome-browser: add gcc 10 workaround
Closes: https://bugs.gentoo.org/708064 Signed-off-by: Sam James <sam@gentoo.org>
Repository mirror & CI · gentoo
Merge updates from master
Brian Evans · gentoo
sci-biology/ucsc-genome-browser: Revbump to fix dependencies
Non-maintainer commit Closes: https://bugs.gentoo.org/667578 Closes: https://bugs.gentoo.org/666050 Package-Manager: Portage-2.3.60, Repoman-2.3.12 Signed-off-by: Brian Evans <grknight@gentoo.org>
Robin H. Johnson · gentoo
Drop $Id$ per council decision in bug #611234.
Signed-off-by: Robin H. Johnson <robbat2@gentoo.org>
Robin H. Johnson · gentoo
proj/gentoo: Initial commit
This commit represents a new era for Gentoo: Storing the gentoo-x86 tree in Git, as converted from CVS. This commit is the start of the NEW history. Any historical data is intended to be grafted onto this point. Creation process: 1. Take final CVS checkout snapshot 2. Remove ALL ChangeLog* files 3. Transform all Manifests to thin 4. Remove empty Manifests 5. Convert all stale $Header$/$Id$ CVS keywords to non-expanded Git $Id$ 5.1. Do not touch files with -kb/-ko keyword flags. Signed-off-by: Robin H. Johnson <robbat2@gentoo.org> X-Thanks: Alec Warner <antarus@gentoo.org> - did the GSoC 2006 migration tests X-Thanks: Robin H. Johnson <robbat2@gentoo.org> - infra guy, herding this project X-Thanks: Nguyen Thai Ngoc Duy <pclouds@gentoo.org> - Former Gentoo developer, wrote Git features for the migration X-Thanks: Brian Harring <ferringb@gentoo.org> - wrote much python to improve cvs2svn X-Thanks: Rich Freeman <rich0@gentoo.org> - validation scripts X-Thanks: Patrick Lauer <patrick@gentoo.org> - Gentoo dev, running new 2014 work in migration X-Thanks: Michał Górny <mgorny@gentoo.org> - scripts, QA, nagging X-Thanks: All of other Gentoo developers - many ideas and lots of paint on the bikeshed