{"bugs":[{"bugid":402835,"firstseen":"2025-07-11T02:48:40.189262","severity":"normal","status":"UNCONFIRMED","summary":"sci-biology\/ucsc-genome-browser: add -fPIC to CFLAGS and USE=+static-libs"}],"categories":[{"categoryid":338,"name":"app-admin","summary":"The app-admin category contains non-core applications which relate to system administration."},{"categoryid":452,"name":"dev-db","summary":"The dev-db category contains libraries and utilities for database related programming."},{"categoryid":393,"name":"dev-libs","summary":"The dev-libs category contains various miscellaneous programming libraries."},{"categoryid":438,"name":"media-libs","summary":"The media-libs category contains media-related libraries."},{"categoryid":353,"name":"sci-biology","summary":"The sci-biology category contains software that can be used in biological and related scientific environments."},{"categoryid":396,"name":"virtual","summary":"The virtual category contains packages which satisfy virtual dependencies."}],"changelog":[{"authoremail":"repomirrorci@gentoo.org","authorname":"Repository mirror & CI","commitid":"3c9a5e15c4afc6e9dbf549d75c7a80a385750330","committime":"2024-06-01T23:33:40","packageid":53877,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"sam@gentoo.org","authorname":"Sam James","body":"Closes: https:\/\/bugs.gentoo.org\/688748\nSigned-off-by: Sam James ","commitid":"443760b1a3018610b10bbf69a6b4b52331d4fc95","committime":"2024-06-01T23:20:12","packageid":53877,"repoid":1,"summary":"sci-biology\/ucsc-genome-browser: BDEPEND on cpio"},{"authoremail":"sam@gentoo.org","authorname":"Sam James","body":"Signed-off-by: Sam James ","commitid":"7955b031affbce3bce05db8f44802c37a34c6c46","committime":"2024-06-01T23:18:24","packageid":53877,"repoid":1,"summary":"sci-biology\/ucsc-genome-browser: EAPI 8"},{"authoremail":"sam@gentoo.org","authorname":"Sam James","body":"Signed-off-by: Sam James ","commitid":"cdb7db92ed8e655db3e0af0077aca1bd90a2d352","committime":"2024-06-01T23:15:44","packageid":53877,"repoid":1,"summary":"sci-biology\/ucsc-genome-browser: fix USE=-server"},{"authoremail":"sam@gentoo.org","authorname":"Sam James","body":"Build with -std=gnu89 as it has many issues.\n\nCloses: https:\/\/bugs.gentoo.org\/831491\nCloses: https:\/\/bugs.gentoo.org\/919200\nCloses: https:\/\/bugs.gentoo.org\/921261\nSigned-off-by: Sam James ","commitid":"b7cf0f3d7cbe8fa13b188d50b16f47fd726c4e2a","committime":"2024-06-01T23:15:05","packageid":53877,"repoid":1,"summary":"sci-biology\/ucsc-genome-browser: workaround modern C issues"},{"authoremail":"repomirrorci@gentoo.org","authorname":"Repository mirror & CI","commitid":"1eb59ad9a3e87f4fd9e433a785c63c5aaa2cb08a","committime":"2021-06-11T00:35:07","packageid":53877,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"sam@gentoo.org","authorname":"Sam James","body":"Signed-off-by: Sam James ","commitid":"bbaa144be1ae371f080bd71813b288fa3f1ff51b","committime":"2021-06-11T00:26:53","packageid":53877,"repoid":1,"summary":"sci-biology\/ucsc-genome-browser: fix VariableScope ((E)ROOT)"},{"authoremail":"repomirrorci@gentoo.org","authorname":"Repository mirror & CI","commitid":"2324871dbe1c1d8b4ed1a4bb5429ab9c4865bfe5","committime":"2021-03-03T21:37:02","packageid":53877,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"sam@gentoo.org","authorname":"Sam James","body":"Closes: https:\/\/bugs.gentoo.org\/708064\nSigned-off-by: Sam James ","commitid":"7352a350f876c61ef8fec8e50da226330dfdf6f3","committime":"2021-03-03T21:17:26","packageid":53877,"repoid":1,"summary":"sci-biology\/ucsc-genome-browser: add gcc 10 workaround"},{"authoremail":"repomirrorci@gentoo.org","authorname":"Repository mirror & CI","commitid":"bbff5919a99bb41a61a90c98d4888c5c1dbb55af","committime":"2019-02-15T21:23:51","packageid":53877,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"grknight@gentoo.org","authorname":"Brian Evans","body":"Non-maintainer commit\n\nCloses: https:\/\/bugs.gentoo.org\/667578\nCloses: https:\/\/bugs.gentoo.org\/666050\nPackage-Manager: Portage-2.3.60, Repoman-2.3.12\nSigned-off-by: Brian Evans ","commitid":"3a0588753c86399d7c514bc34d22f48687cbcbfe","committime":"2019-02-15T21:09:14","packageid":53877,"repoid":1,"summary":"sci-biology\/ucsc-genome-browser: Revbump to fix dependencies"},{"authoremail":"repo-qa-checks@gentoo.org","authorname":"Repository QA checks","commitid":"25093d6359f778b8d1052f66ba9e26fc29ded21a","committime":"2017-02-28T20:35:29","packageid":53877,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"robbat2@gentoo.org","authorname":"Robin H. Johnson","body":"Signed-off-by: Robin H. Johnson ","commitid":"61b861acd7b49083dab687e133f30f3331cb7480","committime":"2017-02-28T19:47:27","packageid":53877,"repoid":1,"summary":"Drop $Id$ per council decision in bug #611234."},{"authoremail":"repo-qa-checks@gentoo.org","authorname":"Repository QA checks","commitid":"945f0d2a26da4f944fd06ad6a874f69d37ce1e06","committime":"2015-08-09T09:26:46","packageid":53877,"repoid":1,"summary":"2015-08-09 09:26:21 UTC"},{"authoremail":"robbat2@gentoo.org","authorname":"Robin H. Johnson","body":"This commit represents a new era for Gentoo:\nStoring the gentoo-x86 tree in Git, as converted from CVS.\n\nThis commit is the start of the NEW history.\nAny historical data is intended to be grafted onto this point.\n\nCreation process:\n1. Take final CVS checkout snapshot\n2. Remove ALL ChangeLog* files\n3. Transform all Manifests to thin\n4. Remove empty Manifests\n5. Convert all stale $Header$\/$Id$ CVS keywords to non-expanded Git $Id$\n5.1. Do not touch files with -kb\/-ko keyword flags.\n\nSigned-off-by: Robin H. Johnson \nX-Thanks: Alec Warner - did the GSoC 2006 migration tests\nX-Thanks: Robin H. Johnson - infra guy, herding this project\nX-Thanks: Nguyen Thai Ngoc Duy - Former Gentoo developer, wrote Git features for the migration\nX-Thanks: Brian Harring - wrote much python to improve cvs2svn\nX-Thanks: Rich Freeman - validation scripts\nX-Thanks: Patrick Lauer - Gentoo dev, running new 2014 work in migration\nX-Thanks: Michał Górny - scripts, QA, nagging\nX-Thanks: All of other Gentoo developers - many ideas and lots of paint on the bikeshed","commitid":"56bd759df1d0c750a065b8c845e93d5dfa6b549d","committime":"2015-08-08T20:49:04","packageid":53877,"repoid":1,"summary":"proj\/gentoo: Initial commit"},{"authoremail":"repo-qa-checks@gentoo.org","authorname":"Repository QA checks","commitid":"a637bd65b7fef8e2be4e7fc6e9097479372e0e2e","committime":"2015-06-19T16:38:33","packageid":53877,"repoid":1,"summary":"2015-06-19 16:35:30 UTC"}],"dependencies":[{"block":false,"categoryid":338,"description":"Gentoo's installer for web-based applications","ebuildids":[828490],"firstseen":"2010-05-04T00:54:45.661860","maintainer":"twitch153@gentoo.org","maintainername":"Devan Franchini","name":"webapp-config","packageid":41938},{"block":false,"categoryid":396,"description":"Virtual for CGI-enabled webservers","ebuildids":[828490],"firstseen":"2010-05-04T00:54:45.661860","maintainer":"web-apps@gentoo.org","maintainername":"Gentoo Webapps","name":"httpd-cgi","packageid":47571},{"block":false,"categoryid":393,"description":"Robust, full-featured Open Source Toolkit for the Transport Layer Security (TLS)","ebuildids":[828490],"firstseen":"2010-05-04T00:54:45.661860","maintainer":"base-system@gentoo.org","maintainername":"Gentoo Base System","name":"openssl","packageid":47630},{"block":false,"categoryid":438,"description":"Portable Network Graphics library","ebuildids":[828490],"firstseen":"2010-05-04T00:54:45.661860","maintainer":"base-system@gentoo.org","maintainername":"Gentoo Base System","name":"libpng","packageid":49028},{"block":false,"categoryid":452,"description":"C client library for MariaDB\/MySQL","ebuildids":[828490],"firstseen":"2015-07-18T13:39:36.291834","maintainer":"mysql-bugs@gentoo.org","maintainername":"MySQL","name":"mysql-connector-c","packageid":63873}],"depending":[],"ebuilds":[{"archs":["~amd64","~x86"],"ebuildid":828490,"firstseen":"2024-06-02T00:51:55.946127","license":"blat","moddate":"2026-03-22T20:20:57","packageid":53877,"repoid":1,"slot":"0","uses":["mysql","server","static-libs","vhosts"],"version":"260-r2"}],"masks":[],"package":{"categoryid":353,"description":"The UCSC genome browser suite, also known as Jim Kent's library and GoldenPath","firstseen":"2010-05-04T00:54:45.661860","maintainer":"sci-biology@gentoo.org","maintainername":"Gentoo Biology Project","name":"ucsc-genome-browser","packageid":53877},"rdependencies":[{"block":false,"categoryid":338,"description":"Gentoo's installer for web-based applications","ebuildids":[828490],"firstseen":"2010-05-04T00:54:45.661860","maintainer":"twitch153@gentoo.org","maintainername":"Devan Franchini","name":"webapp-config","packageid":41938},{"block":false,"categoryid":396,"description":"Virtual for CGI-enabled webservers","ebuildids":[828490],"firstseen":"2010-05-04T00:54:45.661860","maintainer":"web-apps@gentoo.org","maintainername":"Gentoo Webapps","name":"httpd-cgi","packageid":47571},{"block":false,"categoryid":393,"description":"Robust, full-featured Open Source Toolkit for the Transport Layer Security (TLS)","ebuildids":[828490],"firstseen":"2010-05-04T00:54:45.661860","maintainer":"base-system@gentoo.org","maintainername":"Gentoo Base System","name":"openssl","packageid":47630},{"block":false,"categoryid":438,"description":"Portable Network Graphics library","ebuildids":[828490],"firstseen":"2010-05-04T00:54:45.661860","maintainer":"base-system@gentoo.org","maintainername":"Gentoo Base System","name":"libpng","packageid":49028},{"block":false,"categoryid":452,"description":"C client library for MariaDB\/MySQL","ebuildids":[828490],"firstseen":"2015-07-18T13:39:36.291834","maintainer":"mysql-bugs@gentoo.org","maintainername":"MySQL","name":"mysql-connector-c","packageid":63873}],"repos":[{"branch":"master","lastcommit":"f87ce2b74421571078063820dc1065e7089c9fa7","name":"gentoo","path":"\/usr\/portage","repoid":1,"upstream":"origin"}],"tracked":false,"urls":["http:\/\/genome.ucsc.edu\/"],"uses":[{"defaultflag":true,"description":"Add mySQL Database support","isdefault":true,"use":"mysql"},{"defaultflag":true,"description":"Install genome browser Web application. If this flag is off, only libraries and utilities from the suite are installed.","isdefault":true,"packageid":53877,"use":"server"},{"description":"Build static versions of dynamic libraries as well","isdefault":false,"use":"static-libs"},{"description":"Add support for installing web-based applications into a virtual-hosting environment","isdefault":false,"use":"vhosts"}]}