{"bugs":[{"bugid":389765,"firstseen":"2025-07-11T02:48:40.189262","severity":"enhancement","status":"UNCONFIRMED","summary":"sci-biology\/unafold - add graphic capabilities of mfold_utils"},{"bugid":597242,"firstseen":"2025-07-11T02:48:40.189262","severity":"normal","status":"UNCONFIRMED","summary":"sci-biology\/mfold_utils: obtain structure plots and dot plots from sci-biology\/unafold"},{"bugid":900557,"firstseen":"2025-07-11T02:48:40.189262","severity":"normal","status":"CONFIRMED","summary":"sci-biology\/unafold-3.8-r1 has implicit function declarations in configure logs (GCC-13-SYSTEM)"},{"bugid":941896,"firstseen":"2025-07-11T02:48:40.189262","severity":"normal","status":"CONFIRMED","summary":"sci-biology\/unafold-3.8-r1 - [meson] [libtool] [gcc-15] Failed running aclocal!"},{"bugid":945737,"firstseen":"2025-07-11T02:48:40.189262","severity":"normal","status":"CONFIRMED","summary":"sci-biology\/unafold-3.8-r1 fails to compile: getopt.c:404:21: error: too many arguments to function getenv"}],"categories":[{"categoryid":417,"name":"games-puzzle","summary":"The games-puzzle category contains puzzle games."},{"categoryid":438,"name":"media-libs","summary":"The media-libs category contains media-related libraries."},{"categoryid":353,"name":"sci-biology","summary":"The sci-biology category contains software that can be used in biological and related scientific environments."},{"categoryid":396,"name":"virtual","summary":"The virtual category contains packages which satisfy virtual dependencies."}],"changelog":[{"authoremail":"repomirrorci@gentoo.org","authorname":"Repository mirror & CI","commitid":"6b94615d157f39d96bcab9ab136d3ae3da20cbf9","committime":"2025-07-05T05:37:06","packageid":56702,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"sam@gentoo.org","authorname":"Sam James","body":"* Needs dev-lang\/perl in general for building\n* Needs dev-perl\/XML-Parser for tests\n\nCloses: https:\/\/bugs.gentoo.org\/924694\nSigned-off-by: Sam James ","commitid":"74dd2b21a3581ac61964f7ea8d3074bbaae83181","committime":"2025-07-05T05:09:28","packageid":56702,"repoid":1,"summary":"sci-biology\/unafold: add missing Perl BDEPENDs"},{"authoremail":"repomirrorci@gentoo.org","authorname":"Repository mirror & CI","commitid":"d385f1a98c096585ae569e73f1e1240162cc0791","committime":"2024-01-15T16:18:21","packageid":56702,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"mgorny@gentoo.org","authorname":"Michał Górny","body":"Signed-off-by: Michał Górny ","commitid":"e92da579956495086c78eac089068406effd57e5","committime":"2024-01-14T20:19:30","packageid":56702,"repoid":1,"summary":"Move {sys-devel → dev-build}\/autoconf-archive"},{"authoremail":"repomirrorci@gentoo.org","authorname":"Repository mirror & CI","commitid":"59c141313a357a9030ebf5ea9411c95ba6f709c7","committime":"2022-10-23T19:31:46","packageid":56702,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"soap@gentoo.org","authorname":"David Seifert","body":"Closes: https:\/\/bugs.gentoo.org\/875041\nSigned-off-by: David Seifert ","commitid":"347343bc74b8a7625265a9e5ecfa05fb6b37d664","committime":"2022-10-23T19:18:07","packageid":56702,"repoid":1,"summary":"sci-biology\/unafold: fix clang 16 build"},{"authoremail":"repomirrorci@gentoo.org","authorname":"Repository mirror & CI","commitid":"e5353d231ce3b7ce6238f952b5a39ccc17b5e82a","committime":"2020-10-27T22:05:17","packageid":56702,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"soap@gentoo.org","authorname":"David Seifert","body":"Package-Manager: Portage-3.0.8, Repoman-3.0.2\nSigned-off-by: David Seifert ","commitid":"668d616aed66a78485aa7850fe23fdb9c23c6071","committime":"2020-10-27T21:40:01","packageid":56702,"repoid":1,"summary":"sci-biology\/unafold: Port to EAPI 7"},{"authoremail":"repo-qa-checks@gentoo.org","authorname":"Repository QA checks","commitid":"a63ee2552ad636fdd61d2fa12e63c9a6fe53a900","committime":"2017-04-10T21:01:52","packageid":56702,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"dilfridge@gentoo.org","authorname":"Andreas K. Hüttel","body":"Package-Manager: Portage-2.3.5, Repoman-2.3.2","commitid":"784def5e0a41b839fdd743dead6f22571882d49c","committime":"2017-04-10T20:35:41","packageid":56702,"repoid":1,"summary":"sci-biology\/unafold: Remove old, bug 605728"},{"authoremail":"repo-qa-checks@gentoo.org","authorname":"Repository QA checks","commitid":"25093d6359f778b8d1052f66ba9e26fc29ded21a","committime":"2017-02-28T20:35:29","packageid":56702,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"robbat2@gentoo.org","authorname":"Robin H. Johnson","body":"Signed-off-by: Robin H. Johnson ","commitid":"61b861acd7b49083dab687e133f30f3331cb7480","committime":"2017-02-28T19:47:27","packageid":56702,"repoid":1,"summary":"Drop $Id$ per council decision in bug #611234."},{"authoremail":"repo-qa-checks@gentoo.org","authorname":"Repository QA checks","commitid":"945f0d2a26da4f944fd06ad6a874f69d37ce1e06","committime":"2015-08-09T09:26:46","packageid":56702,"repoid":1,"summary":"2015-08-09 09:26:21 UTC"},{"authoremail":"robbat2@gentoo.org","authorname":"Robin H. Johnson","body":"This commit represents a new era for Gentoo:\nStoring the gentoo-x86 tree in Git, as converted from CVS.\n\nThis commit is the start of the NEW history.\nAny historical data is intended to be grafted onto this point.\n\nCreation process:\n1. Take final CVS checkout snapshot\n2. Remove ALL ChangeLog* files\n3. Transform all Manifests to thin\n4. Remove empty Manifests\n5. Convert all stale $Header$\/$Id$ CVS keywords to non-expanded Git $Id$\n5.1. Do not touch files with -kb\/-ko keyword flags.\n\nSigned-off-by: Robin H. Johnson \nX-Thanks: Alec Warner - did the GSoC 2006 migration tests\nX-Thanks: Robin H. Johnson - infra guy, herding this project\nX-Thanks: Nguyen Thai Ngoc Duy - Former Gentoo developer, wrote Git features for the migration\nX-Thanks: Brian Harring - wrote much python to improve cvs2svn\nX-Thanks: Rich Freeman - validation scripts\nX-Thanks: Patrick Lauer - Gentoo dev, running new 2014 work in migration\nX-Thanks: Michał Górny - scripts, QA, nagging\nX-Thanks: All of other Gentoo developers - many ideas and lots of paint on the bikeshed","commitid":"56bd759df1d0c750a065b8c845e93d5dfa6b549d","committime":"2015-08-08T20:49:04","packageid":56702,"repoid":1,"summary":"proj\/gentoo: Initial commit"},{"authoremail":"repo-qa-checks@gentoo.org","authorname":"Repository QA checks","commitid":"a637bd65b7fef8e2be4e7fc6e9097479372e0e2e","committime":"2015-06-19T16:38:33","packageid":56702,"repoid":1,"summary":"2015-06-19 16:35:30 UTC"}],"dependencies":[{"block":false,"categoryid":438,"description":"A free OpenGL utility toolkit, the open-sourced alternative to the GLUT library","ebuildids":[478517],"firstseen":"2010-05-04T00:54:45.661860","maintainer":"x11@gentoo.org","maintainername":"X11","name":"freeglut","packageid":47734,"summary":"Freeglut provides an open-source alternative to the OpenGL Utility Toolkit (GLUT) library. It is actively developed and maintained, while not being restricted by its license."},{"block":false,"categoryid":396,"description":"Virtual for OpenGL implementation","ebuildids":[478517],"firstseen":"2010-05-04T00:54:45.661860","maintainer":"x11@gentoo.org","maintainername":"X11","name":"opengl","packageid":50131},{"block":false,"categoryid":438,"description":"Graphics library for fast image creation","ebuildids":[478517],"firstseen":"2010-05-04T00:54:45.661860","maintainer":"vapier@gentoo.org","maintainername":"Gentoo Graphics Project","name":"gd","packageid":53143,"summary":"gd is a graphics library. It allows your code to quickly draw images complete with lines, arcs, text, multiple colors, cut and paste from other images, and flood fills, and write out the result as a PNG or JPEG file. This is particularly useful in World Wide Web applications, where PNG and JPEG are two of the formats accepted for inline images by most browsers. gd is not a paint program. If you are looking for a paint program, you are looking in the wrong place. If you are not a programmer, you are looking in the wrong place, unless you are installing a required library in order to run an application. gd does not provide for every possible desirable graphics operation. It is not necessary or desirable for gd to become a kitchen-sink graphics package, but version 2.0 does include most frequently requested features, including both truecolor and palette images, resampling (smooth resizing of truecolor images) and so forth."}],"depending":[{"block":true,"categoryid":417,"description":"The classic memory game with some new life","ebuildids":[725900],"firstseen":"2010-05-04T00:54:45.661860","maintainer":"games@gentoo.org","maintainername":"Gentoo Games Project","name":"concentration","packageid":52142}],"ebuilds":[{"archs":["~amd64","~x86"],"ebuildid":478517,"firstseen":"2013-02-18T14:35:25.538615","license":"unafold","moddate":"2026-03-22T20:20:57","packageid":56702,"repoid":1,"slot":"0","uses":["test"],"version":"3.8-r1"}],"masks":[],"package":{"categoryid":353,"description":"Unified Nucleic Acid Folding and hybridization package","firstseen":"2011-01-14T14:42:30.477129","maintainer":"sci-biology@gentoo.org","maintainername":"Gentoo Biology Project","name":"unafold","packageid":56702},"rdependencies":[{"block":false,"categoryid":438,"description":"A free OpenGL utility toolkit, the open-sourced alternative to the GLUT library","ebuildids":[478517],"firstseen":"2010-05-04T00:54:45.661860","maintainer":"x11@gentoo.org","maintainername":"X11","name":"freeglut","packageid":47734,"summary":"Freeglut provides an open-source alternative to the OpenGL Utility Toolkit (GLUT) library. 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If you are looking for a paint program, you are looking in the wrong place. If you are not a programmer, you are looking in the wrong place, unless you are installing a required library in order to run an application. gd does not provide for every possible desirable graphics operation. It is not necessary or desirable for gd to become a kitchen-sink graphics package, but version 2.0 does include most frequently requested features, including both truecolor and palette images, resampling (smooth resizing of truecolor images) and so forth."}],"repos":[{"branch":"master","lastcommit":"52197549fd3431fa256b8edbafdcd3702dd0e134","name":"gentoo","path":"\/usr\/portage","repoid":1,"upstream":"origin"}],"tracked":false,"urls":["http:\/\/mfold.rna.albany.edu\/"],"uses":[{"description":"Enable dependencies and\/or preparations necessary to run tests (usually controlled by FEATURES=test but can be toggled independently)","isdefault":false,"use":"test"}]}