{"bugs":[{"bugid":591296,"firstseen":"2025-07-11T02:48:40.189262","severity":"normal","status":"CONFIRMED","summary":"sci-biology\/velvet-1.2.10 : src\/splay.c:25:17: fatal error: omp.h: No such file or directory"},{"bugid":725308,"firstseen":"2025-07-11T02:48:40.189262","severity":"normal","status":"CONFIRMED","summary":"sci-biology\/velvet-1.2.10 installs files with broken symlink"},{"bugid":864987,"firstseen":"2025-07-11T02:48:40.189262","severity":"normal","status":"CONFIRMED","summary":"sci-biology\/velvet-1.2.10 - x86_64-pc-linux-gnu-gcc: fatal error: cannot read spec file libgomp.spec: No such file or directory"},{"bugid":880981,"firstseen":"2025-07-11T02:48:40.189262","severity":"normal","status":"CONFIRMED","summary":"sci-biology\/velvet-1.2.10 - Fatal error: cant create obj\/concatenatedPreGraph.o: No such file or directory"}],"categories":[{"categoryid":353,"name":"sci-biology","summary":"The sci-biology category contains software that can be used in biological and related scientific environments."}],"changelog":[{"authoremail":"repomirrorci@gentoo.org","authorname":"Repository mirror & CI","commitid":"88e20d5d88a24862c772007f87133050c010e41e","committime":"2025-09-02T14:48:53","packageid":49259,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"mgorny@gentoo.org","authorname":"Michał Górny","body":"Signed-off-by: Michał Górny ","commitid":"b8500b6fadfa86d3a8bd2a5953e25e7d56fe8c5d","committime":"2025-09-02T14:32:22","packageid":49259,"repoid":1,"summary":"Move {llvm-core → llvm-runtimes}\/clang-runtime"},{"authoremail":"repomirrorci@gentoo.org","authorname":"Repository mirror & CI","commitid":"f6abb524388c440c805bf897a0e2bf46a0518323","committime":"2024-12-11T12:06:12","packageid":49259,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"mgorny@gentoo.org","authorname":"Michał Górny","body":"Signed-off-by: Michał Górny ","commitid":"6aa98b9305c952a63d1a5f2d39f748ac9e3c5505","committime":"2024-12-11T11:20:33","packageid":49259,"repoid":1,"summary":"Move {sys-devel → llvm-core}\/clang-runtime"},{"authoremail":"repomirrorci@gentoo.org","authorname":"Repository mirror & CI","commitid":"19ff66245dcbe997502462f012bdc7accc1214cc","committime":"2024-05-08T11:03:56","packageid":49259,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"sam@gentoo.org","authorname":"Sam James","body":"Signed-off-by: Sam James ","commitid":"db6cf7a1354743f4de574963a6d3cb409138896c","committime":"2024-05-08T10:44:56","packageid":49259,"repoid":1,"summary":"sci-biology\/velvet: fixup whitespace & openmp check"},{"authoremail":"jy6x2b32pie9@yahoo.com","authorname":"NHOrus","body":"* C99 porting. Split multi-assignments of NULLs into multiple lines\n* Also added dependencies on OpenMP if USE=openmp is enabled\n\n[sam: Formatting tweaks to commit msg.]\n\nCloses: https:\/\/bugs.gentoo.org\/919223\nSigned-off-by: NHOrus \nCloses: https:\/\/github.com\/gentoo\/gentoo\/pull\/35993\nSigned-off-by: Sam James ","commitid":"d11fa811ea39d044575471f7c4006bab88e23bfe","committime":"2024-03-29T20:44:26","packageid":49259,"repoid":1,"summary":"sci-biology\/velvet: Fix incompatible pointer types in 1.2.10"},{"authoremail":"repomirrorci@gentoo.org","authorname":"Repository mirror & CI","commitid":"3d4eaa9a9790c5956e454eda213b853490da09f7","committime":"2021-08-22T19:51:19","packageid":49259,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"jakov.smolic@sartura.hr","authorname":"Jakov Smolic","body":"Signed-off-by: Jakov Smolic \nSigned-off-by: David Seifert ","commitid":"d87cd1f599e0af88cc468f1d2ce330bbbae3a827","committime":"2021-08-22T19:37:16","packageid":49259,"repoid":1,"summary":"sci-biology\/velvet: Port to EAPI 8"},{"authoremail":"repomirrorci@gentoo.org","authorname":"Repository mirror & CI","commitid":"1dff16feef2bb9d2ccf6e0e5f2a4f87e02f7a94d","committime":"2021-04-18T06:22:06","packageid":49259,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"sam@gentoo.org","authorname":"Sam James","body":"Package-Manager: Portage-3.0.18-prefix, Repoman-3.0.3\nSigned-off-by: Sam James ","commitid":"7ed322862224742350cf37aa49746f56277c7c6c","committime":"2021-04-16T19:35:03","packageid":49259,"repoid":1,"summary":"sci-biology\/velvet: eutils--"},{"authoremail":"repomirrorci@gentoo.org","authorname":"Repository mirror & CI","commitid":"0da74f9e557ec388bdcfe974722f0f8c59012b4f","committime":"2019-12-11T00:25:48","packageid":49259,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"soap@gentoo.org","authorname":"David Seifert","body":"Package-Manager: Portage-2.3.81, Repoman-2.3.20\nSigned-off-by: David Seifert ","commitid":"b7037b994137528a79d3e427a3a391d79ec90f38","committime":"2019-12-10T23:48:31","packageid":49259,"repoid":1,"summary":"sci-biology\/velvet: Port to EAPI 7"},{"authoremail":"repo-qa-checks@gentoo.org","authorname":"Repository QA checks","commitid":"2fbdfbc003d28cd80696303439a07a13ff2dc035","committime":"2018-05-21T17:29:55","packageid":49259,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"m.mairkeimberger@gmail.com","authorname":"Michael Mair-Keimberger","commitid":"e43ee1e262f95f661e3418cb9addcfb2355f0a8a","committime":"2018-05-21T10:15:03","packageid":49259,"repoid":1,"summary":"sci-biology\/velvet: use HTTPs"},{"authoremail":"repo-qa-checks@gentoo.org","authorname":"Repository QA checks","commitid":"36515aff1dbc16b93a927b273b0dc548a1dcb518","committime":"2017-09-02T15:23:41","packageid":49259,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"fturco@fastmail.fm","authorname":"Francesco Turco","commitid":"115947ebedac8742bad5b29b475bfb127f8f2788","committime":"2017-08-23T20:46:27","packageid":49259,"repoid":1,"summary":"sci-biology\/velvet: update make.conf path"},{"authoremail":"repo-qa-checks@gentoo.org","authorname":"Repository QA checks","commitid":"9da93b55f5976e8ea3bada46be1d0932a5742d62","committime":"2017-04-22T16:21:52","packageid":49259,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"mmokrejs@fold.natur.cuni.cz","authorname":"Martin Mokrejš","body":"Also move the -j1 argument values onto the emake line directly.\n\nPackage-Manager: Portage-2.3.5, Repoman-2.3.2\nCloses: https:\/\/github.com\/gentoo\/gentoo\/pull\/4421\n\nSigned-off-by: Justin Lecher ","commitid":"4607de10af1d1389884d38ffdaad0c24baa8a0db","committime":"2017-04-15T11:22:35","packageid":49259,"repoid":1,"summary":"sci-biology\/velvet: v4 expose additional variables as described in manual"},{"authoremail":"mmokrejs@fold.natur.cuni.cz","authorname":"Martin Mokrejš","body":"Package-Manager: Portage-2.3.5, Repoman-2.3.2\nCloses: https:\/\/github.com\/gentoo\/gentoo\/pull\/4421\n\nSigned-off-by: Justin Lecher ","commitid":"3f6724509641d050ff8b5ac4396c2195e0a142d7","committime":"2017-04-14T11:12:06","packageid":49259,"repoid":1,"summary":"sci-biology\/velvet: v3 expose additional variables as described in manual"},{"authoremail":"mmokrejs@fold.natur.cuni.cz","authorname":"Martin Mokrejš","body":"Package-Manager: Portage-2.3.5, Repoman-2.3.2\nCloses: https:\/\/github.com\/gentoo\/gentoo\/pull\/4421\n\nSigned-off-by: Justin Lecher ","commitid":"3cc49dd6ca6d216bfc03f0d4629d806670530d7b","committime":"2017-04-14T09:52:36","packageid":49259,"repoid":1,"summary":"sci-biology\/velvet: simplify tests in ebuild"},{"authoremail":"mmokrejs@fold.natur.cuni.cz","authorname":"Martin Mokrejš","body":"Package-Manager: Portage-2.3.5, Repoman-2.3.2\nCloses: https:\/\/github.com\/gentoo\/gentoo\/pull\/4421\n\nSigned-off-by: Justin Lecher ","commitid":"6b672731c97e773142cbc7ee9a5a09cf2c4c5d60","committime":"2017-04-14T07:42:19","packageid":49259,"repoid":1,"summary":"sci-biology\/velvet: expose additional variables as described in manual and needed at compile time"},{"authoremail":"repo-qa-checks@gentoo.org","authorname":"Repository QA checks","commitid":"25093d6359f778b8d1052f66ba9e26fc29ded21a","committime":"2017-02-28T20:35:29","packageid":49259,"repoid":1,"summary":"Merge updates from master"},{"authoremail":"robbat2@gentoo.org","authorname":"Robin H. Johnson","body":"Signed-off-by: Robin H. Johnson ","commitid":"61b861acd7b49083dab687e133f30f3331cb7480","committime":"2017-02-28T19:47:27","packageid":49259,"repoid":1,"summary":"Drop $Id$ per council decision in bug #611234."},{"authoremail":"repo-qa-checks@gentoo.org","authorname":"Repository QA checks","commitid":"945f0d2a26da4f944fd06ad6a874f69d37ce1e06","committime":"2015-08-09T09:26:46","packageid":49259,"repoid":1,"summary":"2015-08-09 09:26:21 UTC"},{"authoremail":"robbat2@gentoo.org","authorname":"Robin H. Johnson","body":"This commit represents a new era for Gentoo:\nStoring the gentoo-x86 tree in Git, as converted from CVS.\n\nThis commit is the start of the NEW history.\nAny historical data is intended to be grafted onto this point.\n\nCreation process:\n1. Take final CVS checkout snapshot\n2. Remove ALL ChangeLog* files\n3. Transform all Manifests to thin\n4. Remove empty Manifests\n5. Convert all stale $Header$\/$Id$ CVS keywords to non-expanded Git $Id$\n5.1. Do not touch files with -kb\/-ko keyword flags.\n\nSigned-off-by: Robin H. Johnson \nX-Thanks: Alec Warner - did the GSoC 2006 migration tests\nX-Thanks: Robin H. Johnson - infra guy, herding this project\nX-Thanks: Nguyen Thai Ngoc Duy - Former Gentoo developer, wrote Git features for the migration\nX-Thanks: Brian Harring - wrote much python to improve cvs2svn\nX-Thanks: Rich Freeman - validation scripts\nX-Thanks: Patrick Lauer - Gentoo dev, running new 2014 work in migration\nX-Thanks: Michał Górny - scripts, QA, nagging\nX-Thanks: All of other Gentoo developers - many ideas and lots of paint on the bikeshed","commitid":"56bd759df1d0c750a065b8c845e93d5dfa6b549d","committime":"2015-08-08T20:49:04","packageid":49259,"repoid":1,"summary":"proj\/gentoo: Initial commit"},{"authoremail":"repo-qa-checks@gentoo.org","authorname":"Repository QA checks","commitid":"a637bd65b7fef8e2be4e7fc6e9097479372e0e2e","committime":"2015-06-19T16:38:33","packageid":49259,"repoid":1,"summary":"2015-06-19 16:35:30 UTC"}],"dependencies":[],"depending":[],"ebuilds":[{"archs":["~amd64","~x86"],"ebuildid":504381,"firstseen":"2013-12-29T14:38:42.439509","license":"GPL-2","moddate":"2026-03-22T20:20:57","packageid":49259,"repoid":1,"slot":"0","uses":["doc","openmp"],"version":"1.2.10"}],"masks":[],"package":{"categoryid":353,"description":"A sequence assembler for very short reads","firstseen":"2010-05-04T00:54:45.661860","maintainer":"sci-biology@gentoo.org","maintainername":"Gentoo Biology Project","name":"velvet","packageid":49259},"rdependencies":[],"repos":[{"branch":"master","lastcommit":"f87ce2b74421571078063820dc1065e7089c9fa7","name":"gentoo","path":"\/usr\/portage","repoid":1,"upstream":"origin"}],"tracked":false,"urls":["https:\/\/www.ebi.ac.uk\/~zerbino\/velvet\/"],"uses":[{"description":"Add extra documentation (API, Javadoc, etc). It is recommended to enable per package instead of globally","isdefault":false,"use":"doc"},{"description":"Build support for the OpenMP (support parallel computing), requires >=sys-devel\/gcc-4.2 built with USE=\"openmp\"","isdefault":false,"use":"openmp"}]}