sci-biology / velvet

A sequence assembler for very short reads

Official package sites : https://www.ebi.ac.uk/~zerbino/velvet/ ·

v1.2.10 :: 0 :: gentoo

Modified
License
GPL-2
Keywords
~amd64 ~x86
USE flags
doc openmp

v1.0.18-r1 :: 0 :: gentoo

Modified
License
GPL-2
Keywords
amd64 x86
USE flags
doc

General

doc
Add extra documentation (API, Javadoc, etc). It is recommended to enable per package instead of globally
doc
Add extra documentation (API, Javadoc, etc). It is recommended to enable per package instead of globally
openmp
Build support for the OpenMP (support parallel computing), requires >=sys-devel/gcc-4.2 built with USE="openmp"

sys-libs / zlib : Standard (de)compression library

virtual / latex-base : Virtual for basic LaTeX binaries

sys-libs / zlib : Standard (de)compression library

591296
sci-biology/velvet-1.2.10 : src/splay.c:25:17: fatal error: omp.h: No such file or directory
Michael Mair-Keimberger · gentoo
sci-biology/velvet: use HTTPs
Francesco Turco · gentoo
sci-biology/velvet: update make.conf path
Martin Mokrejš · gentoo
sci-biology/velvet: v4 expose additional variables as described in manual
Also move the -j1 argument values onto the emake line directly. Package-Manager: Portage-2.3.5, Repoman-2.3.2 Closes: https://github.com/gentoo/gentoo/pull/4421 Signed-off-by: Justin Lecher <jlec@gentoo.org>
Martin Mokrejš · gentoo
sci-biology/velvet: v3 expose additional variables as described in manual
Package-Manager: Portage-2.3.5, Repoman-2.3.2 Closes: https://github.com/gentoo/gentoo/pull/4421 Signed-off-by: Justin Lecher <jlec@gentoo.org>
Martin Mokrejš · gentoo
sci-biology/velvet: simplify tests in ebuild
Package-Manager: Portage-2.3.5, Repoman-2.3.2 Closes: https://github.com/gentoo/gentoo/pull/4421 Signed-off-by: Justin Lecher <jlec@gentoo.org>
Martin Mokrejš · gentoo
sci-biology/velvet: expose additional variables as described in manual and needed at compile time
Package-Manager: Portage-2.3.5, Repoman-2.3.2 Closes: https://github.com/gentoo/gentoo/pull/4421 Signed-off-by: Justin Lecher <jlec@gentoo.org>
Robin H. Johnson · gentoo
Drop $Id$ per council decision in bug #611234.
Signed-off-by: Robin H. Johnson <robbat2@gentoo.org>
Robin H. Johnson · gentoo
proj/gentoo: Initial commit
This commit represents a new era for Gentoo: Storing the gentoo-x86 tree in Git, as converted from CVS. This commit is the start of the NEW history. Any historical data is intended to be grafted onto this point. Creation process: 1. Take final CVS checkout snapshot 2. Remove ALL ChangeLog* files 3. Transform all Manifests to thin 4. Remove empty Manifests 5. Convert all stale $Header$/$Id$ CVS keywords to non-expanded Git $Id$ 5.1. Do not touch files with -kb/-ko keyword flags. Signed-off-by: Robin H. Johnson <robbat2@gentoo.org> X-Thanks: Alec Warner <antarus@gentoo.org> - did the GSoC 2006 migration tests X-Thanks: Robin H. Johnson <robbat2@gentoo.org> - infra guy, herding this project X-Thanks: Nguyen Thai Ngoc Duy <pclouds@gentoo.org> - Former Gentoo developer, wrote Git features for the migration X-Thanks: Brian Harring <ferringb@gentoo.org> - wrote much python to improve cvs2svn X-Thanks: Rich Freeman <rich0@gentoo.org> - validation scripts X-Thanks: Patrick Lauer <patrick@gentoo.org> - Gentoo dev, running new 2014 work in migration X-Thanks: Michał Górny <mgorny@gentoo.org> - scripts, QA, nagging X-Thanks: All of other Gentoo developers - many ideas and lots of paint on the bikeshed